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Anopheles gambiae
cluster # 8560 cluster # 8560       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8560#0 length = 1012 sequences # 8  
consensus_8560#1 length = 796 sequences # 1  
consensus_8560#2 length = 699 sequences # 1  
consensus_8560#3 length = 438 sequences # 1  

consensusID : consensus_8560#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1012
fasta sequence
                              [AGATCGCCGAGTT-TGGCACGGAGC--TTTCGTGTCTTGTTTCAGCGCCAACGAAAGTGAAAACGTACTCGCGCACACCGTCACCGTGAGAAGTGAATCTAGACAGCAGCGTA-CCGTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCACCTGACGATGGTTGCCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGACAACATCGATGTGGACCGCG-TAC-TGTCGAACGATCGAATTCTC--AACAACTACCTCAAGTGCCTGCTCGACAAGGGA-CCGTGCA-CCCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGATGCGCTGAAGACCAACTGCGAAAAG-TGTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAATCGCCCATCTCGAGGAGCGTAAGCCACAGGAATGGAAGAAACTGCTCGACAAGTACGACCCGGAAGGTATCTACAAGAGCAAGTTCGAAAAGATCAACAAGCGTTCGTAGAGTGGG-TCACTCTGTTCCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCACCGTCCATTTAGCAGGCCGAGATGTCGAGTGAAAGAGAGCGAGAGAGAGATGTATAATTCCAGCAAGGAAAGCGGACACAA--GGGAGG-AAGCTGTTTTGTGCTAACGGAAGGACC-TTTGAAGTGGAGACTAGAGGAGATGACGAATGTGATATAATTGTGTGAATTGAAGGGCAGAGAAATTCGTTCGAGAAAAAACACGAGGCAGAAGTATTTGATTTAATTCAGACAGAAAACGGGAAGAAGTTAAGGTAGTTAAGGAGAGGCAGCGCATTTTTGTTTGAAAATTTATACTCATTTCCTCACAACTGACAAAGGACGACATGAATCATGCTGATAGGACGACCAAGTGTAAAGAGCCATAATTTATTTGATTTTCTATGGAAGAATTGATAATAAAAAAACCCCCACGACCAACGCGCGCT]

