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Anopheles gambiae
cluster # 8790 cluster # 8790       Sequences # 12       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8790#0 length = 1319 sequences # 8  
consensus_8790#1 length = 714 sequences # 1  
consensus_8790#2 length = 609 sequences # 2  
consensus_8790#3 length = 140 sequences # 1  

consensusID : consensus_8790#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1319
fasta sequence
                              [TTTTTTTTCGTTTACACATTGTATAGAATCAATTTATTTCATTAAATTTAAAATCCCGGGCTACATATGGTTTTGCAGTTTCACCTATATACA-TGACAAACGTTACTCACACGCACCAAATAACCAAATCTGTG-CACTTCTTTTTG-TGTCGCCCCGGACAGACACGGGGAGACGGACCGTCTTCCTCCTCCATCCCCTCGGCATTTTCTAGCACCGTTTGCAAACGAAGTAC-TTTTTTTCTGTCTCTGTCTTAACTAAAGGATTCTCGTGCGCGGCTCGTGGCACGTACATGTCATACATGTGCGCCACAAGGCAAGCAGCAGCAGCATTTCTGCG-TGGCCCG-ACGAAAACAACCGCCC--AAAATGCTTTC-TTTTTTTTACAACGAACAAAATGCGTATCTC-GTGTTATTGTACAATCGTGAATTGATTTTGAATCAATTTTACGTTTCTGTCTTTCGTGCCAAAAACCCTCCACTGTTAGTGTGCCTGTGCCTGGGTAGTTTGGTTTGTTTCCCGGGTTGCAAATAGTCCCTTCTCAGAGTGTGGTCTACGACGATCTTCCTTAAAAACGGCGTCTATGGGTGTGTGT---------T-TTGTATATATTGTTGTCAATTTAATTTAACTAGCACGCGTCTCAATACAT---CGGGTGGCGACGCAATTTTAACTGTATATAATTTACGAGCTTTTTGTTTAAACA-CATTTTCTGCAAAACTAAAAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGTGCGCCCGGCGGTGGGTGGTGCCTTTTTAAGTAAAGAAATACGTTAGGAAAAG-AAGCGCTCCCGCTAAACAGGCTCCGCTTCAAACGCGTTGTTAAATATATAGAAGTGGCAATGTAGCTGCTTGGCTAAACTTTTCGCCTTCCTTTCCTTGCCCGATTCCGTTCCTCTCTCTCCACATCCGAACGCCGAATCTTGAAAGTGCACAATATTATGTTTCTATGCTATTTTTCACCTCAACCCAACTCACTAACGGTTTAGCACCACTGACGTGTAAGTAATTGTCTGCTGTAACTGGGTGTTTGACATTTTTGCTTACAATATATAAGTAGATTTTCTGCTCGCACTTTCTCCCCTCATCCATCGTGTGTCTGCACTAAAACTGGCTGAGTGTGGAGTACGGACCCCTAATCCTTCCTGTACCTTAAATTTCATTTGGTATATTGCCGTGCGATCTTTTAGATCACATTTTCAGTAGCGTGCACAGGGGCATCTCATCATCATTGCGCCTAATTTCCATCGTTCCGCACATTCATTGCACCTGTGAGAATAGTGTGCGG]

