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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1261 fasta sequence
[GCCAGATCGCCACGAGGTCCGATCGATCGCTGCCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC-GGTGACGATGCCACCGGTGAGCTACAACCCTG-CCGGGACCGATCC-GAAGCCTCACGTGATG-GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG-TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG-CAGGCTACCAA-CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGCTTATTTTGTGTCTGTGTGNGAGATATCATATTTTCTTCTTGTAGTCACCCAAACCACCTCCAACACCAGCTACATCGTGGCGTGTTCGGTTGGCAGTGTCAAATAATTTCATCAATGCTATATTTTTGTTTTCCTCCCCGCAAGCAACGTTTGGTTTCTCCAATTCCAATCCCTTGCTGCAACTGGTGCTTTAATGATCATGAAGCCATCGCACACGGCAGGGACACTCCTGGCTGATCAAGCCATTTGTCTGGATTGGGTTTCGGCCCTAAGGAGTGGGGGAAGAAGAAAAAAAACACCCATTCTCCATGGAGGAACTCTTTCAACGCAATATTGTAGCGTTTGCTGATAAGTTTTGACAGCTTAATATGATACGGGGCTAAACGATGGGGGCAAAAGAAACATTTTGTTTTATGGGTTATCAAAACATAAGCTGGCATAAGGAGGAAGAATTGCGCATTCACTTGTTGATCTGTACAGCGCGANGTAAATTATGTTTTATTATTGAGTGGTTAAATAATGGTAAATATGTATTATTAATAAACTGGAG]
[+] EMBL BX466608 [GCCAGATCGCCACGAGGTTTAATCGATCGCTGCCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCACGGGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGNTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAAACAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAAGCCAAAAAAACCGGACTACGAACCG TTCCATCCTTCCGGNCTATCGATTACATCGCTTCTGGTTAA ]
[+] EMBL AL695264 [ TCCGA GGTTTCTG CCGGGAGAGGTTGAATCTTAGAAAATGT CCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCA CG TCCAGCAG CCCGAGCGCACGTGGTCGAACCGA CTGGATCAC GGTGACGATGCCACCGGTGAGCTA AA CCTGTCTGGGACCGATCCTGAAGCCTCACGTGATGNGAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAG CGCCGTTGGTTGGGCCAGTGG CGATGCCCTATCCCAGCATGCCGGTCCTG CGTACCCGTACCACGG AATCAGTGGTGCAACCAG CGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTAGCTTTTCCGACAGGCTA CAA CAAAAAAA ]
[+] EMBL BM598923 [ CCGATCGATCGCTGCCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGG ]
[+] EMBL BX606593 [ CTACCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAATGCTGCTTGTCGGTGTGTTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGG ]
[+] EMBL BM577166 [ ccGCCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGCTTATTTTGTGTCTGTG ]
[+] EMBL BM605210 [ ccgGCCCGGGAGAGGTTGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAG ]
[+] EMBL BX626007 [ AGAGGTTGAATCTTAGANAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTTTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGCTTATTTTGTGTCTGNGTGNGAGATATCATATTTTCTTCTTGTAGTCAC ]
[+] EMBL BM591150 [ ccgGAATCTTAGAAAATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGAAAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGC ]
[+] EMBL BX619108 [ AATGTCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAGCGCACGTGGTCGAACCGACCTGGATCAC GGTGACGATGCCACCGGTGAGCTACAACCCTG CCGGGACCGATCC GAAGCCTCACGTGATG GAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGTTGG TGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACGGCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGAGGANAACCGAATCCGCGTGTTTACCTTTTCCG CAGGCTACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTNCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGANTCATNTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATNCCTTCCTACCCAGTGATGCTTNATGTGGCATTCAC ]
[+] EMBL BX622289 [ TACCAA CCAAAAAAACCGGACTACGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCCCACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCCCTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGCTTATTTTGTGTCTGTGTGTGAGATATCATATTTTCTTCTTGTAGTCACCCAAACCACCTCCAACACCAGCTACATCGTGGCGTGTTCGGTTGGCAGTGTCAAATAATTTCATCAATGCTATATTTTTGTTTTCCTCCCCGCAAGCAACGTTTGGTTTCTCCAATTCCAATCCCTTGCTGCAACTGGTGCTTTAATGATCATGAAGCCATCGCACACGGCAGGGACACTCCTGGCTGATCAAGCCATTTGTCTGGATTGGGTTTCGGCCCTAAGGAGTGGGGGAAGAAGAAAAAAAACACCCATTCTCCATGGAGGAACTCTTTCAACGCAATATTGTAGCGTTTGCTGATAAGTTTTGACAGCTTAATATGATACGGGGCTAAACGATGGGGGCAAAAGAAACATTTTGTTTTATGGGTTATCAAAACATAAGCTGGCATAAGGAGGAAGAATTGCGCATTCACTTGTTGATCTGTACAGCGCGANGTAAATTATGTTTTATTATTGAGTGGTTAAATAATGGTAAATATGTATTATTAATAAACTGGAG]
consensusID : consensus_8637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence
[CCGGATTTATACCGGGAGAGGTTGAATCTNAAAAATGTCCGTCTGCAATGCTGCTTGTCGGTGTGTTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGCACGCAGACACCACCGCTCCAGCAGNCCCGANGCTGCACGTTGTCGAACCGACCTGGATCACGGTGACGATGCCACCGGTGAGCTACAACCCTGCCGGGACCGATCCGAAGCCTCACGTGATGGAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGATGGTGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACG]
[+] EMBL AL933645 [CCGGATTTATACCGGGAGAGGTTGAATCTNAAAAATGTCCGTCTGCAATGCTGCTTGTCGGTGTGTTACTACCCATCGCGACACTCGCCGCCCCAACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTCCCATCCGGCACGCAGACACCACCGCTCCAGCAGNCCCGANGCTGCACGTTGTCGAACCGACCTGGATCACGGTGACGATGCCACCGGTGAGCTACAACCCTGCCGGGACCGATCCGAAGCCTCACGTGATGGAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGATGGTGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8637#0 GCCAGATCGCCACGAGGTCCGATCGATCGCTGCCCGGGAGAGGTTGAATCTTAGAAAATG 60
consensus_8637#1 ----------------------CCGGATTTATACCGGGAGAGGTTGAATCTNA-AAAATG 37
** ****************** * ******
consensus_8637#0 TCCCGTCTGCAAGTGCTGCTTGTCGGAGTGCTACTACCCATCGCGACACTCGCCGCCCCA 120
consensus_8637#1 TCC-GTCTGCAA-TGCTGCTTGTCGGTGTGTTACTACCCATCGCGACACTCGCCGCCCCA 95
*** ******** ************* *** *****************************
consensus_8637#0 ACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTC 180
consensus_8637#1 ACCGTGCACCTGCAGGACTACTACCCCGAGGCAGCTACCACGCCGGGATACGACACGGTC 155
************************************************************
consensus_8637#0 CCATCCGGAACGCAGACACCACCGCTCCAGCAGCCCCGAG--CGCACGTGGTCGAACCGA 238
consensus_8637#1 CCATCCGGCACGCAGACACCACCGCTCCAGCAGNCCCGANGCTGCACGTTGTCGAACCGA 215
******** ************************ ***** ****** **********
consensus_8637#0 CCTGGATCACGGTGACGATGCCACCGGTGAGCTACAACCCTGCCGGGACCGATCCGAAGC 298
consensus_8637#1 CCTGGATCACGGTGACGATGCCACCGGTGAGCTACAACCCTGCCGGGACCGATCCGAAGC 275
************************************************************
consensus_8637#0 CTCACGTGATGGAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGT 358
consensus_8637#1 CTCACGTGATGGAACCGTACGTTCGATACGTTCCCGTCGCACCGCTGCAGCAGCCGCCGA 335
***********************************************************
consensus_8637#0 TGGTGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACG 418
consensus_8637#1 TGGTGGGCCAGTGGCCGATGCCCTATCCCAGCATGCCGGTCCTGCCGTACCCGTACCACG 395
************************************************************
consensus_8637#0 GCAATCAGTGGTGCAACCAGCCGATGGGCTCGTACCGTCCGTGAGAGAGCTCGAGGTGGA 478
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 GGAAAACCGAATCCGCGTGTTTACCTTTTCCGCAGGCTACCAACCAAAAAAACCGGACTA 538
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 CGAACCGCTTCCATCCTTCCGGCCTATCGATTACATCGCTTCTGGTTAATTTATTCTGCC 598
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 CACTGGAATCATTTGTTACTCCTGTCGTGGTGTTTTTTTGTTGTTGCTGTTTTGGTATCC 658
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 CTTCCTACCCAGTGATGCTTTATGTGGCATTCACACGTTGGATCCGTTCGGGCTTATTTT 718
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 GTGTCTGTGTGNGAGATATCATATTTTCTTCTTGTAGTCACCCAAACCACCTCCAACACC 778
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 AGCTACATCGTGGCGTGTTCGGTTGGCAGTGTCAAATAATTTCATCAATGCTATATTTTT 838
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 GTTTTCCTCCCCGCAAGCAACGTTTGGTTTCTCCAATTCCAATCCCTTGCTGCAACTGGT 898
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 GCTTTAATGATCATGAAGCCATCGCACACGGCAGGGACACTCCTGGCTGATCAAGCCATT 958
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 TGTCTGGATTGGGTTTCGGCCCTAAGGAGTGGGGGAAGAAGAAAAAAAACACCCATTCTC 1018
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 CATGGAGGAACTCTTTCAACGCAATATTGTAGCGTTTGCTGATAAGTTTTGACAGCTTAA 1078
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 TATGATACGGGGCTAAACGATGGGGGCAAAAGAAACATTTTGTTTTATGGGTTATCAAAA 1138
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 CATAAGCTGGCATAAGGAGGAAGAATTGCGCATTCACTTGTTGATCTGTACAGCGCGANG 1198
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 TAAATTATGTTTTATTATTGAGTGGTTAAATAATGGTAAATATGTATTATTAATAAACTG 1258
consensus_8637#1 ------------------------------------------------------------
consensus_8637#0 GAG 1261
consensus_8637#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||