[+] EMBL AL933315             [AGATCGCCGAGTTATGGCACGGAGC  TTTCGTGT TTG TTCAGCGCC ACGAAAGTGAAAACGTACTCGCGCACACCGTCACCGTGAGAAGTGAATCTA ACAGCAGCGTACCCGTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCACCTGACGATGGTTGCTATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGACAACATCGATGTGGACCGCGTTACTTGTCGAACGATCGAATTCTCCAAACAAATAACTCAAGTGCCTGCTCGACAAGGGACCCGTGCACCCCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGATGCGCTGAAGACCAACTGCGAAAAGTTGTAGCc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM631276             [     ccgGAGTT GCGCACGGAGCTTTTTCGTGTCTTGTTTGAGCGCCAACGAAAGTGAAAACGTACTCGCGCACACCGTCACCGTGAGAAGTGAATCTAGA   CAGCGTA CCGTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCACCTGACGATGGTTGCCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGACAACATCGATGTGGACCGCG TAC TGTCGAACGATCGAATTCTC  AACAACTACCTCAAGTGCCTGCTCGACAAGGGA CCGTGCA CCCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGATGCGCTGAAGACCAACTGCGAAAAG TGTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAATCGCCCATCTCGAGGAGCGTAAGCCACAGGAATGGAAGAAACTGCTCGACAAGTACGACCCGGAAGGTATCTACAAGAGCAAGTTCGAAAAGATCAACAAGCGTTCGTAGAGTGGGTTCACTCTGTTCCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCACCGTCCATTTAGCAGGCCGAGATGTCGAGTGAAAGAGAGCGAGAGAGAGATGTATAATTCCAGCAAGGAAAGCGGACACAAGGGGGAGGAAAGCTGTTTTGTGCTAACGGAAGGACCTTTTGAAGTGGAGA                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX616711             [                            TTCGTGTCTTGTTTCAGCGCCAACGAAAGTGAAAACGTACTCGCGCACACCGTCACCGTGAGAAGTGAATCTAGACAGCAGCGTA CCGTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCACCTGACGATGGTTGCTATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGACAACATCGATGTGGACCGCG TAC TGTCGAACGATCGAATTCTC  AACAACTACCTCAAGTGCCTGCTCGACAAGGGA CCGTGCA CCCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGATGCGCTGAAGACCAACTGCGAAAAG TGTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAATCGCCCATCTCGAGGAGCGTAAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM648334             [                                           ccgGCCAACGAAAGTGAAAACGTACTCGCGCACACCGTCACCGTGAGAAGTGAATCTAGACAGCAGCGTA CCGTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCACCTGACGATGGTTGCCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGACAACATCGATGTGGACCGCG TAC TGTCGAACGATCGAATTCTC  AACAACTACCTCAAGTGCCTGCTCGACAAGGGA CCGTGCA CCCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGATGCGCTGAAGACCAACTGCGAAAAG TGTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAATCGCCCATCTCGAGGAGCGTAAGCCACAGGAATGGAAGAAACTGCTCGACAAGTACGACCCGGAAGGTATCTACAAGAGCAAGTTCGAAAAGATCAACAAGCGTTCGTAGAGTGGG TCACTCTGTTCCCCTGCCCACCCTGTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM638872             [                                                                                              GAATCTAGACAGCAGCGTA CCGTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCACCTGACGATGGTTGCCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGACAACATCGATGTGGACCGCG TAC TGTCGAACGATCGAATTCTC  AACAACTACCTCAAGTGCCTGCTCGACAAGGGA CCGTGCA CCCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGATGCGCTGAAGACCAACTGCGAAAAG TGTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAATCGCCCATCTCGAGGAGCGTAAGCCACAGGAATGGAAGAAACTGCTCGACAAGTACGACCCGGAAGGTATCTACAAGAGCAAGTTCGAAAAGATCAACAAGCGTTCGTAGAGTGGG TCACTCTGTTCCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM645937             [                                                                                                                                                                                                                                                                                                                                                        ccgGCTGAAGAAAACACTGCCCGATGCGCTGAAGACCAACTGCGAAAAG TGTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAATCGCCCATCTCGAGGAGCGTAAGCCACAGGAATGGAAGAAACTGCTCGACAAGTACGACCCGGAAGGTATCTACAAGAGCAAGTTCGAAAAGATCAACAAGCGTTCGTAGAGTGGG TCACTCTGTTCCCCTTCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCACCGTCCATTTAGCAGGCCGAGATGTCGAGTGAAAGAGAGCGAGAGAGAGATGTATAATTCCAGCAAGGAAAGCGGACACAA  GGGAGG AAGCTGTTTTGTGCTAACGGAAGGACC TTTGAAGTGGAGACTAGAGGAGATGAC                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM654209             [                                                                                                                                                                                                                                                                                                                                                                                                                                             ccgCGCCCATCTCGAGGAGCGTAAGCCACAGGAATGGAAGAAACTGCTCGACAAGTACGACCCGGAAGGTATCTACAAGAGCAAGGGCGAAAAGATCAACAAGCGTTCGTAGAGTGGG TCACTCTGTTCCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCACCGTCCATTTAGCAGGCCGAGATGTCGAGTGAAAGAGAGCGAGAGAGAGATGTATAATTCCAGCAAGGAAAGCGGACACAA  GGGAGG AAGCTGTTTTGTGCTAACGGAAGGACC TTTGAAGTGGAGACTAGAGGAGATGACGAATGTGATATAATTGTGTGAATTGAAGGGCAGAGAAATTCGTTCGAGAAAAAACACGAGGCAGAAGTATTTGATTTAATTCAGACAGAAAACGGGAAGAAGTTAAGGTAGTTAAGGAGAGGCAGCGCATTTTTGTTTGAAAATTTATACTCATTTCCTCACAACTGACAAAGGACGACATGAATCATGCTGATAGGACGACCAAGTGTAAAGAGCCATAATTTATTTGATTTTCTATGGAAGAATTGATAATAAAAAAACCCCCACGAC           ]
[+] EMBL BM619370             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccGGAAGAAACTGCTCGACAAGTACGACCCGGAAGGTATCTACAAGAGCAAGTTCGAAAAGATCAACAAGCGTTCGTAGAGTGGG TCACTCTGTTCCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCACCGTCCATTTAGCAGGCCGAGATGTCGAGTGAAAGAGAGCGAGAGAGAGATGTATAATTCCAGCAAGGAAAGCGGACACAA  GGGAGG AAGCTGTTTTGTGCTAACGGAAGGACC TTTGAAGTGGAGACTAGAGGAGATGACGAATGTGATATAATTGTGTGAATTGAAGGGCAGAGAAATTCGTTCGAGAAAAAACACGAGGCAGAAGTATTTGATTTAATTCAGACAGAAAACGGGAAGAAGTTAAGGTAGTTAAGGAGAGGCAGCGCATTTTTGTTTGAAAATTTATACTCATTTCCTCACAACTGACAAAGGACGACATGAATCATGCTGATAGGACGACCAAGTGTAAAGAGCCATAATTTATTTGATTTTCTATGGAAGAATTGATAATAAAAAAACCCCCACGACCAACGCGCGCT]