[+] EMBL AGA284497            [TTTTTTTTCGTTTACACATTGTATAGAATCAATTTATTTCATTAAATTTAAAATCCCGGGCTACATATGGTTTTGCAGTTTCACCTATATACA TGACAAACGTTACTCACACGCACCAAATAACCAAATCTGTG CACTTCTTTTTG TGTCGCCCCGGACAGACACGGGGAGACGGACCGTCTTCCTCCTCCATCCCCTCGGCATTTTCTAGCACCGTTTGCAAACGAAGTACTTTTTTTTCTGTCTCTGTCTTAACTAAAGGATTCTCGTGCGCGGCTCGTGGCACGTACATGTCATACATGTGCGCCACAAGGCAAGCAGCAGCAGCATTTCTGCG TGGCCCG ACGAAAACAAACGCCC  AAAATGCTTTC TTTTTTTTACAACGAACAAAATGCGTATCCC GTGTTATTGTACAATCCTTAATTGATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CNS099Q9             [                                 TTATTTCATTAAATTTAAAATCCCGGGCTACATATGGTTTTGCAGTTTCACCTATATACA TGACAAACGTTACTCACACGCACCAAATAACCAAATCTGTG CACTTCTTTTTGATGTCGCCCCGGACAGACACGGGGAGACGGACCGTCTTCCTCCTCCATCCCCTCGGCATTTTCTAGCACCGTTTGCAAACGAAGTAC TTTTTTTCTGTCTCTGTCTTAACTAAAGGATTCTCGTGCGCGGCTCGTGGCACGTACATGTCATACATGTGCGCCACAAGGCAAGCAGCAGCAGCATTTCTGCG TGGCCCG ACGAAAACAACCGCCC  AAAATGCTTTCTTTTTTTTTACAACGAACAAAATGCGTATCTC GTGTTATTGTACAATCGTGAATTGATTTTGAATCAATTTTACGTTTCTGTCTTTCGTGCCAAAAACCCTCCACTGTTAGTGTGCCTGTCCCTGGGTAGTTTGGTTTGTTTCCCGGGTTGCAAATAGTCCCTTCTCAGAGTGTGGTCTACGACGATCTTCCTTAAAAACGGCGTCTATGGGTGTGTGT         T TTGTATATATTGTTGTCAATTTAATTTAACTAGCACGCGTCTCAATACAT   CGGGTGGCGACGCAATTTTAACTGTATATAATTTACGAGCTTTTTGTTTAAACA CATTTTCTGCAAAACTAAAAGTCTGACTCTCGCGTCTCCCTACCCGCCCACCGGTTTCATCACACTGGTGCGCCCGGCGGTGGGTGGTGCCTTTTTAAGTAAAGAAATACGTTAGGAAAAG AAGCGCTCCCGCTAAACAGGCTCCGCTTCAAACGCGTTGTTAAATATATAGAAGTGGCAATGTAGCTGCTTGGCTAAACTTCTCGCCTTCCT                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CNS099Q8             [                                       CATTAAATTTAAAATCCCGGGCTACATATGGTTTTGCAGTTTCACCTATATACA TGACAAACGTTACTCACACGCACCAAATAACCAAATCTGTG CACTTCTTTTTG TGTCGCCCCGGACAGACACGGGGAGACGGACCGTCTTCCTCCTCCATCCCCTCGGCATTTTCTAGCACCGTTTGCAAACGAAGTAC TTTTTTTCTGTCTCTGTCTTAACTAAAGGATTCTCGTGCGCGGCTCGTGGCACGTACATGTCATACATGTGCGCCACAAGGCAAGCAGCAGCAGCATTTCTGCG TGGCCCG ACGAAAACAACCGCCC  AAAATGCTTTCTTTTTTTTTACAACGAACAAAATGCGTATCTC GTGTTATTGTACAATCGTGAATTGATTTTGAATCAATTTTACGTTTCTGTCTTTCGTGCCAAAAACCCTCCACTGTTAGTGTGCCTGTGCCTGGGTAGTTTGGTTTGTTTCCCGGGTTGCAAATAGTCCCTTCTCAGAGTGTGGTCTACGACGATCTTCCTTAAAAACGGCGTCTATGGGTGTGTGT         G TTGTATATATTGTTGTCAATTTAATTTAACTAGCACGCGTCTCAATACAT   CGGGTGGCGACGCAATTTTAACTGTATATAATTTACGAGCTTTTTGTTTAAACA CATTTTCTGCAAAACTAAAAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGTGCGCCCGGCGGTGGGTGGTGCCTTTTTAAGTAAAGAAATACGTTAGGAAAAG AAGCGCTCCCGCTAAACAGG TCCGCTTCAAACGCGTTGTTAAATATATAGAAGTGGCAATGTAGCTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CNS09DK3             [                                                                                        ATACACTGACAAACGTTACTCACACGCACCAAATAACCAAATCTGTGCCACTTCTTTTTG TGTCGCCCCGGACAGACACGGGGAGACGGACCGTCTTCCTCCTCCATCCCCTCGGCATTTTCTAGCACCGTTTGCAAACGAAGTAC TTTTTTTCTGTCTCTGTCTTAACTAAAGGATTCTCGTGCGCGGCTCGTGGCACGTACATGTCATACATGTGCGCCACAAGGCAAGCAGCAGCAGCATTTCTGCGCTGGCCCGCACGAAAACAACCGCCC  AAAATGCTTTCTTTTTTTTTACAACGAACAAAATGCGTATCTCTCTGTTATTGTACAATCGTGAATTGATTTTGAATCAATTTTACGTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL BM580458             [                                                                                                                                                                                                                                                                                                             CATGTGCGCCACAAGGCAAGCAGCAGCAGCATTTCTGCG TGGCCCG ACGAAAACAACCGCCC  AAAATGCTTTC  TTTTTTTACAACGAACAAAATGCGTATCTC GTGTTATTGTACAATCGTGAATTGATTTTGAATCAATTTTACGTTTCTGTCTTTCGTGCCAAAAACCCTCCACTGTTAGTGTGCCTGTGCCTGGGTAGTTTGGTTTGTTTCCCGGGTTGCAAATAGTCCCTCCTCGGAGTGTGGTCTACGACGATCTTCCTTAAAAACGGCGTGTATGGGTGTGTGTGTGTGAGTGTGTTGTATATATTGTTGCCAATTTAATTTAACTAGCACGCGTCTCAATACAT   CGGGTGGCGACGCAATTTTAACTGTATATAATTTACGAGCTTCCCGTTTAAACA CATTTTCTG AAAACTAAAAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGTGCGCCCcgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL BM590970             [                                                                                                                                                                                                                                                                                                               TGTGCGCCACAAGGCAAGCAGCAGCAGCATTTCTGCG TGGCCCG ACGAAACCACCCGCCCCAAAAATGCTTTC TTTTTTTTACAACGAACAAAATGCGTATCTC GTGTTATTGTACAATCGTGAATTGATTTTGAATCAATTTTACGTTTCTGTCTTTCGTGCCAAAAACCCTCCACTGTTAGTGTGCCTGTGCCTGGGTAGTTTGGTTTGTTTCCCGGGTTGCAAATAGTCCCTCCTCGGA     GTCTACGACGATCTTCCTTAAAAACGGCGTGTATGGGTGTGTGTGAGTG    TGTTGTATATATTGTTGTCAATTTAATTTAACTAGCACGCGTCTCAATACATGAGCGTGTGGCGACGCAAATTTAACTGTATATAATTTACGAGCTTTTTGTTTAAACA CATTTTCTG AAAACTAAAAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGTGCGCCCGGCGGGGGGTGGTGCCTTTTTAAGTAAAGAAATACGTTAGGAAAAG AAGCGCTCCCGCTAAACAGGCTCCGCTTCAAACGCGTTGTTAAATATATAGAAGTGGCAATGTAGCTGCTTGGCTAAACTTTTCGCCTTCCTTTCCTTGCCCGATTCCGTTCCTCTCTCTCCACATCCGAACGCCGAATCTTGAAAGTGCACAATATTATGTTTCTATGCTAT                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CNS09DK2             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGCGTCTATGGGTGAGTGT         G TTGTATATATTGTTGTCAATTTAATTTAACTAGCACGCGTCTCAATACAT   CGGGTGGCGACGCAATTTTAACTGTATATAATTTACGAGCTTTTTGTTTAAACAGCATTTTCTGCAAAACTAAAAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGTGCGCCCGGCGGTGGGTGGTGCCTTTTTAAGTAAAGAAATACGTTAGGAAAAGAAAGCGCTCGCGCgct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL BM643070             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGTGCGCCCGGCGGGGGGTGGTGCCTTTTTAAGTAAAGAAATACGTTAGGAAAAG AAGCGCTCCCGCTAAACAGGCTCCGCTTCAAACGCGTTGTTAAATATATAGAAGTGGCAATGTAGCTGCTTGGCTAAACTTTTCGCCTTCCTTTCCTTGCCCGATTCCGTTCCTCTCTCTCCACATCCGAACGCCGAATCTTGAAAGTGCACAATATTATGTTTCTATGCTATTTTTCACCTCAACCCAACTCACTAACGGTTTAGCACCACTGACGTGTAAGTAATTGTCTGCTGTAACTGGGTGTTTGACATTTTTGCTTACAATATATAAGTAGATTTTCTGCTCGCACTTTCTCCCCTCATCCATCGTGTGTCTGCACTAAAACTGGCTGAGTGTGGAGTACGGACCCCTAATCCTTCCTGTACCTTAAATTTCATTTGGTATATTGCCGTGCGATCTTTTAGATCACATTTTCAGTAGCGTGCACAGGGGCATCTCATCATCATTGCGCCTAATTTCCATCGTTCCGCACATTCATTGCACCTGTGAGAATAGTGTGCGG]


