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Anopheles gambiae
cluster # 8709 cluster # 8709       Sequences # 11       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8709#0 length = 857 sequences # 5  
consensus_8709#1 length = 789 sequences # 2  
consensus_8709#2 length = 599 sequences # 2  
consensus_8709#3 length = 583 sequences # 1  
consensus_8709#4 length = 508 sequences # 1  

consensusID : consensus_8709#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 857
fasta sequence
                              [GGGGAAAAGCGGCGGAATTCCTCGAGCACTGTTGGCCTACTG--AATTTGTTTGGCCGCCCGAGGTGCGCGTGCTGTATCATTTTGTAAACCGAGAAAAATTACCATCTCTCCAATAAACAATGGATGATGACGCGGAAACTTACAAATTGTGGCGTATCCGGAAGACAGTGATGCAGCTAAGCCACGATCGGGGCTACTTGGTAACGCAGGATGAATTGGATCAAACGCTGGAACAGTTTAAGGAGCAGTTCGGCGACAAGCCCAGCGAAAAGCGACCTGCACGATCCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTGTACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAACAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCGTCTGGTGTGCTGAAATAGATTCGCTAATAAATTGTTCCGTTTCCGTCCTCCCGGGTGGCGGAAGAATTCACAAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTCCCC]

[-] EMBL CNS08D0G             [GGGGAAAAGCGGCGGAATTCCTCGAGCACTGTTGGCCTACTG  AATTTGTTTGGCCGCCCGAGGTGCGCGTGCTGTATCATTTTGTAAACCGAGAAAAATTACCATCTCTCCAATAAACAATGGATGATGACGCGGAAACTTACAAATTGTGGCGTATCCGGAAAACAGTGATGCAGCTAAGCCACGATCGGGGCTACTTGGTAACGCAGGATGAATTGGATCAAACGCTGGAACAGTTTAAGGAGCAGTTCAGCGACAAGCCCAGCGAAAAGCGACCTGCACGATCCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTGTACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAACAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCGTCTGGTG                                                                                                                 ]
[+] EMBL CNS091MF             [                                   CCTACTGGAAATTTGTTTGGCCGCCCGAGGTGCGCGTGCTGTATCATTTTGTAAA CAAGAAAAATTACCATCTCTCCAATAAACAATGGATGATGACGCGGAAACTTACAAATTGTGGCGTATCCGGAAGACAGTGATGCAGCTAAGCCACGATCGGGGCTACTTGGTAACGCAGGATGAATTGGATCAAACGCTGGAACAGTTTAAGGAGCAGTTCGGCGACAAGCCCAGCGAAAAGCGACCTGCACGATCCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTGTACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAACAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCT                                                                                                                            ]
[+] EMBL CNS09PVB             [                                                 GTTTGGCCGCCCGAGGTGCGCGTGCTGTATCATTTTGTAAACCGAGAAAAATTACCATCTCTCCAATAAACAATGGATGATGACGCGGAAACTTACAAATTGTGGCGTATCCGGAAGACAGTGATGCAGCTAAGCCACGATCGGGGCTACTTGGTAACGCAGGATGAATTGGATCAAACGCTGGAACAGTTTAAGGAGCAGTTCGGCGACAAGCCCAGCGAAAAGCGACCTGCACGATCCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTGTACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAACAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCGTCTGGTGTGCTGAAATAGATTCGCTAATAAATTGTTCCGTTTCCGTCCTCCCGGGTGGCGGAAGAATTCACAAA  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTCCCC]
[-] EMBL CNS091MG             [                                                                                                                                      CGGAAACTTACAAATTGTGGCGTATCCGGAAGACAGTGATGCAGCTAAGCCACGATCGGGGCTACTTGGTAACGCAGGATGAATTGGATCAAACGCTGGAACAGTTTAAGGAGCAGTTCGGCGACAAGCCCAGCGAAAAGCGACCTGCACGATCCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTGTACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAACAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCGTCTGGTGTGCTGAAATAGATTCGCTAATAAATTGTTCCGTTTCCGTCCTCCCGGGTGGCGGAAGAATTCACAAACTACAAAAAAAAAAAAAAAATAAAAAAAAAAAGGC           ]
[-] EMBL CNS09PVC             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCACGATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCCTCTGGTGTGCTGAAATAGATTCGCTAATAAATTGTTCCGTTTCCGTCCTCCCGGGTGGCGGAAGAAT                                                     ]