>consensus_8560#0 AGATCGCCGAGTTTGGCACGGAGCTTTCGTGTCTTGTTTCAGCGCCAACGAAAGTGAAAA CGTACTCGCGCACACCGTCACCGTGAGAAGTGAATCTAGACAGCAGCGTACCGTAAGTTC TTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCACCTGACGATGGTTG CCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGACA ACATCGATGTGGACCGCGTACTGTCGAACGATCGAATTCTCAACAACTACCTCAAGTGCC TGCTCGACAAGGGACCGTGCACCCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGATG CGCTGAAGACCAACTGCGAAAAGTGTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAA TCGCCCATCTCGAGGAGCGTAAGCCACAGGAATGGAAGAAACTGCTCGACAAGTACGACC CGGAAGGTATCTACAAGAGCAAGTTCGAAAAGATCAACAAGCGTTCGTAGAGTGGGTCAC TCTGTTCCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCACCGTCCATTT AGCAGGCCGAGATGTCGAGTGAAAGAGAGCGAGAGAGAGATGTATAATTCCAGCAAGGAA AGCGGACACAAGGGAGGAAGCTGTTTTGTGCTAACGGAAGGACCTTTGAAGTGGAGACTA GAGGAGATGACGAATGTGATATAATTGTGTGAATTGAAGGGCAGAGAAATTCGTTCGAGA AAAAACACGAGGCAGAAGTATTTGATTTAATTCAGACAGAAAACGGGAAGAAGTTAAGGT AGTTAAGGAGAGGCAGCGCATTTTTGTTTGAAAATTTATACTCATTTCCTCACAACTGAC AAAGGACGACATGAATCATGCTGATAGGACGACCAAGTGTAAAGAGCCATAATTTATTTG ATTTTCTATGGAAGAATTGATAATAAAAAAACCCCCACGACCAACGCGCGCT



