These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1430 fasta sequence [TTCCTTTTGTTTTCGTTTATTTGTAGCATATTTTCGGTTCAATTTTGCCTTCGTTTTACAATTGTTTTCATAACACGTTTACGCCTGTTA-CCCCCTTTCACACTTTTTCTTTCTCACTTCTGTGTTTTTGTGTCTTCGCGTGTGAATGATTCGGTCAATTCTTGCAACAGAGTTAATAGATTACTGTTTTCTTCTTCCTATTTCTTCACTTAATTCCTGCCGTTTTGTTTGCTGTCACTATTGTTTGGTAATGGTTAGTTGCTAGTTGCTTAGCACGCATACAATAATGGCGCAGTGTGCTCTTTAAAATG-GGGGCCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATCGGAGTGGTTTTTCTGTACACAAAGAAGAGCGCGGTTTTTTACTGTAAGAGCTGTGTGCTTATTGTTGAGTCGAGTCTGATTTGTAGCGCGCGTATTTGCTGCTGCTGATGCTGAGGTGTGTTCCGATCGACTAAGACTTTTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCTAGCTTTGCTTTACTCCAATTGATTAATCGTTTTATGTGCGCGCGCGTGTGTGAATGTGTTCTTTTTTTGCTGGCTTTTTCCCCCGTTTAATTTGATGCCAGTTTGTTTTAACTTTGAAAAGATGCATTCTAATCTCTTCTTGCAAGTGCCACACTTAAAGGCTCACAACTCTTAACAGTTGCATTTGCGCTGAGCTTTGCTGCTTTTACTTCTCCCAACGCTGCTCTTCAAACACATTATCCCCTCTAAAAAAATCCCGATGTACAATCGCGCGTATCGGATTGCCGCCCTCCGCCTCCCGATCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACACGCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGGCAAAGACACTTTCTTTCGCTAGCGTGACGACAGCTGCGGGTGGCGAGTCGCAGCCGATGCGCCGAATTATACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATCCGG] [+] EMBL CNS08XTE [TTCCTTTTGTTTTCGTTTATTTGTAGCATATTTTCGGTTCAATTTTGCCTTCGTTTTACAATTGTTTTCATAACACGTTTACGCCTGTTACCCCCCTTTCACACTTTTTCTTTCTCACTTCTGTGTTTTTGTGTCTTCGCGTGTGAATGATTCGGTCAATTCTTGCAACAGAGTTAATAGATTACTGTTTTCTTCTTCCTATTTCTTCACTTAATTCCTGCCGTTTTGTTTGCTGTCGCTATTGTTTGGTAATGGTTAGTTGCTAGTTGCTTAGCATGCATAC AATGGTGCA GTGCTCTTTAAAATGTGGGGCCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATCGGAGTGGTTTTTCTGTACACAAAGAAGAGCGCGGTTTTTTACTGTAAGAGCTGTGTGCTTATTGTTGAGTC ] [+] EMBL BM591971 [ GTTTATTTGTAGCATATTTTCGGTTCGATTTTGCCTTCGTTTTACAATTGTTTTCCTAACACGTTTACGCCTGTTA CCCCCTTTCACACTTTTTCTTTTTCACTTCTGTGTTTTTGTGTCTTCTCGTGTGAATGATTCGGTCAATTCGTGCAACAGAGTTTATAGATTACTGGTTTCTTCTTCCGATTTCTTCACTTAATTCCTGCCGTTTTGTTTGCTGTCACTATTGTTTGGTAATGGTTAGTTACTAGTTGCTTAGCACGCATACAATAATGGCGCAGTGTGCTCTTTAAAATG GGGGCCTACAAATAAAGTGTACTTATCTATTGTT TTTTCCTCCTCCTTCTTGTTCAGTA ] [+] EMBL BM597653 [ ccGCCGTTTTGTTTGCTGTCACTATTGTTTGGTAATGGTTAGTTGCTAGTTGCTTAGCACGCATACAATAATGGCGCAGTGTGCTCTTTAAAATG GGGGCCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATTGGAGTGGTTTTTCTGTACACAAAGAAGAGCGCGGTTTTTTACTGTAAGAGCTGTGTGCTTGTTGTTGAGTTGAGTCTGATTTGTAGCGCGCGTATTTGCTGCTGCTGATGCTGAGGTGTGTTCCGATCGACTAAGACTTTTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCTAGCTTTGCTTTACTCCAATTGATTAATCGTTTTATGTGCGCGCGCGTGTGTGAATGTGTTCTTTTTTTGCTGGCTTTTTCCCCCGTTTAATTTGATGCCAGTTTGTTTTAACTTTGAAAAGATGCATTCTAATCTCTTCTTGCAAGTGCCACACTTAAAGGCTCACAACTCTTAACAGTTGCATTTGCGCTGAGCTTTGCTGCTTTTACTTCTCCCAACGCTGCTCTT ] [+] EMBL CNS08DBJ [ TCGCGTATTCATGCAACTAACATGCTTTTCTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCTAGCTTTGCTTTACTCCAATTGATTAATCGTTTTATGTGCGCGCGCGTGTGTGAATGTGTCCTTTTTTTGCTGGC TTTTCCCCCGTTTAATTTGATG ] [-] EMBL CNS08XTD [ TTAACAGTTGCATTTGCGCTGAGCTTTGCTGCTTTTACTTCTCCCAACGCTGCTACTCAAACACATTATCCCCTCTAAAAAAATCCCGATGTACAATCGCGCGTATCGGATTGCCGCCCTCCGCCTCCCGATCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACACGCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGGCAAAGACACTTTCTTTCGCTAGCGTGACGACAGCTGCGGGTGGCGAGTCGCAGCCGATGCGCCGAATTATACGTAT ] [-] EMBL CNS08DBI [ tcTCCCGATGTACAATCGCGCGTATCGGATTGCCGCCCTCCGCCTCCCGATCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGGTCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCC CTT ] [-] EMBL BM607290 [ GTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACACGCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGGCAAAGACACTTTCTTTCGCTAGCGTGACGACAGCTGCGGGTGGCGAGTCGCAGCCGATGCGCCGAATTATACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATCCGG] consensusID : consensus_8481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 596 fasta sequence [CTGCACCTTGATCACCTCCGCCGGCACGTGCACGATCGCCTCCACGATCGTGTCCCGGATCATGGCCCGGTCCTGCTCGTGGATCGCGAACGGGATCGGATTGCCGCCCTCCGCCTCCCGGTCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACACGCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGGCAAAGACACTTTCTTTCGCTAGCGTGACGACAGCTGCGGGTGGCGAGTCGCCCCCCATGCGCCGAATTATACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATCACCGCAAATTGCACGG] [-] EMBL BM623997 [CTGCACCTTGATCACCTCCGCCGGCACGTGCACGATCGCCTCCACGATCGTGTCCCGGATCATGGCCCGGTCCTGCTCGTGGATCGCGAACGGGATCGGATTGCCGCCCTCCGCCTCCCGGTCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAAGCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGTTGTTCGGGGCGGATATTACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACACGCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGGCAAAGACACTTTCTTTCGCTAGCGTGACGACAGCTGCGGGTGGCGAGTCGCCCCCCATGCGCCGAATTATACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATCACCGCAAATTGCACGG] [-] EMBL AGA284760 [ CTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCAGCCGGACCGGAATCTCCAGCTCATTCTGCATGATCACCTGCATCAGGGTGGGCAGGAACCCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATTGCTGTGCTGGGTCGATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTTTCCATGTTGTTCGGGGGGGATCCTACACGGGAGGGATGC ] consensusID : consensus_8481#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [CAGTGTGCTCTTTAAAATGGGGACCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATCGGAGTGGGTTTTCTGTACACAAAGAAGAGCGCGGTTTTACTGTAAGAGCTGTGTGCTTGTTGTTGAGTTGAGTCTGGTTTGTGGCGCTCGTGTTTGCTGCTGCTGCTGAGGTGTGTTCCGATCGACTAAGACTTTTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTCGG] [-] EMBL BM615468 [CAGTGTGCTCTTTAAAATGGGGACCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATCGGAGTGGGTTTTCTGTACACAAAGAAGAGCGCGGTTTTACTGTAAGAGCTGTGTGCTTGTTGTTGAGTTGAGTCTGGTTTGTGGCGCTCGTGTTTGCTGCTGCTGCTGAGGTGTGTTCCGATCGACTAAGACTTTTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCCCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCTTTTTTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8481#0 TTCCTTTTGTTTTCGTTTATTTGTAGCATATTTTCGGTTCAATTTTGCCTTCGTTTTACA 60 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 ATTGTTTTCATAACACGTTTACGCCTGTTACCCCCTTTCACACTTTTTCTTTCTCACTTC 120 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 TGTGTTTTTGTGTCTTCGCGTGTGAATGATTCGGTCAATTCTTGCAACAGAGTTAATAGA 180 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 TTACTGTTTTCTTCTTCCTATTTCTTCACTTAATTCCTGCCGTTTTGTTTGCTGTCACTA 240 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 TTGTTTGGTAATGGTTAGTTGCTAGTTGCTTAGCACGCATACAATAATGGCGCAGTGTGC 300 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 TCTTTAAAATGGGGGCCTACAAATAAAGTGTACTTATCTATTGTTTTGTTTTCCTCCTCC 360 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 TTCTTGTTCAGTAAAGGAAATCGGAGTGGTTTTTCTGTACACAAAGAAGAGCGCGGTTTT 420 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 TTACTGTAAGAGCTGTGTGCTTATTGTTGAGTCGAGTCTGATTTGTAGCGCGCGTATTTG 480 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 CTGCTGCTGATGCTGAGGTGTGTTCCGATCGACTAAGACTTTTGCCCGTTTTCCTTAAGC 540 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 ATTGAAATAATTTTCATATAATAGATAACTTCAATCGCGTATTCATGCAACTAACATGCT 600 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 