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Anopheles gambiae
cluster # 8615 cluster # 8615       Sequences # 11       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8615#0 length = 1257 sequences # 5  
consensus_8615#1 length = 723 sequences # 3  
consensus_8615#2 length = 595 sequences # 1  
consensus_8615#3 length = 576 sequences # 1  
consensus_8615#4 length = 413 sequences # 1  

consensusID : consensus_8615#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1257
fasta sequence
                              [CCGCCCACGCGTGGTCAACTGGAACGGGTGCGTTATTCTCAGGCGTGCT-CGG-ACG--TATC--GGACTGCCAAACCAACCCGATCGGGGAGCCCAGTGACCGGACAGCACCTCGTGTGGGGCAGGGTGTGCTTAATCCAACTTTCGCAAAACACTCACAAACACACATCGGAGGTGGGGTAAACCAGTTCTGAATTGACGTGTTGGTTCGTGTGTTTGTACCCCAATTTTTTGTGTTGGTTCGTTGTTTGTGATTGTTTCGTTCGCGAAGAAACTGGACCGTGTCCCGGACCGGGTTTGTGTGTGCATGTGTGCATGGTTACCAGTCCGTACGCAGAGGTGAACAGTTGGGGTCGTGTTCCGAGCG------GCCACAGCTGGAAGGAATTAGTGTGTTAGTGTAGTAAGCTGTAAAAGTATTTTCGCTTGTGATTAAACTCATTGAAGCAGAAGATCCCAACGATTGCTGTTACCAGTGTCCGAGTGGTGCAGAAAGCATAAATTACTTAGCAGACGGCAATCCTGAGGTGACAATAGACGTTCCCTCTGGTGACAATCTTAAGGACATCATGGAGACAAAGCCAGACAGTAAAGTCGACGATGGCATCGACGCT-CCGTTGTGGATGTTTTGGAAGCGACGGCGCTACATTGTGGT-GTTTATGGCGTTCCTGGGCTTCTTCAACGTCTACTCGCTGCGGGTCAACCTGAGCGTAGCTATCGTTGCGATGACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCGGATACGAGCAATACTTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCTTTTACGGCTACATCCTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATTATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGAGTGGCCGTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGGGTGTGACCTTCCCGTGCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCCATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCG]