>consensus_8790#0 TTTTTTTTCGTTTACACATTGTATAGAATCAATTTATTTCATTAAATTTAAAATCCCGGG CTACATATGGTTTTGCAGTTTCACCTATATACATGACAAACGTTACTCACACGCACCAAA TAACCAAATCTGTGCACTTCTTTTTGTGTCGCCCCGGACAGACACGGGGAGACGGACCGT CTTCCTCCTCCATCCCCTCGGCATTTTCTAGCACCGTTTGCAAACGAAGTACTTTTTTTC TGTCTCTGTCTTAACTAAAGGATTCTCGTGCGCGGCTCGTGGCACGTACATGTCATACAT GTGCGCCACAAGGCAAGCAGCAGCAGCATTTCTGCGTGGCCCGACGAAAACAACCGCCCA AAATGCTTTCTTTTTTTTACAACGAACAAAATGCGTATCTCGTGTTATTGTACAATCGTG AATTGATTTTGAATCAATTTTACGTTTCTGTCTTTCGTGCCAAAAACCCTCCACTGTTAG TGTGCCTGTGCCTGGGTAGTTTGGTTTGTTTCCCGGGTTGCAAATAGTCCCTTCTCAGAG TGTGGTCTACGACGATCTTCCTTAAAAACGGCGTCTATGGGTGTGTGTTTTGTATATATT GTTGTCAATTTAATTTAACTAGCACGCGTCTCAATACATCGGGTGGCGACGCAATTTTAA CTGTATATAATTTACGAGCTTTTTGTTTAAACACATTTTCTGCAAAACTAAAAGTCTGAC TCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGTGCGCCCGGCGGTGGGTGG TGCCTTTTTAAGTAAAGAAATACGTTAGGAAAAGAAGCGCTCCCGCTAAACAGGCTCCGC TTCAAACGCGTTGTTAAATATATAGAAGTGGCAATGTAGCTGCTTGGCTAAACTTTTCGC CTTCCTTTCCTTGCCCGATTCCGTTCCTCTCTCTCCACATCCGAACGCCGAATCTTGAAA GTGCACAATATTATGTTTCTATGCTATTTTTCACCTCAACCCAACTCACTAACGGTTTAG CACCACTGACGTGTAAGTAATTGTCTGCTGTAACTGGGTGTTTGACATTTTTGCTTACAA TATATAAGTAGATTTTCTGCTCGCACTTTCTCCCCTCATCCATCGTGTGTCTGCACTAAA ACTGGCTGAGTGTGGAGTACGGACCCCTAATCCTTCCTGTACCTTAAATTTCATTTGGTA TATTGCCGTGCGATCTTTTAGATCACATTTTCAGTAGCGTGCACAGGGGCATCTCATCAT CATTGCGCCTAATTTCCATCGTTCCGCACATTCATTGCACCTGTGAGAATAGTGTGCGG