consensusID : consensus_8560#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 796
fasta sequence
                              [GACCCACGCGTCCGAGAGAGTTGCGCACGGAGCTTTTTCGTGTCTTGTTTGAGCGCCAACGAAAGTGAAAACGTACTCGCGCACACCGTCACCGTGAGAAGTGAATCTAGACAGCGTACCGTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCACCTGACGATGGTTGCCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCCGACAACATCCATGTGGACCGCGTACTGTCGAACGATCGAATTTTTCAAAAATTACCTCCAAGGGGCTGCTCCAAAAAGGGACCGTGGCCCCCCAGGAGGGGTCGGGGAACTTGAAAAAAAACCCTTGCCCCATTGGCTTTGAAAACCCCCTGGGAAAAAATGTTACCGGAAAAAAAAAGGCCCCCCAGTTTTCCCGCCAAGGGGAATTCCCCCCCTTTCTTCGGGGGGGGTTAAACCCCCCCGGGAAATGGGAAAAAAATTTGTTTTCCAAAAAATTCCACACCCCCGGGAGGGGTTTTTTTCCAAAAAAAAAGTTCCCAAAAAAAAAACAAAAAAGGGCTTCCCGAAAAAGGGGGGGGCCCCCTTTTTTTTCCCCCGGGGCCCCCCCCGGGGTTCCCCCTTTTCCCCCGGGGGGGGGGGGCAACCCCCCCCCCTCTTTTTTTTTTTACGCGCCCCCCAAATTTCTTTCTTTTGTTAAAACAACCCGCAAAAAAAAAAAATAGTTTTTTTTTTTCTCCCCCCGGGGAGAGAGGGCGCCCCCCCCCGGGGGG]

[+] EMBL BM657689             [GACCCACGCGTCCGAGAGAGTTGCGCACGGAGCTTTTTCGTGTCTTGTTTGAGCGCCAACGAAAGTGAAAACGTACTCGCGCACACCGTCACCGTGAGAAGTGAATCTAGACAGCGTACCGTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCACCTGACGATGGTTGCCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCCGACAACATCCATGTGGACCGCGTACTGTCGAACGATCGAATTTTTCAAAAATTACCTCCAAGGGGCTGCTCCAAAAAGGGACCGTGGCCCCCCAGGAGGGGTCGGGGAACTTGAAAAAAAACCCTTGCCCCATTGGCTTTGAAAACCCCCTGGGAAAAAATGTTACCGGAAAAAAAAAGGCCCCCCAGTTTTCCCGCCAAGGGGAATTCCCCCCCTTTCTTCGGGGGGGGTTAAACCCCCCCGGGAAATGGGAAAAAAATTTGTTTTCCAAAAAATTCCACACCCCCGGGAGGGGTTTTTTTCCAAAAAAAAAGTTCCCAAAAAAAAAACAAAAAAGGGCTTCCCGAAAAAGGGGGGGGCCCCCTTTTTTTTCCCCCGGGGCCCCCCCCGGGGTTCCCCCTTTTCCCCCGGGGGGGGGGGGCAACCCCCCCCCCTCTTTTTTTTTTTACGCGCCCCCCAAATTTCTTTCTTTTGTTAAAACAACCCGCAAAAAAAAAAAATAGTTTTTTTTTTTCTCCCCCCGGGGAGAGAGGGCGCCCCCCCCCGGGGGG]


>consensus_8560#1 GACCCACGCGTCCGAGAGAGTTGCGCACGGAGCTTTTTCGTGTCTTGTTTGAGCGCCAAC GAAAGTGAAAACGTACTCGCGCACACCGTCACCGTGAGAAGTGAATCTAGACAGCGTACC GTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCACCTGAC GATGGTTGCCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAA GTTCCGACAACATCCATGTGGACCGCGTACTGTCGAACGATCGAATTTTTCAAAAATTAC CTCCAAGGGGCTGCTCCAAAAAGGGACCGTGGCCCCCCAGGAGGGGTCGGGGAACTTGAA AAAAAACCCTTGCCCCATTGGCTTTGAAAACCCCCTGGGAAAAAATGTTACCGGAAAAAA AAAGGCCCCCCAGTTTTCCCGCCAAGGGGAATTCCCCCCCTTTCTTCGGGGGGGGTTAAA CCCCCCCGGGAAATGGGAAAAAAATTTGTTTTCCAAAAAATTCCACACCCCCGGGAGGGG TTTTTTTCCAAAAAAAAAGTTCCCAAAAAAAAAACAAAAAAGGGCTTCCCGAAAAAGGGG GGGGCCCCCTTTTTTTTCCCCCGGGGCCCCCCCCGGGGTTCCCCCTTTTCCCCCGGGGGG GGGGGGCAACCCCCCCCCCTCTTTTTTTTTTTACGCGCCCCCCAAATTTCTTTCTTTTGT TAAAACAACCCGCAAAAAAAAAAAATAGTTTTTTTTTTTCTCCCCCCGGGGAGAGAGGGC GCCCCCCCCCGGGGGG