>consensus_8709#0 GGGGAAAAGCGGCGGAATTCCTCGAGCACTGTTGGCCTACTGAATTTGTTTGGCCGCCCG AGGTGCGCGTGCTGTATCATTTTGTAAACCGAGAAAAATTACCATCTCTCCAATAAACAA TGGATGATGACGCGGAAACTTACAAATTGTGGCGTATCCGGAAGACAGTGATGCAGCTAA GCCACGATCGGGGCTACTTGGTAACGCAGGATGAATTGGATCAAACGCTGGAACAGTTTA AGGAGCAGTTCGGCGACAAGCCCAGCGAAAAGCGACCTGCACGATCCGATCTCATCGTAC TGGTAGCGCACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGACGAACCCA AGATTGGCATCAAAACGATCAAAACGTACTGTACCCGCATGCAGGAGGAAAACATCCACC GCGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGCAGTCGCTCGTCGATA TGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGAGCTGCTGATCAACATAACCG AGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAACAGGAGCTGCTCG CTCGTTACAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCAC GATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCG GTCGCTACATTTCCTACCGTCTGGTGTGCTGAAATAGATTCGCTAATAAATTGTTCCGTT TCCGTCCTCCCGGGTGGCGGAAGAATTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAGGCCACATGTCCCC



consensusID : consensus_8709#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 789
fasta sequence
                              [GGGGGGGGGGGAATTCCTCGAGAACTGTTGGCCCACTGGAGCCAGGAGAAAGAAAATTCACAAACTGTTCCTTGTTTTCTGCTCGGGTTTGCCGTAACAAACAATAACTTTTTCAGCCAACGTACACCAACTGGCTTGCGTGCGTTTAGCTGCGAATTGCTTGCCAGTGCACGTATTTCGTCTACCATCGCGGGGAAGTGTGTTAAAATCGCAAGCATGAATACCTTCTAAACAACAACAAAACAGACCAAACCTGCTTTGCTGGAGAGGGGGGTTTTGCTCGAAGGCTCGGAGGCAAGTTCGGACGTGGTAAAGTAACTACTGTACCCGCATGCAGGAGGAAAACATCCACCGGGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGGAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGGGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAGCAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCCTCTGGCGTGCTGAAATAGATTCGCTAATAAATTGTTCCGTTTCCGTCCTCCCGGGTGGCGGAAGTTTTCACAAACTAAAAAAAAAAAAAAAGGCCACATGTGCCCCACCCCCCCCCC]

[-] EMBL CNS08RZ3             [GGGGGGGGGGGAATTCCTCGAGAACTGTTGGCCCACTGGAGCCAGGAGAAAGAAAATTCACAAACTGTTCCTTGTTTTCTGCTCGGGTTTGCCGTAACAAACAATAACTTTTTCAGCCAACGTACACCAACTGGCTTGCGTGCGTTTAGCTGCGAATTGCTTGCCAGTGCACGTATTTCGTCTACCATCGCGGGGAAGTGTGTTAAAATCGCAAGCATGAATACCTTCTAAACAACAACAAAACAGACCAAACCTGCTTTGCTGGAGAGGGGGGTTTTGCTCGAAGGCTCGGAGGCAAGTTCGGACGTGGTAAAGTAACTACTGTACCCGCATGCAGGAGGAAAACATCCACCGGGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGGAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGGGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAGCAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCCTCTGGCGTGCTGAAATAGATTCGCTAATAAATTGTTCCGTTTCCGTCCTCCCGGGTGGCGGAAGTTT                                                  ]
[+] EMBL CNS08RZ2             [                                                                                                                                                                              ATTTCGTCTACCATCGCGGGGAAGTGTGTTAAAATCGCAAGCATGAATACCTTCTAAACAACAACAACACAGACCAAACCTGCTTTGCTGGAGAGGGGGGTTTTGCTCGAAGGCTCGGAGGCAAGTTCGGACGTGGTAAAGTGACTACTGTACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAGCAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCGTCTGGCGTGCTGAAATAGATTCGCTAATAAATTGTTCCGTTTCCGTCCTCCCGGGTGGCGGAAGAATTCACAAACTAAAAAAAAAAAAAAAGGCCACATGTGCCCCACCCCCCCCCC]