[+] EMBL BM649325             [CCGCCCACGCGTCCGCAACTGGAACGGGTGCGTTATTCTCAGGCGTGCT CGG ACG  TATC  GGACTGCCAAACCAACCCGATCGGGGAGCCCAGTGACCGGACAGCACCTCGTGTGGGGCAGGGTGTGCTTAATCCAACTTTCGCAAAACACTCACAAACACACATCGGAGGTGGGGTAAACCAGTTCTGAATTGACGTGTTGGTTCGTGTGTTTGTACCCCAATTTTTTGTGTTGGTTCGTTGTTTGTGATTGTTTCGTTCGCGAAGAAACTGGACCGTGTCCCGGACCGGGTTTGTGTGTGCATGTGTGCATGGTTACCAGTCCGTACGCAGAGGTGAACAGTTGGGGTCGTGTTCCGAGCG      GCCACAGCTGGAAGGAATTAGTGTGTTAGTGTAGTAAGCTGTAAAAGTATTTTCGCTTGTGATTAAACTCATTGAAGCAGAAGATCCCAACGATTGCTGTTACCAGTGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM612339             [      cCGCGTGGTCAACTGGAACGGGTGCGTTATTCTCAGGCGTGCT CGG ACG  TACC  GGACTGGCAAACCAACCCGATCGGGGAGCCCAGTGACCGGACAGCACCTCGTGTGGGGCAGGGTGTGCTTAATCCAACTTTCGCAAAACACTCACAAACACACATTGGAGGTGGGGTAAACCAGTTCTGCATTGACGTGTTGCTTCGTGTGTTTGTACCCCCATTTTTTGTGTTGGTTCGTTGTTTGTGATTGTTTCGTTCGCGAAGAAACTGGACCGTGTCCCGGACCGGGTTTGTGTGTGCATGTGTGCATGGTTACCAGTCCGTACCCAAAGGTGAACAGTTGGGGTCGTGTTCCGAGCGGCCACAGCCACAGCTGGAAGGAAGTATTGTGTTAGTGTAGTAAGCTGTAAAAGTAATTTCGCTTGTGATTAAACTCATTGAAGCAGAAGATCCCGAAGATTGGTGTTGCCAGTGTCCGAGTGGTGCAGAAAGCATAAATTACTTAGCAGACGGCAATCCTGAGGTGACAATAGACGTTCCCTCTGGTGACAATCTTAAGGACATCATGGAGACAAAGCCAGACAGTAAAGTCGACGATGGCATCGACGCT CCGTTGTGGATGTTTTGGAAGCGACGGCGCTACATTGTGGT GTTTATGGCGTTCCTGGGCTTCTTCAACGTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AL931545             [      tgcCGAGGT  ACTGGAACGGGTGCGTTATTCTCAGGCGTGCTCCGGAACGGTTATCTGGGACTGCCAAACCAACCCGATCGGGGAGCCCAGTGACCGGACAGCACCTCGTGTGGGGCA GGTGTGCTTAATCCAACTTTCGCAAAACACTCACAAACACACATCGGAGGTGGGGTAAACCAGTTCTGAATTGACGTGTTGGTTCGTGTGTTTGTACCCCAA TTTTTGTGTTGGTTCGTTGTTTGTGATTGTTTCGTTCGCGAAGAAACTGGACCGTGTCCCGGACCGGGTTTGTGTGTGCATGTGTGCATGGTTACCAGTCCGTACGCAGAGGTGAACAGTTGGGGTCGTGTTCCGAGCG      GCCACAGCTGGAAGGAATTAGTGTGTTAGTGTAGTAAGCTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM639084             [                                                                                      ccGGGAGCCCAGTGACCGGACAGCACCTCGTGTGGGGCAGGGTGTGCTTAATCCAACTTTCGCAAAACACTCACAAACACACATCGGAGGTGGGGTAAACCAGTTCTGAATTGACGTGTTGGTTCGTGTGTTTGTACCCCAATTTTTTGTGTTGGTTCGTTGTTTGTGATTGTTTCGTTCGCGAAGAAACTGGACCGTGTCCCGGACCGGGTTTGTGTGTGCATGTGTGCATGGTTACCAGTCCGTACGCAGAGGTGAACAGTTGGGGTCGTGTTCCGAGCG      GCCACAGCTGGAAGGAATTAGTGTGTTAGTGTAGTAAGCTGTAAAAGTATTTTCGCTTGTGATTAAACTCATTGAAGCAGAAGATCCCAACGATTGCTGTTACCAGTGTCCGAGTGGTGCAGAAAGCATAAATTACTTAGCAGACGGCAATCCTGAGGTGACAATAGACGTTCCCTCTGGTGACAATCTTAAGGACATCATGGAGACAAAGCCAGACAGTAAAGTCGACGATGGCATCGACGCTCCCGTTGTGGATGTTTTGGAAGCGACGGCGCTACATTGTGGTGGTTTATGGCGTTCCTGGGCTTCTTCAACGTCTACTCGCTGCGGGTCAACCTGAGCGTAGCTATCGTTGCGATGACGGAGAACCGGACCGTACACTACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM601672             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ccgGGCATCGACGCT CCGTTGTGGATGTTTTGGAAGCGACGGCGCTACATTGTGGT GTTTATGGCGTTCCTGGGCTTCTTCAACGTCTACTCGCTGCGGGTCAACCTGAGCGTAGCTATCGTTGCGATGACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCGGATACGAGCAATACTTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCTTTTACGGCTACATCCTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATTATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGAGTGGCCGTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGGGTGTGACCTTCCCGTGCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCCATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCG]