consensusID : consensus_8560#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 699
fasta sequence
                              [ACCGTGAGAAGTGAATCTAGACAGCAGCGTACCGTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCTGACGATGGTTGCCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGACAACATCGATGTGGACCGCGTACTGTCGAACGATCGAATTCTCAACAACTACCTCAAGTGCCTGCTCGACAAGGGACCGTGCACCCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGATGCGCTGAAGACCAACTGCGAAGTGTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAATCGCCCATCTCGAGGAGCGTAAGCCACAGGAATGGAAGAAACTGCTCGACAAGTACGACCCGGAAGGTATCTACAAGAGCAAGTTCGAAAAGATCAACAAGCGTTCGTAGAGTGGGTCGCCCTGTTCCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCACCGTCCATTTAGTAGGCCGAGATGTAGAGTGAAAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGATGTATAATTCCAGCAAGGAAAGTGGATACAAGGGAGGAAGCTGTTTTGTGCTAACGGAAGGACCTTTTAAGTGGAGGCTAGAGGAGATGACGAATGTGATATAATTGTGTGAATTGAAGGGCAGAGAAA]

[+] EMBL BX608424             [ACCGTGAGAAGTGAATCTAGACAGCAGCGTACCGTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCTGACGATGGTTGCCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGACAACATCGATGTGGACCGCGTACTGTCGAACGATCGAATTCTCAACAACTACCTCAAGTGCCTGCTCGACAAGGGACCGTGCACCCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGATGCGCTGAAGACCAACTGCGAAGTGTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAATCGCCCATCTCGAGGAGCGTAAGCCACAGGAATGGAAGAAACTGCTCGACAAGTACGACCCGGAAGGTATCTACAAGAGCAAGTTCGAAAAGATCAACAAGCGTTCGTAGAGTGGGTCGCCCTGTTCCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCACCGTCCATTTAGTAGGCCGAGATGTAGAGTGAAAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGATGTATAATTCCAGCAAGGAAAGTGGATACAAGGGAGGAAGCTGTTTTGTGCTAACGGAAGGACCTTTTAAGTGGAGGCTAGAGGAGATGACGAATGTGATATAATTGTGTGAATTGAAGGGCAGAGAAA]


>consensus_8560#2 ACCGTGAGAAGTGAATCTAGACAGCAGCGTACCGTAAGTTCTTGAAACGGAAAGCAACAA TCAACCAAACAGCGGCACAATGAAGCTGACGATGGTTGCCATTTTCGCGATGGTGGTCGT GTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGACAACATCGATGTGGACCGCGTACT GTCGAACGATCGAATTCTCAACAACTACCTCAAGTGCCTGCTCGACAAGGGACCGTGCAC CCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGATGCGCTGAAGACCAACTGCGAAGT GTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAATCGCCCATCTCGAGGAGCGTAAGC CACAGGAATGGAAGAAACTGCTCGACAAGTACGACCCGGAAGGTATCTACAAGAGCAAGT TCGAAAAGATCAACAAGCGTTCGTAGAGTGGGTCGCCCTGTTCCCCTGCCCACCCTGTTC CCTTGTTCCCTGTGTGCTGCAACCCACCGTCCATTTAGTAGGCCGAGATGTAGAGTGAAA GAGAGAGCGAGAGAGAGAGAGCGAGAGAGATGTATAATTCCAGCAAGGAAAGTGGATACA AGGGAGGAAGCTGTTTTGTGCTAACGGAAGGACCTTTTAAGTGGAGGCTAGAGGAGATGA CGAATGTGATATAATTGTGTGAATTGAAGGGCAGAGAAA