consensusID : consensus_8790#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 714
fasta sequence
                              [CCGCCCACGCGTCCGGCAAGAGAGATTGCGGCGTGCGGTGTGTGAACTGGTGAAGAGCGGTCCAGTAAAGCGGGCAAAAGAGAGAAAGAAGAATCCGCAGTACGTGTGACAGAGAGTCGCCGAAGCAGACGTGCGTGTGTGTGTGTGGTTTTGTGATTTGCTAGAGTGAGAAAGGAGGAAAGCAGAGCTGGAACCGTGAGCTGTGGTGGTGCGGTGTGACAACGAAGCATGCCGATGCGTGGCTGAGTGGATGCATGTGTGTAGGTGTGTGAATGCAACAGCACAAACAAGACGGGCGCCGCTAGTGTGTGAGTGTGTATCCTTGGTGAACCAGTAGGGAACGCGTGCAAGTAGTGGTAGGCCCCCCCAAACTGGCCTGCTGGGGTTGTTGACCGTAACAGGCAAAACAGCGAAAGAGAGCAAAGGAACCACATCAATGCATAGTGAGGATGATCTAATTGCTCGAGCACACAACCACCATCAGCAGCAGCAAACGACACAGCAGATCACGACCATCACGAAGGTCGTGCGGGAGGTGAAGCAGTTGGGACCGGATGCTGGACAACCGTTCGACTATGTAGCAATGCCTCTAGACATGGGAACCGACGGTCAACCGATCGACTACGTGTCGATGCCGATGGGTATGTACACGACCCGGACGCAGTACTTGAACTTCAACCACATGGACCAGCCGGAGCAGATGGTGGGTGGGGG]