>consensus_8615#0 CCGCCCACGCGTGGTCAACTGGAACGGGTGCGTTATTCTCAGGCGTGCTCGGACGTATCG GACTGCCAAACCAACCCGATCGGGGAGCCCAGTGACCGGACAGCACCTCGTGTGGGGCAG GGTGTGCTTAATCCAACTTTCGCAAAACACTCACAAACACACATCGGAGGTGGGGTAAAC CAGTTCTGAATTGACGTGTTGGTTCGTGTGTTTGTACCCCAATTTTTTGTGTTGGTTCGT TGTTTGTGATTGTTTCGTTCGCGAAGAAACTGGACCGTGTCCCGGACCGGGTTTGTGTGT GCATGTGTGCATGGTTACCAGTCCGTACGCAGAGGTGAACAGTTGGGGTCGTGTTCCGAG CGGCCACAGCTGGAAGGAATTAGTGTGTTAGTGTAGTAAGCTGTAAAAGTATTTTCGCTT GTGATTAAACTCATTGAAGCAGAAGATCCCAACGATTGCTGTTACCAGTGTCCGAGTGGT GCAGAAAGCATAAATTACTTAGCAGACGGCAATCCTGAGGTGACAATAGACGTTCCCTCT GGTGACAATCTTAAGGACATCATGGAGACAAAGCCAGACAGTAAAGTCGACGATGGCATC GACGCTCCGTTGTGGATGTTTTGGAAGCGACGGCGCTACATTGTGGTGTTTATGGCGTTC CTGGGCTTCTTCAACGTCTACTCGCTGCGGGTCAACCTGAGCGTAGCTATCGTTGCGATG ACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCGGATACGAGCAATACTTTGAT TGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCTTTTACGGCTACATCCTGACG CCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATTATGTGTTTGGAGTTGGC ATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGAGTGGCC GTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGGGTGTGACCTTCCCGTGCATT CATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCCATTGCG TTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAATTCTTGCTAAT GCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGGT GGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCG



consensusID : consensus_8615#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 723
fasta sequence
                              [AAGAATCGGCACGNAGGTCACGTCTACTCGCTGCGGGTCAACCTGAGCGTAGCTATCGTTGCGATGACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCGGATACGAGCAATACTTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCTTTTACGGCTACATCCTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATTATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGAGTGGCCGTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGGGTGTGACCTTCCCGTGCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCCATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCGGGAGAA-GGAGTTCATACTGGAGTCGCTGGGACGTACCGAGGGCGAAACACNCAGAAGATCAAGCATTCCGTGGGAAGGGGATCCTTGACGTC-GTGGCCGTATGGGCCATTGGTTGTGTCGC]

[+] EMBL BX469834             [AAGAATCGGCACGNAGGTCACGTCTACTCGCTGCGGGTCAACCTGAGCGTAGCTATCGTTGCGATGACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCGGATACGAGCAATACTTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCTTTTACGGCTACATCCTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATTATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGAGTGGCCGTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGGGTGTGACCTTCCCGTGCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCCATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCGGGAGAACGGAGTTCATACTGGAGTCGCTGGGACGTACCGAGGGCGAAACACNCAGAAGATCAAGCATTCCGTGGGAAGGGGATCCTTGACGTC GTGGCCGT                     ]
[+] EMBL BM578794             [                                                          ccGCGATGACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCGGATACGAGCAATACTTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCTTTTACGGCTACATCCTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATTATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGAGTGGCCGTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGGGTGTGACCTTCCCGTGCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCCATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCGGGAGAA GGAGTTCATACTGGAGTCGCTGGGACGTACCGAGGGCG AACA ACAGAAGATCAAGCA TCCGT GGAAGGGCATCCCTGACGTCGGTGGCCGTATGGGCCATTGGTTGTGTCGC]
[+] EMBL BX628175             [                                                                                                                                                                                                              ggCGANCCGATTCGGGGGCAATTATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGAGTGGCCGTCTTGCTGGCGGTGCGCATTGTGGAAGGCATATTTGAGGGTGTGACCTTCCCGTGCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGCATGGCGTCGATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGCGTATTCTACGTGTTTGGTGTGATTGGATGCATTTGGTTCGTGGCATGGATGTTCTTTGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCGGGAGAA GGAGTTCATACTGGAGTCGCTGGG                                                                                            ]


>consensus_8615#1 AAGAATCGGCACGNAGGTCACGTCTACTCGCTGCGGGTCAACCTGAGCGTAGCTATCGTT GCGATGACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCGGATACGAGCAATAC TTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCTTTTACGGCTACATC CTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATTATGTGTTTGGA GTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGA GTGGCCGTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGGGTGTGACCTTCCCG TGCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCC ATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAATTCTT GCTAATGCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGATTGGATGCATCTGG TTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAG CGGGAGAAGGAGTTCATACTGGAGTCGCTGGGACGTACCGAGGGCGAAACACNCAGAAGA TCAAGCATTCCGTGGGAAGGGGATCCTTGACGTCGTGGCCGTATGGGCCATTGGTTGTGT CGC