>consensus_8709#1 GGGGGGGGGGGAATTCCTCGAGAACTGTTGGCCCACTGGAGCCAGGAGAAAGAAAATTCA CAAACTGTTCCTTGTTTTCTGCTCGGGTTTGCCGTAACAAACAATAACTTTTTCAGCCAA CGTACACCAACTGGCTTGCGTGCGTTTAGCTGCGAATTGCTTGCCAGTGCACGTATTTCG TCTACCATCGCGGGGAAGTGTGTTAAAATCGCAAGCATGAATACCTTCTAAACAACAACA AAACAGACCAAACCTGCTTTGCTGGAGAGGGGGGTTTTGCTCGAAGGCTCGGAGGCAAGT TCGGACGTGGTAAAGTAACTACTGTACCCGCATGCAGGAGGAAAACATCCACCGGGCTAT CGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGGAGTCGCTCGTCGATATGGCACC GAAATACATTCTGGAGCAGTTTCTCGAATCCGGGCTGCTGATCAACATAACCGAGCACGA GCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAGCAGGAGCTGCTCGCTCGTTA CAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTT TGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTA CATTTCCTACCCTCTGGCGTGCTGAAATAGATTCGCTAATAAATTGTTCCGTTTCCGTCC TCCCGGGTGGCGGAAGTTTTCACAAACTAAAAAAAAAAAAAAAGGCCACATGTGCCCCAC CCCCCCCCC



consensusID : consensus_8709#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 599
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCG-GAGGTGCGCGTGCTGTATCATTTTGTAAACCGAGAAAAATTACCATCTCTCCAATAAACAATGGATGATGACGCGGAAACTTACAAATTGTGGCGTATCCGGAAGACAGTGATGCAGCTAAGCCACGATCGGGGCTACTTGGTAACGCAGGATGAATTGGATCAAACGCTGGAACAGTTTAAGGAGCAGTTCGGCGACAAGCCCAGCGAAAAGCGACCTGCACGATCCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTGTACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAACAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGAT]

[+] EMBL BM610863             [CCGCCCACGCGTCCGCCCACGCGTCCG GAGGTGCGCGTGCTGTATCATTTTGTAAACCGAGAAAAATTACCATCTCTCCAATAAACAATGGATGATGACGCGGAAACTTACAAATTGTGGCGTATCCGGAAGACAGTGATGCAGCTAAGCCACGATCGGGGCTACTTGGTAACGCAGGATGAATTGGATCAAACGCTGGAACAGTTTAAGGAGCAGTTCGGCGACAAGCCCAGCGAAAAGCGACCTGCACGATCCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTGTACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAACAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGAT]
[+] EMBL BM599295             [                        CCGCGAGGTGCGCGTGCTGTATCATTTTGTAAACCGAGAAAAATTACCATCTCTCCAATAAACAATGGATGATGACGCGGAAACTTACAAATTGTGGCGTATCCGGAAGACGGTGATGCAGCTAAGCCACGATCGGGGCTACTTGGTAACGCAGGATGAATTGGATCAAACGCTGGAACAGTTTAAGGAGCAGTTCGGCGACAAGCCCAGCGAAAAGCGACCTGCACGTTCCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTGTACCCGCATGCAGGA                                                                                                                                                                                                                                 ]