consensusID : consensus_8560#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence
                              [CCACGCGTCCGGGGTCACTCTGTTCCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCACCGTCCATTTAGCAGGCCGAGATGTCGAGTGAAAGAGAGCGAGAGAGAGATGTATAATTCCAGCAAGGAAAGCGGACACAAGGGAGGAAGCTGTTTTGTGCTAACGGAAGGACCTTTGAAGTGGAGACTAGAGGAGATGACGAATGTGATATAATTGTGTGAATTGAAGGGCAGAGAAATTCGTTCGAGAAAAAACACGAGGCAGAAGTATTTGATTTAATTCACACAGAAAACGGGAAGAAGTTAAGGTAGTTAAGGAGAGGCAGCGCATTTTTGTTTGAAAATTTATACTCATTTCCTCACAACTGACAAAGGACGACATGAATCATGCTGATAGGACGACCAAGTGCAAAGAGCCATAATTTATTTG]

[+] EMBL BM654577             [CCACGCGTCCGGGGTCACTCTGTTCCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCACCGTCCATTTAGCAGGCCGAGATGTCGAGTGAAAGAGAGCGAGAGAGAGATGTATAATTCCAGCAAGGAAAGCGGACACAAGGGAGGAAGCTGTTTTGTGCTAACGGAAGGACCTTTGAAGTGGAGACTAGAGGAGATGACGAATGTGATATAATTGTGTGAATTGAAGGGCAGAGAAATTCGTTCGAGAAAAAACACGAGGCAGAAGTATTTGATTTAATTCACACAGAAAACGGGAAGAAGTTAAGGTAGTTAAGGAGAGGCAGCGCATTTTTGTTTGAAAATTTATACTCATTTCCTCACAACTGACAAAGGACGACATGAATCATGCTGATAGGACGACCAAGTGCAAAGAGCCATAATTTATTTG]


>consensus_8560#3 CCACGCGTCCGGGGTCACTCTGTTCCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCT GCAACCCACCGTCCATTTAGCAGGCCGAGATGTCGAGTGAAAGAGAGCGAGAGAGAGATG TATAATTCCAGCAAGGAAAGCGGACACAAGGGAGGAAGCTGTTTTGTGCTAACGGAAGGA CCTTTGAAGTGGAGACTAGAGGAGATGACGAATGTGATATAATTGTGTGAATTGAAGGGC AGAGAAATTCGTTCGAGAAAAAACACGAGGCAGAAGTATTTGATTTAATTCACACAGAAA ACGGGAAGAAGTTAAGGTAGTTAAGGAGAGGCAGCGCATTTTTGTTTGAAAATTTATACT CATTTCCTCACAACTGACAAAGGACGACATGAATCATGCTGATAGGACGACCAAGTGCAA AGAGCCATAATTTATTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8560#0      AGATCGCCGAGTTTGGCACGGAGCTTTCGTGTCTTGTTTCAGCGCCAACGAAAGTGAAAA 60
consensus_8560#3      ------------------------------------------------------------
consensus_8560#2      ------------------------------------------------------------
consensus_8560#1      ------------------------------------------------------------
                                                                                  

consensus_8560#0      CGTACTCGCGCACACCGTCACCGTGAGAAGTGAATCTAGACAGCAGCGTACCGTAAGTTC 120
consensus_8560#3      ------------------------------------------------------------
consensus_8560#2      ------------------------ACCGTGAGAAGTGAATCTAGACAGCAGCGTACCGTA 36
consensus_8560#1      ------------------------------------------------------------
                                                                                  

consensus_8560#0      TTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCACCTGACGATGGTTG 180
consensus_8560#3      ------------------------------------------------------------
consensus_8560#2      AGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGAAGCTGACGATGGT 96
consensus_8560#1      ------------------------------------------------------------
                                                                                  

consensus_8560#0      CCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGACA 240
consensus_8560#3      ------------------------------------------------------------
consensus_8560#2      TGCCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGTACACCGACAAGTTCGA 156
consensus_8560#1      ----------GACCCACGCGTCCGAGAGAGTTGCGCACGGAGCTTTTTCGTGTCTTGTTT 50
                                                                                  