consensusID : consensus_8615#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence
                              [CCAGAATCNCCACGAGNTAGAGGGTGTGACTTCCCGTGCCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCGATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGCGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGTGTGTTCTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCGGGAGAAGGAGTTCATACTGGAGTCGCTGGGACGTACCGAGGGCGAACAGCAGAAGATCAAGCATCCGTGGAAGGGCATCCTGACGTCGGTGGCCGTATGGGCATTGGTTGTGTCGCACTTCTCGGAGAACTGGGGCTTTTACACGCTGCTCACCCAGCTGCCAACGTTTNTGAAAGATGCTATGCACTTTGAGCTGGAGAAGACGGGCTTCGTCTCGGCCGTACCGTATCTGGTGATGGGCATCCTCCTGTTCGTGTCCGGATACCTTGCCGATTGGTGTCAGGTGAAGGGCTACCTCACCACTACGCAAGTCCGT]

[+] EMBL BX466146             [CCAGAATCNCCACGAGNTAGAGGGTGTGACTTCCCGTGCCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCGATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGCGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGTGTGTTCTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCGGGAGAAGGAGTTCATACTGGAGTCGCTGGGACGTACCGAGGGCGAACAGCAGAAGATCAAGCATCCGTGGAAGGGCATCCTGACGTCGGTGGCCGTATGGGCATTGGTTGTGTCGCACTTCTCGGAGAACTGGGGCTTTTACACGCTGCTCACCCAGCTGCCAACGTTTNTGAAAGATGCTATGCACTTTGAGCTGGAGAAGACGGGCTTCGTCTCGGCCGTACCGTATCTGGTGATGGGCATCCTCCTGTTCGTGTCCGGATACCTTGCCGATTGGTGTCAGGTGAAGGGCTACCTCACCACTACGCAAGTCCGT]


>consensus_8615#2 CCAGAATCNCCACGAGNTAGAGGGTGTGACTTCCCGTGCCATTCATGCCGTGTGGTCCCG GTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCGATTGCGTTCGCCGGCAACTACGC GGGCACGGTCGTAGCGATGCCGATGAGCGGAATTCTTGCTAATGCCTGGGGCTGGGAGAG TGTGTTCTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGTGGCATGGATGTTCTTCGT CAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCGGGAGAAGGAGTTCATACTGGA GTCGCTGGGACGTACCGAGGGCGAACAGCAGAAGATCAAGCATCCGTGGAAGGGCATCCT GACGTCGGTGGCCGTATGGGCATTGGTTGTGTCGCACTTCTCGGAGAACTGGGGCTTTTA CACGCTGCTCACCCAGCTGCCAACGTTTNTGAAAGATGCTATGCACTTTGAGCTGGAGAA GACGGGCTTCGTCTCGGCCGTACCGTATCTGGTGATGGGCATCCTCCTGTTCGTGTCCGG ATACCTTGCCGATTGGTGTCAGGTGAAGGGCTACCTCACCACTACGCAAGTCCGT



consensusID : consensus_8615#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence
                              [CCGCGGACGCGTGGGCGATGACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCGGATACGAGCAATACTTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCTTTTACGGCTACATCCTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATTATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGAGTGGCCGTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGGGTGTGACCTTCCCGTGCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCCATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCGGGAGAAGGAGTTCATACTGG]

[+] EMBL BM639157             [CCGCGGACGCGTGGGCGATGACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCGGATACGAGCAATACTTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCTTTTACGGCTACATCCTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATTATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGAGTGGCCGTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGGGTGTGACCTTCCCGTGCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGTCCCGTATGGCGTCCATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCGGGAGAAGGAGTTCATACTGG]


>consensus_8615#3 CCGCGGACGCGTGGGCGATGACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCG GATACGAGCAATACTTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCT TTTACGGCTACATCCTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCA ATTATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGG CCGCCAAGGCGGGAGTGGCCGTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGG GTGTGACCTTCCCGTGCATTCATGCCGTGTGGTCCCGGTGGGCTCCACCGACCGAACGGT CCCGTATGGCGTCCATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGA TGAGTGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGA TTGGATGCATCTGGTTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACA AGTGGATCAGCCAGCGGGAGAAGGAGTTCATACTGG



consensusID : consensus_8615#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence
                              [GGGGTCCTGTTCCGAGCGGCCACAGCTGGAAGGAATTAGTGTGTTAGTGTAGTAAGCTGTATAAAGTATTTTCGCTTGTGATTAAACTCATTGAAGCAGAAGATCCCAACGATTGCTGTTACCAGTGTCCGAGTGGTGCAGAAAGCATAAATTACTTAGCAGACGGCAATCCTGAGGTGACAATAGACGTTCCCTCTGGTGACAATCTTAAGGACATCATGGAGACAAAGCCAGACAGTAAAGTCGAGAGCAATACTTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTNCTTTTACGGCTACATCCTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATNATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTAG]