>consensus_8709#2 CCGCCCACGCGTCCGCCCACGCGTCCGGAGGTGCGCGTGCTGTATCATTTTGTAAACCGA GAAAAATTACCATCTCTCCAATAAACAATGGATGATGACGCGGAAACTTACAAATTGTGG CGTATCCGGAAGACAGTGATGCAGCTAAGCCACGATCGGGGCTACTTGGTAACGCAGGAT GAATTGGATCAAACGCTGGAACAGTTTAAGGAGCAGTTCGGCGACAAGCCCAGCGAAAAG CGACCTGCACGATCCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCAG ATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTGT ACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGACC CCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTC GAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATG ACGCCGGAGGAAAAACAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGAT



consensusID : consensus_8709#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence
                              [CCGGTCAGGAGAAAGAAAATTCACAAACTGTTCCTTGTTTTCTGCTCGGATTTGCCGTAACAAACAATAACCCACCAGCCAACGTACACCAACTAGCTTGCGTGCGTTCAGCTGCGAATTGCTTGCCAGTGCACGTGTTTCGTCTACCATCGCGGGAAAGTGTGTTAAAATCGCAAGCATGAATACCTTCTAAACAACAACAACACAGACCAAACCTGCTTTGCTGGAGAGGGGGGTTTTGCTCGAAGGCTCGGAGGCAAGTTCGGACGTGGTAAAGTGACTACTGTGCAGGGTACCATCGGCCACGCAAAATGGGTCTGTTTGCAAGCAGACAGAATGCCACCGTCGAGGAAACGGACGTGAGCCTGAACCATCTGTACAAGTATCCACCTCGGTCGGGCAACTACTTCGGAACGCATTTCATCATGGGCGGTGAAAGGTTCGATACTCCCCAGCCGGAAGCGTACTTATTTGGCGAGAATGCTGATTTGAACTTTTTAGGTTCCAAGCCAACCCCCTTCCCTTACCCACCGCCACAAGCGACGGAACCGACGAAAACGCTGAAAAGTCTTGTCAACATTCG]

[+] EMBL BM632519             [CCGGTCAGGAGAAAGAAAATTCACAAACTGTTCCTTGTTTTCTGCTCGGATTTGCCGTAACAAACAATAACCCACCAGCCAACGTACACCAACTAGCTTGCGTGCGTTCAGCTGCGAATTGCTTGCCAGTGCACGTGTTTCGTCTACCATCGCGGGAAAGTGTGTTAAAATCGCAAGCATGAATACCTTCTAAACAACAACAACACAGACCAAACCTGCTTTGCTGGAGAGGGGGGTTTTGCTCGAAGGCTCGGAGGCAAGTTCGGACGTGGTAAAGTGACTACTGTGCAGGGTACCATCGGCCACGCAAAATGGGTCTGTTTGCAAGCAGACAGAATGCCACCGTCGAGGAAACGGACGTGAGCCTGAACCATCTGTACAAGTATCCACCTCGGTCGGGCAACTACTTCGGAACGCATTTCATCATGGGCGGTGAAAGGTTCGATACTCCCCAGCCGGAAGCGTACTTATTTGGCGAGAATGCTGATTTGAACTTTTTAGGTTCCAAGCCAACCCCCTTCCCTTACCCACCGCCACAAGCGACGGAACCGACGAAAACGCTGAAAAGTCTTGTCAACATTCG]