[+] EMBL BM594850             [CCGCCCACGCGTCCGGCAAGAGAGATTGCGGCGTGCGGTGTGTGAACTGGTGAAGAGCGGTCCAGTAAAGCGGGCAAAAGAGAGAAAGAAGAATCCGCAGTACGTGTGACAGAGAGTCGCCGAAGCAGACGTGCGTGTGTGTGTGTGGTTTTGTGATTTGCTAGAGTGAGAAAGGAGGAAAGCAGAGCTGGAACCGTGAGCTGTGGTGGTGCGGTGTGACAACGAAGCATGCCGATGCGTGGCTGAGTGGATGCATGTGTGTAGGTGTGTGAATGCAACAGCACAAACAAGACGGGCGCCGCTAGTGTGTGAGTGTGTATCCTTGGTGAACCAGTAGGGAACGCGTGCAAGTAGTGGTAGGCCCCCCCAAACTGGCCTGCTGGGGTTGTTGACCGTAACAGGCAAAACAGCGAAAGAGAGCAAAGGAACCACATCAATGCATAGTGAGGATGATCTAATTGCTCGAGCACACAACCACCATCAGCAGCAGCAAACGACACAGCAGATCACGACCATCACGAAGGTCGTGCGGGAGGTGAAGCAGTTGGGACCGGATGCTGGACAACCGTTCGACTATGTAGCAATGCCTCTAGACATGGGAACCGACGGTCAACCGATCGACTACGTGTCGATGCCGATGGGTATGTACACGACCCGGACGCAGTACTTGAACTTCAACCACATGGACCAGCCGGAGCAGATGGTGGGTGGGGG]


>consensus_8790#1 CCGCCCACGCGTCCGGCAAGAGAGATTGCGGCGTGCGGTGTGTGAACTGGTGAAGAGCGG TCCAGTAAAGCGGGCAAAAGAGAGAAAGAAGAATCCGCAGTACGTGTGACAGAGAGTCGC CGAAGCAGACGTGCGTGTGTGTGTGTGGTTTTGTGATTTGCTAGAGTGAGAAAGGAGGAA AGCAGAGCTGGAACCGTGAGCTGTGGTGGTGCGGTGTGACAACGAAGCATGCCGATGCGT GGCTGAGTGGATGCATGTGTGTAGGTGTGTGAATGCAACAGCACAAACAAGACGGGCGCC GCTAGTGTGTGAGTGTGTATCCTTGGTGAACCAGTAGGGAACGCGTGCAAGTAGTGGTAG GCCCCCCCAAACTGGCCTGCTGGGGTTGTTGACCGTAACAGGCAAAACAGCGAAAGAGAG CAAAGGAACCACATCAATGCATAGTGAGGATGATCTAATTGCTCGAGCACACAACCACCA TCAGCAGCAGCAAACGACACAGCAGATCACGACCATCACGAAGGTCGTGCGGGAGGTGAA GCAGTTGGGACCGGATGCTGGACAACCGTTCGACTATGTAGCAATGCCTCTAGACATGGG AACCGACGGTCAACCGATCGACTACGTGTCGATGCCGATGGGTATGTACACGACCCGGAC GCAGTACTTGAACTTCAACCACATGGACCAGCCGGAGCAGATGGTGGGTGGGGG



consensusID : consensus_8790#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 609
fasta sequence
                              [CTGTGCCTGGGTAGTTTGGTTTGTTTCCCGGGGTGCAAATAGTCCCTCCTCGGAGTGTGGTCTACGACGATCTTCCTTAAAAACGGCGTGTATGGGTGTGTGTGAGTGTGTTGTATATATTGTTGTCAATTTAATTTAACTAGCACGCGTCTCAATACATGAGCGTGTGGCGACGCAAATTTAACTGTATATAATTTACGAGCTTTTTGTTTAAACACATTTTCTGAAAACTAAAAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCACACACACACACACACACCCCGCAAACAACACATCCTTGAGCCAACGCAGCAAGCATCCTCTTTCTCAGCGAATCAGCTCATCAAAAACTTAATTTTTCCTTTCCGCTCATACTTACACACACTCACACACTAGCGGCGCCCGTCTTGTTTGTGCTGTTGCATTCACACACCTACACACATGCATCCACTCAGCCACGCATCGGCATGCTTCGTTGTCACACCGCACCACCACAGCTTACGAGCTTTTTGTTTAAACACATTTTCTGAAAACTAAAAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGTGCGCCCGGC]