[+] EMBL BX619379             [GGGGTCCTGTTCCGAGCGGCCACAGCTGGAAGGAATTAGTGTGTTAGTGTAGTAAGCTGTATAAAGTATTTTCGCTTGTGATTAAACTCATTGAAGCAGAAGATCCCAACGATTGCTGTTACCAGTGTCCGAGTGGTGCAGAAAGCATAAATTACTTAGCAGACGGCAATCCTGAGGTGACAATAGACGTTCCCTCTGGTGACAATCTTAAGGACATCATGGAGACAAAGCCAGACAGTAAAGTCGAGAGCAATACTTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTNCTTTTACGGCTACATCCTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATNATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTAG]


>consensus_8615#4 GGGGTCCTGTTCCGAGCGGCCACAGCTGGAAGGAATTAGTGTGTTAGTGTAGTAAGCTGT ATAAAGTATTTTCGCTTGTGATTAAACTCATTGAAGCAGAAGATCCCAACGATTGCTGTT ACCAGTGTCCGAGTGGTGCAGAAAGCATAAATTACTTAGCAGACGGCAATCCTGAGGTGA CAATAGACGTTCCCTCTGGTGACAATCTTAAGGACATCATGGAGACAAAGCCAGACAGTA AAGTCGAGAGCAATACTTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTT NCTTTTACGGCTACATCCTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGG GCAATNATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGACGCTGTAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8615#1      AAGAATCGGCACGNAGGTCACGTCTACTCGCTGCGGGTCAACCTGAGCGTAGCTATCGTT 60
consensus_8615#2      ------------------------------------------------------------
consensus_8615#3      ----------------------------------------------CCGCGGACGCGTGG 14
consensus_8615#0      ----------------CCGCCCACGCGTGGTCAACTGGAACGGGTGCGTTATTCTCAGGC 44
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      GCGATGACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCGGATACGAGCAATAC 120
consensus_8615#2      ------------------------------------------------------------
consensus_8615#3      GCGATGACGGAGAACCGGACCGTACACTACGAAAACGGCACCGTCGGATACGAGCAATAC 74
consensus_8615#0      GTGCTCGGACGTATCGGACTGCCAAACCAACCCGATCGGGGAGCCCAGTGACCGGACAGC 104
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      TTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCTTTTACGGCTACATC 180
consensus_8615#2      ------------------------------------------------------------
consensus_8615#3      TTTGATTGGAGCTCCAGCCTGCAAGGTTACGTGCTGAGCTCGTTCTTTTACGGCTACATC 134
consensus_8615#0      ACCTCGTGTGGGGCAGGGTGTGCTTAATCCAACTTTCGCAAAACACTCACAAACACACAT 164
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      CTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATTATGTGTTTGGA 240
consensus_8615#2      ------------------------------------------------------------
consensus_8615#3      CTGACGCCCTTCCTGGGTGGCTTCATCTCGAACCGATTCGGGGGCAATTATGTGTTTGGA 194
consensus_8615#0      CGGAGGTGGGGTAAACCAGTTCTGAATTGACGTGTTGGTTCGTGTGTTTGTACCCCAATT 224
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      GTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGA 300
consensus_8615#2      ------------------------------------------------------------
consensus_8615#3      GTTGGCATTGGTACGACTGCCGTCCTGACGCTGTTGACACCGCTGGCCGCCAAGGCGGGA 254
consensus_8615#0      TTTTGTGTTGGTTCGTTGTTTGTGATTGTTTCGTTCGCGAAGAAACTGGACCGTGTCCCG 284
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      GTGGCCGTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGGGTGTGACCTTCCCG 360
consensus_8615#2      -------------------CCAGAATCNCCACGAGN----TAGAGGGTGTGAC-TTCCCG 36
consensus_8615#3      GTGGCCGTCCTGCTGGCGGTGCGCATTGTGGAAGGCATCTTTGAGGGTGTGACCTTCCCG 314
consensus_8615#0      GACCGGGTTTGTGTGTGCATGTGTGCATGGTTACCAGTCCGTACGCAGAGGTGAACAGTT 344
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      TGC-ATTCATGCCGTGTGGTCCCGG-TGGGCTCCACCGACCGAACGGTCCCGTATGGCGT 418
consensus_8615#2      TGCCATTCATGCCGTGTGGTCCCGG-TGGGCTCCACCGACCGAACGGTCCCGTATGGCGT 95
consensus_8615#3      TGC-ATTCATGCCGTGTGGTCCCGG-TGGGCTCCACCGACCGAACGGTCCCGTATGGCGT 372
consensus_8615#0      GGGGTCGTGTTCCGAGCGGCCACAGCTGGAAGGAATTAGTGTGTTAGTGTAGTAAGCTGT 404
consensus_8615#4      GGGGTCCTGTTCCGAGCGGCCACAGCTGGAAGGAATTAGTGTGTTAGTGTAGTAAGCTGT 60
                       *       * *** * ** * * * ***     *           **   *** *  **