>consensus_8709#3 CCGGTCAGGAGAAAGAAAATTCACAAACTGTTCCTTGTTTTCTGCTCGGATTTGCCGTAA CAAACAATAACCCACCAGCCAACGTACACCAACTAGCTTGCGTGCGTTCAGCTGCGAATT GCTTGCCAGTGCACGTGTTTCGTCTACCATCGCGGGAAAGTGTGTTAAAATCGCAAGCAT GAATACCTTCTAAACAACAACAACACAGACCAAACCTGCTTTGCTGGAGAGGGGGGTTTT GCTCGAAGGCTCGGAGGCAAGTTCGGACGTGGTAAAGTGACTACTGTGCAGGGTACCATC GGCCACGCAAAATGGGTCTGTTTGCAAGCAGACAGAATGCCACCGTCGAGGAAACGGACG TGAGCCTGAACCATCTGTACAAGTATCCACCTCGGTCGGGCAACTACTTCGGAACGCATT TCATCATGGGCGGTGAAAGGTTCGATACTCCCCAGCCGGAAGCGTACTTATTTGGCGAGA ATGCTGATTTGAACTTTTTAGGTTCCAAGCCAACCCCCTTCCCTTACCCACCGCCACAAG CGACGGAACCGACGAAAACGCTGAAAAGTCTTGTCAACATTCG



consensusID : consensus_8709#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence
                              [CCGCGGACGCGTGGGCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTGTACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAGCAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCGTCTGGTGTGCTGAAATAGATTCGCTAATAAATTGTTCCGT]

[+] EMBL BM630308             [CCGCGGACGCGTGGGCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTGTACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCGAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAATGACGCCGGAGGAAAAGCAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCCAGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCGTCTGGTGTGCTGAAATAGATTCGCTAATAAATTGTTCCGT]


>consensus_8709#4 CCGCGGACGCGTGGGCGATCTCATCGTACTGGTAGCGCACAATGATGACCCAACCGACCA GATGTTTGTGTTCTTTCCGGACGAACCCAAGATTGGCATCAAAACGATCAAAACGTACTG TACCCGCATGCAGGAGGAAAACATCCACCGCGCTATCGTCGTCGTGCAAGCCGGTATGAC CCCATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCT CGAATCCGAGCTGCTGATCAACATAACCGAGCACGAGCTTGTCCCGGAGCACGTCGTAAT GACGCCGGAGGAAAAGCAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACATGCTGAT GAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCCAGGTGGT GAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCGTCTGGTGTGCTG AAATAGATTCGCTAATAAATTGTTCCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8709#0      GGGGAAAAGCGGCGGAATTCCTCGAGCACTGTTGGCCTACTGAATTTGTTTGGCCGCCCG 60
consensus_8709#2      --------------------------------CCGCCCAC-GCGTCCGCCCACGCGTCCG 27
consensus_8709#4      ------------------------------------------------------------
consensus_8709#1      ------------------------------------------------------------
consensus_8709#3      ------------------------------------------------------------
                                                                                  

consensus_8709#0      -AGGTGCGCGTGCTGTATCATTTTGTAAACCGAGAAAAATTACCATCTCTCCAATAAACA 119
consensus_8709#2      GAGGTGCGCGTGCTGTATCATTTTGTAAACCGAGAAAAATTACCATCTCTCCAATAAACA 87
consensus_8709#4      ------------------------------------------------------------
consensus_8709#1      -----GGGGGGGGGGGAATTCCTCGAGAACTGTTGGCCCACTGGAGCCAGGAGAAAGAAA 55
consensus_8709#3      ------------------------------------------CCGGTCAGGAGAAAGAAA 18
                                                                                  

consensus_8709#0      ATGGATGATGACGCGGAAACTTACAAATTGTGGCGTATCCGGAAGACAGTGATGCAGCTA 179
consensus_8709#2      ATGGATGATGACGCGGAAACTTACAAATTGTGGCGTATCCGGAAGACAGTGATGCAGCTA 147
consensus_8709#4      ------------------------------------------------------------
consensus_8709#1      ATTCACAAACTGTTCCTTGTTTTCTGCTCGGGTTTGCCGTAACAAACAATAACTTTTTCA 115
consensus_8709#3      ATTCACAAACTGTTCCTTGTTTTCTGCTCGGATTTGCCGTAACAAACAATAACCCA-CCA 77
                                                                                  