[-] EMBL BX608058             [CTGTGCCTGGGTAGTTTGGTTTGTTTCCCGGGGTGCAAATAGTCCCTCCTCGGAGTGTGGTCTACGACGATCTTCCTTAAAAACGGCGTGTATGGGTGTGTGTGAGTGTGTTGTATATATTGTTGTCAATTTAATTTAACTAGCACGCGTCTCAATACATGAGCGTGTGGCGACGCAAATTTAACTGTATATAATTTACGAGCTTTTTGTTTAAACACATTTTCTGAAAACTAAAAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCACACACACACACACACACCCCGCAAACAACACATCCTTGAGCCAACGCAGCAAGCATCCTCTTTCTCAGCGAATCAGCTCATCAAAAACTTAATTTTTCCTTTCCGCTCATACTTACACACACTCACACACTAGCGGCGCCCGTCTTGTTTGTGCTGTTGCATTCACACACCTACACACATGCATCCACTCAGCCACGCATCGGCATGCTTCGTTGTCACACCGCACCACCACAGCTTACGAGCTTTTTGTTTAAACACATTTTCTGAAAACTAAAAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGT         ]
[-] EMBL AGA285800            [                                                                                                                                                                                                                                                                              TTTCACACACACACACACACACCCCGCAAACAACACATCCTTGAGCCAACGCAGCAAGCATCCTCTTTCTCAGCGAATCAGCTCATCAAAAACTTAATTTTTCCTTTCCGCTCATACTTACACACACTCACACACTAGCGGCGCCCGTCTTGTTTGTGCTGTTGCATTCACACACCTACACACATGCATCCACTCAGCCACGCATCGGCATGCTTCGTTGTCACACCGCACCACCACAGCTTACGAGCTTTTTGTTTAAACACATTTTCTGAAAACTAAAAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGTGCGCCCGGC]


>consensus_8790#2 CTGTGCCTGGGTAGTTTGGTTTGTTTCCCGGGGTGCAAATAGTCCCTCCTCGGAGTGTGG TCTACGACGATCTTCCTTAAAAACGGCGTGTATGGGTGTGTGTGAGTGTGTTGTATATAT TGTTGTCAATTTAATTTAACTAGCACGCGTCTCAATACATGAGCGTGTGGCGACGCAAAT TTAACTGTATATAATTTACGAGCTTTTTGTTTAAACACATTTTCTGAAAACTAAAAGTCT GACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCACACACACACACACACACCCCGCAAA CAACACATCCTTGAGCCAACGCAGCAAGCATCCTCTTTCTCAGCGAATCAGCTCATCAAA AACTTAATTTTTCCTTTCCGCTCATACTTACACACACTCACACACTAGCGGCGCCCGTCT TGTTTGTGCTGTTGCATTCACACACCTACACACATGCATCCACTCAGCCACGCATCGGCA TGCTTCGTTGTCACACCGCACCACCACAGCTTACGAGCTTTTTGTTTAAACACATTTTCT GAAAACTAAAAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGT GCGCCCGGC



consensusID : consensus_8790#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 140
fasta sequence
                              [AGTGAAACTAAAGGGACAACAATATAGACAACACACTCACACACACCCATACACGCCGTTTTCAAGGAAGAACGTCGTAGACCACACTCCGAGGAGGGACCACTGGCACCCCGGGAAACAAACCAAACTACCCAGGCACA]

[+] EMBL BX615879             [AGTGAAACTAAAGGGACAACAATATAGACAACACACTCACACACACCCATACACGCCGTTTTCAAGGAAGAACGTCGTAGACCACACTCCGAGGAGGGACCACTGGCACCCCGGGAAACAAACCAAACTACCCAGGCACA]