consensus_8615#1      C--CATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAAT 476
consensus_8615#2      C--GATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGCGGAAT 153
consensus_8615#3      C--CATTGCGTTCGCCGGCAACTACGCGGGCACGGTCGTAGCGATGCCGATGAGTGGAAT 430
consensus_8615#0      A-AAAGTATTTTCGCTTGTGATTAAACTCATTGAAGCAGAA-GATCCCAACGATTG---C 459
consensus_8615#4      ATAAAGTATTTTCGCTTGTGATTAAACTCATTGAAGCAGAA-GATCCCAACGATTG---C 116
                          * *   *****  *  * **  *         *  *  *** ** * **  *    

consensus_8615#1      TCTTGCTAATGCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGATTGGATGCAT 536
consensus_8615#2      TCTTGCTAATGCCTGGGGCTGGGAGAGTGTGTTCTACGTGTTTGGTGTGATTGGATGCAT 213
consensus_8615#3      TCTTGCTAATGCCTGGGGCTGGGAGAGCGTATTTTACGTGTTTGGTGTGATTGGATGCAT 490
consensus_8615#0      TGTTACCAGTGTCCGAG--TGGTGCAGAAAGCATAAATTACTTAGCA-GACGGCAATCCT 516
consensus_8615#4      TGTTACCAGTGTCCGAG--TGGTGCAGAAAGCATAAATTACTTAGCA-GACGGCAATCCT 173
                      * ** * * ** * * *  ***   **        *  *  ** *   **  * *  * *

consensus_8615#1      CTGGTTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCA- 595
consensus_8615#2      CTGGTTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCA- 272
consensus_8615#3      CTGGTTCGTGGCATGGATGTTCTTCGTCAAGACATCGCCCGAGGTGGACAAGTGGATCA- 549
consensus_8615#0      GAGGTG---ACAATAGACGTTCCCTCTGGTGACAAT-CTTAAGGACATCATGGAGACAAA 572
consensus_8615#4      GAGGTG---ACAATAGACGTTCCCTCTGGTGACAAT-CTTAAGGACATCATGGAGACAAA 229
                        ***       ** ** ****    *   ****   *   ***    ** *  **  * 

consensus_8615#1      GCCAGCGGGAGAAGGAGTTCATACTGGAGTCGCTGGGACGTACCGAGGGCGAAACACNCA 655
consensus_8615#2      GCCAGCGGGAGAAGGAGTTCATACTGGAGTCGCTGGGACGTACCGAGGGCGAA-CA-GCA 330
consensus_8615#3      GCCAGCGGGAGAAGGAGTTCATACTGG--------------------------------- 576
consensus_8615#0      GCCAGACAGTAAAGTCGACGATGGCATCGACGCTCCGTTGTGGATGTTTTGGAAGCGACG 632
consensus_8615#4      GCCAGACAGTAAAGTCGA------------------------------------------ 247
                      *****   *  ***  *                                           