consensus_8709#0      AGCCACGATCGGGGCTACTTGGTAACGCAGGATGAATTGGATCAAACGCTGGAACAGTTT 239
consensus_8709#2      AGCCACGATCGGGGCTACTTGGTAACGCAGGATGAATTGGATCAAACGCTGGAACAGTTT 207
consensus_8709#4      ------------------------------------------------------------
consensus_8709#1      GCCAACGTACA--CCAACTGGCTTGCGTGCGTTTAGCTG---CGAATTGCTTGCCAGTGC 170
consensus_8709#3      GCCAACGTACA--CCAACTAGCTTGCGTGCGTTCAGCTG---CGAATTGCTTGCCAGTGC 132
                                                                                  

consensus_8709#0      AAGGAGCAGTTCGGCGACAAGCCCAGCGAAAAGCG----ACCTGCACGATCCGATCTCAT 295
consensus_8709#2      AAGGAGCAGTTCGGCGACAAGCCCAGCGAAAAGCG----ACCTGCACGATCCGATCTCAT 263
consensus_8709#4      ------------------------------CCGCG----GAC-GCGTGGGC-GATCTCAT 24
consensus_8709#1      ACG---TATTTCGTCTACCATCGCGGGGAAGTGTGTTAAAATCGCAAGCATGAATACCTT 227
consensus_8709#3      ACG---TGTTTCGTCTACCATCGCGGGAAAGTGTGTTAAAATCGCAAGCATGAATACCTT 189
                                                      * *        **  *     **  * *

consensus_8709#0      CGTACTGGTAGCG-CACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGA-- 352
consensus_8709#2      CGTACTGGTAGCG-CACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGA-- 320
consensus_8709#4      CGTACTGGTAGCG-CACAATGATGACCCAACCGACCAGATGTTTGTGTTCTTTCCGGA-- 81
consensus_8709#1      CTAAACAACAACA-AAACAGACCAAACCTGCTTTGCTGGAGAGGGGGGTTTTGCTCGA-- 284
consensus_8709#3      CTAAACAACAACAACACAGACCAAACCTGCTTTGCTGGAGAGGGGGGTTTTGCTCGAAGG 249
                      *  *     * *   *        * *          *      * * * *      *  

consensus_8709#0      --CGAACCCAAGATTGG---CATCAAAACGATCAAA-ACGTACTGTACC--CG--CATGC 402
consensus_8709#2      --CGAACCCAAGATTGG---CATCAAAACGATCAAA-ACGTACTGTACC--CG--CATGC 370
consensus_8709#4      --CGAACCCAAGATTGG---CATCAAAACGATCAAA-ACGTACTGTACC--CG--CATGC 131
consensus_8709#1      --AGGCTCGGAGGCAAG---TTCGGACGTGGTAAAGTAACTACTGTACC--CG--CATGC 335
consensus_8709#3      CTCGGAGGCAAGTTCGGACGTGGTAAAGTGACTACT-GTGCAGGGTACCATCGGCCACGC 308
                         *      **    *        *   *   *       *  *****  **  ** **

consensus_8709#0      AGGAGGAAAACATCCAC-------CGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCC- 454
consensus_8709#2      AGGAGGAAAACATCCAC-------CGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCC- 422
consensus_8709#4      AGGAGGAAAACATCCAC-------CGCGCTATCGTCGTCGTGCAAGCCGGTATGACCCC- 183
consensus_8709#1      AGGAGGAAAACATCCAC-------CGGGCTATCGTCGTCGTGCAAGCCGGTATGACCCC- 387
consensus_8709#3      AAAATGGGTCTGTTTGCAAGCAGACAGAATGCCACCGTCGAGGAAACGGACGTGAGCCTG 368
                      *  * *      *   *       *    *  *  ***** * ** * *   *** **  