consensus_8560#0      ACATCGATGTGGACCGCGTACTGTCGAACGATCGAATTCTCAACAACTACCTCAAGTGCC 300
consensus_8560#3      ------------------------------------------------------------
consensus_8560#2      CAACATCGATGTGGACCGCGTACTGTCGAACGATCGAATTCTCAACAACTACCTCAAGTG 216
consensus_8560#1      GAGCGCCAACGAAAGTGAAAACGTACTCGCGCACACCGTCACCGTGAGAAGTGAATCTAG 110
                                                                                  

consensus_8560#0      TGCTCGACAAGGGACCGTGCACCCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGATG 360
consensus_8560#3      ------------------------------------------------------------
consensus_8560#2      CCTGCTCGACAAGGGACCGTGCACCCAGGAGGGTCGTGAGCTGAAGAAAACACTGCCCGA 276
consensus_8560#1      ACAGCGTACCGTAAGTTCTTGAAACGGAAAGCAACAATCAACCAAACAGCGGCACAATGA 170
                                                                                  

consensus_8560#0      CGCTGAAGACCAACTGCGAAAAGTGTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAA 420
consensus_8560#3      ------------------------------------------------------------
consensus_8560#2      TGCGCTGAAGACCAACTGCGAAGTGTAGCGAGAAGCAGCGCACCAGCTCCCGCAAGGTAA 336
consensus_8560#1      AGCACCTGACGATGGTTGCCATTTTCGCGATGGTGGTCGTGTTGGCCAGCGCCCAGAAGT 230
                                                                                  

consensus_8560#0      TCGCCCATCTCGAGGAGCGTAAGCCACAGGAATGGAAGAAACTGCTCGACAAGTACGACC 480
consensus_8560#3      ------------------------------------------------------------
consensus_8560#2      TCGCCCATCTCGAGGAGCGTAAGCCACAGGAATGGAAGAAACTGCTCGACAAGTACGACC 396
consensus_8560#1      ACACCGACAAGTTCCGACAACATCCATGTGGACCGCGTACTGTCGAACGATCGAATTTTT 290
                                                                                  

consensus_8560#0      CGGAAGGTATCTACAAGAGCAAGTTCGAAAAGATCAACAAGCGTTCGTAGAGTGGGTCAC 540
consensus_8560#3      ------------------------------------CCACGCGTCCG------GGGTCAC 18
consensus_8560#2      CGGAAGGTATCTACAAGAGCAAGTTCGAAAAGATCAACAAGCGTTCGTAGAGTGGGTCGC 456
consensus_8560#1      CAAAAATTACCTCCAAGGGGCTGCTCCAAAAAGGGACCGTGGCCCCCCAGGAGGGGTCGG 350
                                                           *  *    *       *****  

consensus_8560#0      TCTGTT----------CCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCA 590
consensus_8560#3      TCTGTT----------CCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCA 68
consensus_8560#2      CCTGTT----------CCCCTGCCCACCCTGTTCCCTTGTTCCCTGTGTGCTGCAACCCA 506
consensus_8560#1      GGAACTTGAAAAAAAACCCTTGCCCCATTGGCTTTGAAAACCCCCTGGGAAAAAATGTTA 410
                           *          *** *****     * *        ***   *      *    *

consensus_8560#0      CCGTCCATTTAGCAGGCCG--AGATGTCGAGTGAAAGAGAG--CGAGAGAGAGA------ 640
consensus_8560#3      CCGTCCATTTAGCAGGCCG--AGATGTCGAGTGAAAGAGAG--CGAGAGAGAGA------ 118
consensus_8560#2      CCGTCCATTTAGTAGGCCG--AGATGTAGAGTGAAAGAGAGAGCGAGAGAGAGAGAGCGA 564
consensus_8560#1      CCGGAAAAAAAAAGGCCCCCCAGTTTTCCCGCCAAGGGGAATTCCCCCCCTTTCTTC--- 467
                      ***   *   *   * **   ** * *   *  ** * **   *                