>consensus_8790#3 AGTGAAACTAAAGGGACAACAATATAGACAACACACTCACACACACCCATACACGCCGTT TTCAAGGAAGAACGTCGTAGACCACACTCCGAGGAGGGACCACTGGCACCCCGGGAAACA AACCAAACTACCCAGGCACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8790#0      TTTTTTTTCGTTTACACATTGTATAGAATCAATTTATTTCATTAAATTTAAAATCCCGGG 60
consensus_8790#2      ------------------------------------------------------------
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      CTACATATGGTTTTGCAGTTTCACCTATATACATGACAAACGTTACTCACACGCACCAAA 120
consensus_8790#2      ------------------------------------------------------------
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      TAACCAAATCTGTGCACTTCTTTTTGTGTCGCCCCGGACAGACACGGGGAGACGGACCGT 180
consensus_8790#2      ------------------------------------------------------------
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      CTTCCTCCTCCATCCCCTCGGCATTTTCTAGCACCGTTTGCAAACGAAGTACTTTTTTTC 240
consensus_8790#2      ------------------------------------------------------------
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      TGTCTCTGTCTTAACTAAAGGATTCTCGTGCGCGGCTCGTGGCACGTACATGTCATACAT 300
consensus_8790#2      ------------------------------------------------------------
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      GTGCGCCACAAGGCAAGCAGCAGCAGCATTTCTGCGTGGCCCGACGAAAACAACCGCCCA 360
consensus_8790#2      ------------------------------------------------------------
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      AAATGCTTTCTTTTTTTTACAACGAACAAAATGCGTATCTCGTGTTATTGTACAATCGTG 420
consensus_8790#2      ------------------------------------------------------------
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      -----------------------------CCGCCCACGCGTCCGGCAAGAGAGATTGCGG 31
                                                                                  

consensus_8790#0      AATTGATTTTGAATCAATTTTACGTTTCTGTCTTTCGTGCCAAAAACCCTCCACTGTTAG 480
consensus_8790#2      ------------------------------------------------------------
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      CGTGCGGTGTGTGAACTGGTGAAGAGCGGTCCAGTAAAGCGGGCAAAAGAGAGAAAGAAG 91
                                                                                  

consensus_8790#0      TGTGCCTGTGCCTGGGTAGTTTGGTTTGTTTCCCGGGTTGCAAATAGTCCCTTCTCAGAG 540
consensus_8790#2      -----CTGTGCCTGGGTAGTTTGGTTTGTTTCCCGGGGTGCAAATAGTCCCTCCTCGGAG 55
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      AATCCGCAGTACGTGTGACAGAGAGTCGCCGAAGCAGACGTGCGTGTGTGTGTGTGGTTT 151
                                                                                  

consensus_8790#0      TGTGGTCTACGACGATCTTCCTTAAAAACGGCGTCTATGGGTGTGTGTT------TTGTA 594
consensus_8790#2      TGTGGTCTACGACGATCTTCCTTAAAAACGGCGTGTATGGGTGTGTGTGAGTGTGTTGTA 115
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      TGTGATTTGCTAGAGTGAGAAAGGAGGAAAGCAGAGCTGGAACCGTGAGCTGTGGTGGTG 211
                                                                                  

consensus_8790#0      TATATTGTTGTCAATTTAATTTAACTAGCACGCGTCTCAATACAT---CGGGTGGCGACG 651
consensus_8790#2      TATATTGTTGTCAATTTAATTTAACTAGCACGCGTCTCAATACATGAGCGTGTGGCGACG 175
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      CGGTGTGACAACGAAGCATGCCGATGCGTGGCTGAGTGGATGCATG--TGTGTAGGTGTG 269
                                                                                  

consensus_8790#0      CAATTTTAACTGTATATAATTTACGAGCTTTTTGTTTAAACACATTTTCTGCAAAACTAA 711
consensus_8790#2      CAAATTTAACTGTATATAATTTACGAGCTTTTTGTTTAAACACATTTTCTG-AAAACTAA 234
consensus_8790#3      -------------------------------------------------AGTGAAACTAA 11
consensus_8790#1      TGAATGCAACAGCACAAACAAGACGGGCGCCGCTAGTGTGTGAGTGTGTATCCTTGGTGA 329
                                                                               * *