consensus_8709#0      -ATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCG 513
consensus_8709#2      -ATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCG 481
consensus_8709#4      -ATCAGCAAAGCAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCG 242
consensus_8709#1      -ATCAGCAAAGGAGTCGCTCGTCGATATGGCACCGAAATACATTCTGGAGCAGTTTCTCG 446
consensus_8709#3      AACCATCTGTACAAGTATCCACCTCGGTCGGGC--AACTACTTCGGAACGCATTTCATCA 426
                       * ** *     *      *  *    * *  *  ** *** *      *** **  ** 

consensus_8709#0      AATCCGAGCTGCTGATCAACAT-----AACCGAGCACGAGCTTGTCCCG-GAGCACGTCG 567
consensus_8709#2      AATCCGAGCTGCTGATCAACAT-----AACCGAGCACGAGCTTGTCCCG-GAGCACGTCG 535
consensus_8709#4      AATCCGAGCTGCTGATCAACAT-----AACCGAGCACGAGCTTGTCCCG-GAGCACGTCG 296
consensus_8709#1      AATCCGGGCTGCTGATCAACAT-----AACCGAGCACGAGCTTGTCCCG-GAGCACGTCG 500
consensus_8709#3      TGGGCGGTGAAAGGTTCGATACTCCCCAGCCGGAAGCGTACTTATTTGGCGAGAATGCTG 486
                          **       * ** * *      * ***    **  *** *   * *** * *  *

consensus_8709#0      TAATGA---CGCCGGAGGAAAAACAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACA 624
consensus_8709#2      TAATGA---CGCCGGAGGAAAAACAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACA 592
consensus_8709#4      TAATGA---CGCCGGAGGAAAAGCAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACA 353
consensus_8709#1      TAATGA---CGCCGGAGGAAAAGCAGGAGCTGCTCGCTCGTTACAAACTGAAGGAAAACA 557
consensus_8709#3      ATTTGAACTTTTTAGGTTCCAAGCCAACCCCCTTCCCTTACCCACCGCCACAAGCGACGG 546
                         ***        *     ** *     *   ** **         *   * *  *   

consensus_8709#0      TGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCC 684
consensus_8709#2      TGCTGAT----------------------------------------------------- 599
consensus_8709#4      TGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCC 413
consensus_8709#1      TGCTGATGAGGATACAGGCCGGCGATCCGGTCGCACGATACTTTGGACTGAAGCGTGGCC 617
consensus_8709#3      AACCGACGAAAACGCTGAAAAGTCTTGTCAACATTCG----------------------- 583
                        * **                                                      

consensus_8709#0      AGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCGTCTGG 744
consensus_8709#2      ------------------------------------------------------------
consensus_8709#4      AGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCGTCTGG 473
consensus_8709#1      AGGTGGTGAAAATTATTCGACCCTCGGAAACCGCCGGTCGCTACATTTCCTACCCTCTGG 677
consensus_8709#3      ------------------------------------------------------------
                                                                                  

consensus_8709#0      TGTGCTGAAATAGATTCGCTAATAAATTGTTCCGTTTCCGTCCTCCCGGGTGGCGGAAGA 804
consensus_8709#2      ------------------------------------------------------------
consensus_8709#4      TGTGCTGAAATAGATTCGCTAATAAATTGTTCCGT------------------------- 508
consensus_8709#1      CGTGCTGAAATAGATTCGCTAATAAATTGTTCCGTTTCCGTCCTCCCGGGTGGCGGAAGT 737
consensus_8709#3      ------------------------------------------------------------
                                                                                  

consensus_8709#0      ATTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTCCCC 857
consensus_8709#2      -----------------------------------------------------
consensus_8709#4      -----------------------------------------------------
consensus_8709#1      TTTCACAAACTAAAAAAAAAAAAAAAGGCCACATGTGCCCCACCCCCCCCCC- 789
consensus_8709#3      -----------------------------------------------------
                                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)