consensus_8560#0      ------TGTATAATTCCAGCAAGGAAAGCGGACACAAGGGAGG-----AAGCTGTTTTGT 689
consensus_8560#3      ------TGTATAATTCCAGCAAGGAAAGCGGACACAAGGGAGG-----AAGCTGTTTTGT 167
consensus_8560#2      GAGAGATGTATAATTCCAGCAAGGAAAGTGGATACAAGGGAGG-----AAGCTGTTTTGT 619
consensus_8560#1      -GGGGGGGGTTAAACCCCCCCGGGAAATGGGAAAAAAATTTGTTTTCCAAAAAATTCCAC 526
                             *  ***  **  *  *****  *** * **    *      **    **    

consensus_8560#0      GCTAACGGAAGGACCTTTGAAGTGGAGACTAGAGGAGATGACGAATGTGATATAATTGTG 749
consensus_8560#3      GCTAACGGAAGGACCTTTGAAGTGGAGACTAGAGGAGATGACGAATGTGATATAATTGTG 227
consensus_8560#2      GCTAACGGAAGGACCTTTTAAGTGGAGGCTAGAGGAGATGACGAATGTGATATAATTGTG 679
consensus_8560#1      ACCCCCGGGAGGGGTTTTTTTCCAAAAA--AAAAGTTCCCAAAAAAAAAACAAAAAAGGG 584
                       *   *** ***   ***       *    * * *     *  **    * * **  * *

consensus_8560#0      TGAATTGAAGGGCAGAGAAATTCGTTCGAGAAAAAACACGAGGCAGAA--GTATTTGATT 807
consensus_8560#3      TGAATTGAAGGGCAGAGAAATTCGTTCGAGAAAAAACACGAGGCAGAA--GTATTTGATT 285
consensus_8560#2      TGAATTGAAGGGCAGAGAAA---------------------------------------- 699
consensus_8560#1      CTTCCCGAAAAAGGGGGGGGCCCCCTTTTTTTTCCCCCGGGGCCCCCCCCGGGGTTCCCC 644
                            ***     * *                                           

consensus_8560#0      TAATTCAGACAGAAAACGGGAAGAAGTTAAGGTAGTTAAGGAGAGGCAGCGCATTTTTGT 867
consensus_8560#3      TAATTCACACAGAAAACGGGAAGAAGTTAAGGTAGTTAAGGAGAGGCAGCGCATTTTTGT 345
consensus_8560#2      ------------------------------------------------------------
consensus_8560#1      CTTTTCCCCCGGGGGGGGGGGGCAACCCCCCCCCCTCTTTTTTTTTTTACGCGCCC---- 700
                                                                                  

consensus_8560#0      TTGAAAATTTATACTCATTTCCTCACAACTGACAAAGGACGACATGAATCATGCTGATAG 927
consensus_8560#3      TTGAAAATTTATACTCATTTCCTCACAACTGACAAAGGACGACATGAATCATGCTGATAG 405
consensus_8560#2      ------------------------------------------------------------
consensus_8560#1      CCCAAATTTCTTTCTTTTGTTAAAACAACCCGCAAAAAAAAAAAATAGTTTTTTTTTTTC 760
                                                                                  

consensus_8560#0      GACGACCAAGTGTAAAGAGCCATAATTTATTTGATTTTCTATGGAAGAATTGATAATAAA 987
consensus_8560#3      GACGACCAAGTGCAAAGAGCCATAATTTATTTG--------------------------- 438
consensus_8560#2      ------------------------------------------------------------
consensus_8560#1      TCCCCCCGGGGAGAGAGGGCGCCCCCCCCCGGGGGG------------------------ 796
                                                                                  

consensus_8560#0      AAAACCCCCACGACCAACGCGCGCT 1012
consensus_8560#3      -------------------------
consensus_8560#2      -------------------------
consensus_8560#1      -------------------------
                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)