These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 659 fasta sequence [CCGACGAGGTGTTGTTGGTCGATCGGTGTTGGGAGAAAATCCGCATCTCGATTCA-GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAGCCACGAATTGGTCGCGTCCTGTTGTGCATCCTCAACAGGGCGGAAGGGTGTGCGTCCTCGATGAAACACCGAAAGTGTGAAACATGCAAAGGAAATGTGCAGATGGATTGTTGAAATTATAAAAAGAACACAACTGT] [+] EMBL BM622934 [CCGACGAGGTGTTGTTGGTCGATCGGTGTTGGGAGAAAATCCGCATCTCGATTCA GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCTCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTG ] [+] EMBL BX618937 [caaACGAGGTGTTGTTGGTCGATCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTTACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAACCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAA ] [+] EMBL BM590115 [ ccgGATCGGTGTTGGGAGAAAATCCGCTTCTC ACGCA GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTA ] [+] EMBL BM621501 [ ccGGAGAAAATCCGCATCTCGATTCA GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCTCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTGGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAGCCACGAATTGGTCGCGTCCTGTTGTGCATCCTCAACAGGGCGGAAGGGTGTGCGTCCTCGATGAAACACCGAAAGTGTGAAACATGCAAAGGAAATGTGCAGATGGATTGTTGAAATTATAAAAAGAACACAACTGT] [+] EMBL BM628415 [ ccgTCCGCTTCTC ACGCA GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTT ] [+] EMBL BM646772 [ ccgCCGCTTCTC ACGCA GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGG ] [+] EMBL BM584495 [ ccgAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAGCCACG ] [+] EMBL BM591082 [ ccGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGATAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCC ] consensusID : consensus_8857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 600 fasta sequence [CCGCGGACGCGTGGGCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTTACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCAAATTTTGCGG] [+] EMBL BM591787 [CCGCGGACGCGTGGGCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTTACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTGGATGTAAATAAAAAAAGCCCAAAAATCACTACCC ] [+] EMBL BM630657 [ ccGAGAAAATCCGCATCTCGATTCAGGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTTACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTA ] [+] EMBL BM653988 [ ccgGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCC ] [+] EMBL CNS0970G [ CCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCAAATTTTGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8857#0 CCGACGAGGTGTTGTTGGTCGATCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGA 60 consensus_8857#1 --------CCGCGGACGCGTGGGCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGA 52 * * * * ************************************* consensus_8857#0 AAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAA 120 consensus_8857#1 AAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTTACGAAA 112 ***************************************************** ****** consensus_8857#0 TCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCT 180 consensus_8857#1 TCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCT 172 ************************************************************ consensus_8857#0 TGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCA 240 consensus_8857#1 TGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCA 232 ************************************************************ consensus_8857#0 GCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTT 300 consensus_8857#1 GCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTT 292 ************************************************************ consensus_8857#0 GCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACC 360 consensus_8857#1 GCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACC 352 ************************************************************ consensus_8857#0 CCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTAC 420 consensus_8857#1 CCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTAC 412 ************************************************************ consensus_8857#0 TTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAG 480 consensus_8857#1 TTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAG 472 ************************************************************ consensus_8857#0 CGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAGCCACGAATTGGTCGCGTC 540 consensus_8857#1 CGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAAAAAAAAAA---------- 522 ***************************************** * ** consensus_8857#0 CTGTTGTGCATCCTCAACAGGGCGGAAGGGTGTGCGTCCTCGATGAAACACCGAAAGTGT 600 consensus_8857#1 ---------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 567 ** * ** * *** * *** consensus_8857#0 GAAACATGCAAAGGAAATGTGCAGATGGATTGTTGAAATTATAAAAAGAACACAACTGT 659 consensus_8857#1 AAAAAAAAAAAAAAAAAAAGGCAAATT--TTGCGG------------------------ 600 *** * *** *** *** ** *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||