consensus_8790#0      AAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCATCACACTGGTGCGCCCGGC 771
consensus_8790#2      AAGTCTGACTCTCGCGTCTTCCTACCCGCCCACCGGTTTCA-CACACACACACACACACC 293
consensus_8790#3      AGGGACAACAATATAGACAACACACTCACACAC------------ACCCATACACGCCGT 59
consensus_8790#1      ACCAGTAGGGAACGCGTGCAAGTAGTGGTAGGCCCCCCCAAACTGGCCTGCTGGGGTTGT 389
                      *              *       *        *             *             

consensus_8790#0      G-GTGGGTGGTGCCTTTTTAAGTAAAGAAATACGTTAGGAAAAGAAGCGCTCCCGCTAAA 830
consensus_8790#2      CCGCAAACAACACATCCTTGAGCCAA------CGCAGCAAGCATCCTCTTTCTCAGCGAA 347
consensus_8790#3      TTTCAAGGAAGAACGTCGTAGACCACACTCCGAGGAGGGACCACTGGCAC-CCCGGGAAA 118
consensus_8790#1      TGACCGTAACAGGCAAAACAG-CGAAAGAGAGCAAAGGAACCACATCAATGCATAGTGAG 448
                                              *              *  *        *      * 

consensus_8790#0      CA-GGCTCCGCTTCAAACGCGTTGTTAAATATATAGAAGTGGCAATGTAGCTGCTTGGCT 889
consensus_8790#2      TC-AGCT---CATCAAAAACTTAATTTTTCCTTTCCGCTCATACTTACACACACTCACAC 403
consensus_8790#3      CA-AACCAAACTACCCAGGCACA------------------------------------- 140
consensus_8790#1      GATGATCTAATTGCTCGAGCACACAACCACCATCAGCAGCAGCAAACGACACAGCAGATC 508
                                   *     *                                        

consensus_8790#0      AAACTTTTCGCCTTCCTTTCCTTGCCCGATTCCGTTCCTCTCTCTCCACATCCGAACGCC 949
consensus_8790#2      ACTAGCGGCGCCCGTCTTGT-TTGTGCTGTTGCATTCACACACCTACACA--CATGCATC 460
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      ACGACCATCACGAAGGTCGT-GCGGGAGGTGAAGCAGTTGGGACCGGATGCTGGACAACC 567
                                                                                  

consensus_8790#0      GAATCTTGAAAGTGCACAATATTATGTTTCTATGCTATTTTTCACCTCAACCCAACTCAC 1009
consensus_8790#2      CACTC----AGCCACGCATCGGCATGCTTCGTTGTCACACCGCACCACCA--CAGCTTAC 514
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      GTTCG-----ACTATGTAGCAATGCCTCTAGACATGGGAACCGACGGTCAACCGATCGAC 622
                                                                                  

consensus_8790#0      TAACGGTTTAGCACCACTGACGTGTAAGTA-ATTGTCTGCTGTAACTGGGTGTTTGACAT 1068
consensus_8790#2      GAGCTTTTT------------GTTTAAACACATTTTCTG--AAAACTAAAAGTCTGACTC 560
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      TACGTGTCGATGCCGATGGGTATGTACACGACCCGGACGCAGTACTTGAACTTCAACCAC 682
                                                                                  

consensus_8790#0      TTTTG-CTTACAATATATAAGTAGATTTTCTGCTCGCACTTTCTCCCCTCATCCATCGTG 1127
consensus_8790#2      TCGCGTCTTCCTACCCGCCCACCGGTTTCAT---CACACTGGTGCGCCCGGC-------- 609
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      ATGGACCAGCCGGAGCAGATGGTGGGTGGGGG---------------------------- 714
                                                                                  

consensus_8790#0      TGTCTGCACTAAAACTGGCTGAGTGTGGAGTACGGACCCCTAATCCTTCCTGTACCTTAA 1187
consensus_8790#2      ------------------------------------------------------------
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      ATTTCATTTGGTATATTGCCGTGCGATCTTTTAGATCACATTTTCAGTAGCGTGCACAGG 1247
consensus_8790#2      ------------------------------------------------------------
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      GGCATCTCATCATCATTGCGCCTAATTTCCATCGTTCCGCACATTCATTGCACCTGTGAG 1307
consensus_8790#2      ------------------------------------------------------------
consensus_8790#3      ------------------------------------------------------------
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      AATAGTGTGCGG 1319
consensus_8790#2      ------------
consensus_8790#3      ------------
consensus_8790#1      ------------
                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)