consensus_8615#1      GAAGATCAAGCATTCCGTGGGAAGGGGATCCTTGACGTCG-TGGCCGTATGGGCC----- 709
consensus_8615#2      GAAGATCAAGCAT-CCGTGG-AAGGGCATCCT-GACGTCGGTGGCCGTATGGGC------ 381
consensus_8615#3      ------------------------------------------------------------
consensus_8615#0      GCGCTACATTGTGGTGTTTATGGCGTTCCTGGGCTTCTTCAACGTCTACTCGCTGCGGGT 692
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      ------------------------------------------------------------
consensus_8615#2      ------------------------------------------------------------
consensus_8615#3      ------------------------------------------------------------
consensus_8615#0      CAACCTGAGCGTAGCTATCGTTGCGATGACGGAGAACCGGACCGTACACTACGAAAACGG 752
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      ------ATTGGTTGTGTCGC---------------------------------------- 723
consensus_8615#2      ------ATTGGTTGTGTCGCACTTCTCGGAGAACTGGGGCTTTTACACGCTGCTCACCCA 435
consensus_8615#3      ------------------------------------------------------------
consensus_8615#0      CACCGTCGGATACGAGCAATACTTTGATTGGAGCTCCAGCCTGCA-AGGTTACGTGCTGA 811
consensus_8615#4      -------------GAGCAATACTTTGATTGGAGCTCCAGCCTGCA-AGGTTACGTGCTGA 293
                                                                                  

consensus_8615#1      ------------------------------------------------------------
consensus_8615#2      GCTGCCAACGTTTNTGAAAGATGCTATGCACTTTGAGCTGGAGAAGACGGGCTTCGTCTC 495
consensus_8615#3      ------------------------------------------------------------
consensus_8615#0      GCTCGTTC-TTTTACG------GCTACAT-CCTGACGCCCTTCCTGGGTGGCTTCATCTC 863
consensus_8615#4      GCTCGTTNCTTTTACG------GCTACAT-CCTGACGCCCTTCCTGGGTGGCTTCATCTC 346
                                                                                  

consensus_8615#1      ------------------------------------------------------------
consensus_8615#2      GG-CCGTACCGTATCTGGTGATGGGCATCCTCCTGTTCGTG-TCCGGATACCTTGCCGAT 553
consensus_8615#3      ------------------------------------------------------------
consensus_8615#0      GAACCGATTCGGGGGCAATTATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGAC 923
consensus_8615#4      GAACCGATTCGGGGGCAATNATGTGTTTGGAGTTGGCATTGGTACGACTGCCGTCCTGAC 406
                                                                                  

consensus_8615#1      ------------------------------------------------------------
consensus_8615#2      TGGTGTCAGGTGAAGGGCTACCTCACCACTACGCAAGTCCGT------------------ 595
consensus_8615#3      ------------------------------------------------------------
consensus_8615#0      -GCTGTTGACACCGCTGGCCGCCAAGGCGGGAGTGGCCGTCCTGCTGGCGGTGCGCATTG 982
consensus_8615#4      -GCTGTAG---------------------------------------------------- 413
                                                                                  

consensus_8615#1      ------------------------------------------------------------
consensus_8615#2      ------------------------------------------------------------
consensus_8615#3      ------------------------------------------------------------
consensus_8615#0      TGGAAGGCATCTTTGAGGGTGTGACCTTCCCGTGCATTCATGCCGTGTGGTCCCGGTGGG 1042
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      ------------------------------------------------------------
consensus_8615#2      ------------------------------------------------------------
consensus_8615#3      ------------------------------------------------------------
consensus_8615#0      CTCCACCGACCGAACGGTCCCGTATGGCGTCCATTGCGTTCGCCGGCAACTACGCGGGCA 1102
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      ------------------------------------------------------------
consensus_8615#2      ------------------------------------------------------------
consensus_8615#3      ------------------------------------------------------------
consensus_8615#0      CGGTCGTAGCGATGCCGATGAGTGGAATTCTTGCTAATGCCTGGGGCTGGGAGAGCGTAT 1162
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      ------------------------------------------------------------
consensus_8615#2      ------------------------------------------------------------
consensus_8615#3      ------------------------------------------------------------
consensus_8615#0      TTTACGTGTTTGGTGTGATTGGATGCATCTGGTTCGGTGGCATGGATGTTCTTCGTCAAG 1222
consensus_8615#4      ------------------------------------------------------------
                                                                                  

consensus_8615#1      -----------------------------------
consensus_8615#2      -----------------------------------
consensus_8615#3      -----------------------------------
consensus_8615#0      ACATCGCCCGAGGTGGACAAGTGGATCAGCCAGCG 1257
consensus_8615#4      -----------------------------------
                                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)