cluster # 871

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Anopheles gambiae
cluster # 871 cluster # 871 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_871#0 length = 514 sequences # 1

consensus_871#1 length = 390 sequences # 1

consensusID : consensus_871#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [CCGCGGACGCGTGGGCCGAGACAAGCGACGGATTTTTAGCTTCGCAAATAAAAATTTCGATGCTTAAAAAACGCTTGATTTGATAAAAACAATTTACTTGGGCTGAAAGAAAGAATCCTATTGCAGTTCGCAACATTCTAAAAATCCTAGCTCGTCTATAATCATTAAACTCTTTCTTACTTTCACACGTTGCCAGCCTAGAAAGTTTCCTGAGGTAATTCGGATTCGCTGTGCAGCAGAGCAGGGTAAGAAACAAGGCAAAAATGGTTCCTGAGGCAATTCGGAATCACTATGCTGGAGTTAAAGATGAAAAAAGAGACAAAGTGAGGAAATGTGCAGTGAAAATAGTTTGTGTGTGTGCTTACACTAGAGCTACGGATTAAGGACATCGTGTCGTTTTCTTGTACATCTCACCCGTTGCCGGCGATGTAATAGTTCTTGAGGAAATTCGGAATAAGGCCGTGCTGAAGTGAAGTAAAGTAGAAGAAGTGACACTACAAGGAACCACATTTCG]

[+] EMBL BM651885             [CCGCGGACGCGTGGGCCGAGACAAGCGACGGATTTTTAGCTTCGCAAATAAAAATTTCGATGCTTAAAAAACGCTTGATTTGATAAAAACAATTTACTTGGGCTGAAAGAAAGAATCCTATTGCAGTTCGCAACATTCTAAAAATCCTAGCTCGTCTATAATCATTAAACTCTTTCTTACTTTCACACGTTGCCAGCCTAGAAAGTTTCCTGAGGTAATTCGGATTCGCTGTGCAGCAGAGCAGGGTAAGAAACAAGGCAAAAATGGTTCCTGAGGCAATTCGGAATCACTATGCTGGAGTTAAAGATGAAAAAAGAGACAAAGTGAGGAAATGTGCAGTGAAAATAGTTTGTGTGTGTGCTTACACTAGAGCTACGGATTAAGGACATCGTGTCGTTTTCTTGTACATCTCACCCGTTGCCGGCGATGTAATAGTTCTTGAGGAAATTCGGAATAAGGCCGTGCTGAAGTGAAGTAAAGTAGAAGAAGTGACACTACAAGGAACCACATTTCG]




>consensus_871#0
CCGCGGACGCGTGGGCCGAGACAAGCGACGGATTTTTAGCTTCGCAAATAAAAATTTCGA
TGCTTAAAAAACGCTTGATTTGATAAAAACAATTTACTTGGGCTGAAAGAAAGAATCCTA
TTGCAGTTCGCAACATTCTAAAAATCCTAGCTCGTCTATAATCATTAAACTCTTTCTTAC
TTTCACACGTTGCCAGCCTAGAAAGTTTCCTGAGGTAATTCGGATTCGCTGTGCAGCAGA
GCAGGGTAAGAAACAAGGCAAAAATGGTTCCTGAGGCAATTCGGAATCACTATGCTGGAG
TTAAAGATGAAAAAAGAGACAAAGTGAGGAAATGTGCAGTGAAAATAGTTTGTGTGTGTG
CTTACACTAGAGCTACGGATTAAGGACATCGTGTCGTTTTCTTGTACATCTCACCCGTTG
CCGGCGATGTAATAGTTCTTGAGGAAATTCGGAATAAGGCCGTGCTGAAGTGAAGTAAAG
TAGAAGAAGTGACACTACAAGGAACCACATTTCG

consensusID : consensus_871#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [CCGCCCACGCGTCCGCGGATTTTTAGCTTCGCAAATAAAAATTTCGATGCTTAAAAAACGCTTGATTTGATAAAAACAATTTACTTGGGCTGAAAGAAAGAATCCTATTGCAGTTCGCAACATTCTAAAAATCCTAGCTCGTCTATAATCATTAAACTCTTTCTTACTTTCACACGTTGCCAGCCTAGAAAGTTTCCTGAGGTAATTCGGATTCGCTGTGCAGCAGAGCAGGGTAAGAAACAAGGCAAAAATGGTTCCTGAGGCAATTCGGAATCACTATGCTGGAGTTAAAGATGAAAAAAGAGACAAAGTGAGGAAATGTGCAGTGAAAATAGTTTGTGTGTGTGCTTACACTAGAGCTACGGATTAAGGACATCGTGTCGTTTTCTT]