TTTTTGTTTCCTTTAAATGAACGCATCTGCCCACACTGTGATATACAAAGGGTGTGGGTG 660 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 TGTGCTAGCTTTGCTTTACTCCAATTGATTAATCGTTTTATGTGCGCGCGCGTGTGTGAA 720 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 TGTGTTCTTTTTTTGCTGGCTTTTTCCCCCGTTTAATTTGATGCCAGTTTGTTTTAACTT 780 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 TGAAAAGATGCATTCTAATCTCTTCTTGCAAGTGCCACACTTAAAGGCTCACAACTCTTA 840 consensus_8481#1 ------------------------------------------------------------ consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 ACAGTTGCATTTGCGCTGAGCTTTGCTGCTTTTACTTCTCCCAACGCTGCTCTTCAAACA 900 consensus_8481#1 ----CTGCACCT----TGATCACCTCCGCCGGCACGTGCACGATCGC--CTCCACGATCG 50 consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 CATTATCCCCTCTAAAAAAATCCCGATGTACAATCGCGCGT---ATCGGATTGCCGCCCT 957 consensus_8481#1 TGTCCCGGATCATGGCCCGGTCCTGCTCGTGGATCGCGAACGGGATCGGATTGCCGCCCT 110 consensus_8481#2 ------------------------------------------------------------ consensus_8481#0 CCGCCTCCCGATCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCA 1017 consensus_8481#1 CCGCCTCCCGGTCCTGCCAGCTGCTGTTGATCAGGTTCTTCATGTAGATCGCACCCGCCA 170 consensus_8481#2 -------------CAGTGTGCTCTTTAAAATGGGGACCTACAAATAAAGTGTACTTATCT 47 * * *** * ** ** ** ** ** * * ** * consensus_8481#0 GCCGGACCGGAATCTCCAGCTCATTCT-GCATGATCACCTGCATCAGGGTGGGCAGGAAG 1076 consensus_8481#1 GCCGGACCGGAATCTCCAGCTCATTCT-GCATGATCACCTGCATCAGGGTGGGCAGGAAG 229 consensus_8481#2 ATTGTTTTGT--TTTCCTCCTCCTTCTTGTTCAGTAAAGGAAATCGGAGTGGGTTTTCTG 105 * * * *** *** **** * * * *** * ***** * consensus_8481#0 CCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCG 1136 consensus_8481#1 CCGATGATCTTGTGTACCTGATTCAGCTGCTCCTCGGCCTGCAATCGCTGTGCTGGGTCG 289 consensus_8481#2 TACACAAAGAAGAGCGC--GGTTT---TACTGTAAGAGCTGTGTGCTTGTTGTTGAGTTG 160 * * * * * * ** * ** * *** * ** ** ** * consensus_8481#0 ATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGT-TGTTCGGGGCGGATAT 1195 consensus_8481#1 ATGGTGGCACGAAGCAGCTCGCTTATCTTGACGGTATCCATGT-TGTTCGGGGCGGATAT 348 consensus_8481#2 AGTCTGGTTTGTGGC-GCTCGTGTTTGCTGCTGCTGCTGAGGTGTGTTCCGATCGACTAA 219 * *** * ** ***** * * ** * * * ** ***** * ** ** consensus_8481#0 TACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACAC 1255 consensus_8481#1 TACACGGGAGGGATGCAGCAGCACGGATGAACTAAGGAGCCGCTTCCGCAAAAATCACAC 408 consensus_8481#2 GACTTTTGC------CCGTTTTCCTTAAGCATTGAAATAATTTTCATATAATAGATA-AC 272 ** * * * * * * * * * * ** * * ** consensus_8481#0 GCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGG-CAAAGACACTT 1314 consensus_8481#1 GCGCACAGCACACACACACACTCCAAATTACGGCAGCAAATGCACCGG-CAAAGACACTT 467 consensus_8481#2 TTCAATCGCGTATTCATGCAA-CTAACATGCTTTTTTGTTTCCTTTAAATGAACGCATCT 331 * ** * ** ** * ** * * * * ** ** * consensus_8481#0 TCTTTCGCTAGCGTG-ACGACAGCTGCGGGTGGCGAGTCGCAGCCGATGCGCCGAATTAT 1373 consensus_8481#1 TCTTTCGCTAGCGTG-ACGACAGCTGCGGGTGGCGAGTCGCCCCCCATGCGCCGAATTAT 526 consensus_8481#2 GCCCACACTGTGATATACAAAGGGTGTGGGTGTGTGCCCGTTTTCCTTAAGC---ATTGA 388 * * ** * ** * * ** ***** ** * * ** *** consensus_8481#0 ACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATC-CGG-- 1430 consensus_8481#1 ACGTATTTCCCGGCCGGTAAAAAGAAATTGCGAATAGCAGCACGAATGGAAATCACCGCA 586 consensus_8481#2 AATAATTTTCATA----TAATAGATAACTTC-AATCGC-GTATTCATGCAACTA-ACATG 441 * **** * *** * ** * * *** ** * * *** ** * consensus_8481#0 ---------- consensus_8481#1 AATTGCACGG 596 consensus_8481#2 CTTTTTTCGG 451 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||