[+] EMBL BM616315             [CCGCCCACGCGTCCGCGGATTTTTAGCTTCGCAAATAAAAATTTCGATGCTTAAAAAACGCTTGATTTGATAAAAACAATTTACTTGGGCTGAAAGAAAGAATCCTATTGCAGTTCGCAACATTCTAAAAATCCTAGCTCGTCTATAATCATTAAACTCTTTCTTACTTTCACACGTTGCCAGCCTAGAAAGTTTCCTGAGGTAATTCGGATTCGCTGTGCAGCAGAGCAGGGTAAGAAACAAGGCAAAAATGGTTCCTGAGGCAATTCGGAATCACTATGCTGGAGTTAAAGATGAAAAAAGAGACAAAGTGAGGAAATGTGCAGTGAAAATAGTTTGTGTGTGTGCTTACACTAGAGCTACGGATTAAGGACATCGTGTCGTTTTCTT]




>consensus_871#1
CCGCCCACGCGTCCGCGGATTTTTAGCTTCGCAAATAAAAATTTCGATGCTTAAAAAACG
CTTGATTTGATAAAAACAATTTACTTGGGCTGAAAGAAAGAATCCTATTGCAGTTCGCAA
CATTCTAAAAATCCTAGCTCGTCTATAATCATTAAACTCTTTCTTACTTTCACACGTTGC
CAGCCTAGAAAGTTTCCTGAGGTAATTCGGATTCGCTGTGCAGCAGAGCAGGGTAAGAAA
CAAGGCAAAAATGGTTCCTGAGGCAATTCGGAATCACTATGCTGGAGTTAAAGATGAAAA
AAGAGACAAAGTGAGGAAATGTGCAGTGAAAATAGTTTGTGTGTGTGCTTACACTAGAGC
TACGGATTAAGGACATCGTGTCGTTTTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_871#0      CCGCGGACGCGTGGGCCGAGACAAGCGACGGATTTTTAGCTTCGCAAATAAAAATTTCGA 60
consensus_871#1      ------------CCGCCCACGCGTCCG-CGGATTTTTAGCTTCGCAAATAAAAATTTCGA 47
                                   *** *  *   ** ********************************

consensus_871#0      TGCTTAAAAAACGCTTGATTTGATAAAAACAATTTACTTGGGCTGAAAGAAAGAATCCTA 120
consensus_871#1      TGCTTAAAAAACGCTTGATTTGATAAAAACAATTTACTTGGGCTGAAAGAAAGAATCCTA 107
                     ************************************************************

consensus_871#0      TTGCAGTTCGCAACATTCTAAAAATCCTAGCTCGTCTATAATCATTAAACTCTTTCTTAC 180
consensus_871#1      TTGCAGTTCGCAACATTCTAAAAATCCTAGCTCGTCTATAATCATTAAACTCTTTCTTAC 167
                     ************************************************************

consensus_871#0      TTTCACACGTTGCCAGCCTAGAAAGTTTCCTGAGGTAATTCGGATTCGCTGTGCAGCAGA 240
consensus_871#1      TTTCACACGTTGCCAGCCTAGAAAGTTTCCTGAGGTAATTCGGATTCGCTGTGCAGCAGA 227
                     ************************************************************

consensus_871#0      GCAGGGTAAGAAACAAGGCAAAAATGGTTCCTGAGGCAATTCGGAATCACTATGCTGGAG 300
consensus_871#1      GCAGGGTAAGAAACAAGGCAAAAATGGTTCCTGAGGCAATTCGGAATCACTATGCTGGAG 287
                     ************************************************************

consensus_871#0      TTAAAGATGAAAAAAGAGACAAAGTGAGGAAATGTGCAGTGAAAATAGTTTGTGTGTGTG 360
consensus_871#1      TTAAAGATGAAAAAAGAGACAAAGTGAGGAAATGTGCAGTGAAAATAGTTTGTGTGTGTG 347
                     ************************************************************

consensus_871#0      CTTACACTAGAGCTACGGATTAAGGACATCGTGTCGTTTTCTTGTACATCTCACCCGTTG 420
consensus_871#1      CTTACACTAGAGCTACGGATTAAGGACATCGTGTCGTTTTCTT----------------- 390
                     *******************************************                 

consensus_871#0      CCGGCGATGTAATAGTTCTTGAGGAAATTCGGAATAAGGCCGTGCTGAAGTGAAGTAAAG 480
consensus_871#1      ------------------------------------------------------------
                                                                                 

consensus_871#0      TAGAAGAAGTGACACTACAAGGAACCACATTTCG 514
consensus_871#1      ----------------------------------