Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8916 cluster # 8916       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8916#0 length = 1781 sequences # 10  
consensus_8916#1 length = 644 sequences # 1  
consensus_8916#2 length = 569 sequences # 1  
consensus_8916#3 length = 486 sequences # 1  

consensusID : consensus_8916#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1781
fasta sequence
                              [GCCGAGTACTACAAGGATCTTGAGTTCCAGCCGGACAGTACCTATCTGAACACGATCCTGTACATGAACAAGTTCGGCACGACGAAAGCGTTCAAGAAGCTGCGCATTGCGGTCAACAAAACCGACTGGATCACCCACTCCAGACCGGCGATCGTGAACGCTTTCTACTCGTCGATCGAGAACAGCATTCGTAAGTAGTGGGACAAGAGTAAAAAGGACCCACCGAACCGGGCCACTAATCGTAATCTCTCACTCTCTCATTTTTTTGTACAGAGTTCCCGGCCGGTATTCTGCAGGGCCAGTTCTTCTCGTACGATCGCCCGAAGTACATGAACTACGGTGCGATTGGGTTCGTCATCGGGCACGAGATCACGCACGGCTTCGACGACCAGGGCCGCCAGTTCGACAAGAACGGCAATCTCGTCGACTGGTGGCAGTCGGACACCAAGACGGCCTACCTCGAGAAGGCTCGCTGCATCATCGAACAGTACGGCAACTACACCGAGCCGAACGTGAAGCTCAACCTGAACGGTATCAACACGCAGGGCGAAAACATTGCCGACAACGGGGGCATCAAGGAGGCGTACTACGCGTACCGCAGGTGGACCGAAAAGAATGGCCCGGAACAGCGCCTGCCCGGGCTGAACCTAAGCCCCGAGCAGATGTTCTGGCTGTCGGCCGCCCAAACCTGGTGCTCGGTCTACCGTCCGGAGACGATGAAGATGCGCA-TTACCACGGGCGTGCACTCGCCCGGCCAGTTCCGCGTGCTCGGCCCGATGAGCAACATGCACGAGTTTGCGAAGGACTTTAACTGCCCGGTCGGCTCGCCGATGAACCCGGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACGCTCATGGCAAAATGGGACCGGCCACGACGACAGCGTTCGATACGGGCCGGTTCCACGTGGTGCAAAAGGAACCCGAGCAACAGCAGCCGCGGACAACAGTGCGGATAACAAACACGCACCACCTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGTTTTGCGCTAACTCCTGCAGCAGCAGCAACAGCACACGAACACACGTTCTTAGGTGAACGAATGCGACTTACAGAAGAAGAAGGAAAACAAAACCCGCAACAGTGACACATCCCAATTGTTTCGGGGCGTCTCACGTCGGACTTTCTATTACATATACCTACAATCTCTTCTA--TTTTTTTGTTGTTGCAAGAGAAGAACACTATCTACGACCGTTTTTAGCAAGGGTTTGGGCCCAGATGAGCTTAACATTATTCATAGACAATGGGGTTTACATCGAGTTTACATACGTAGGTGTAAATGGCGGCAAGCAAAGCAAAAATCATGCATGCACACGGGCCCCGGTGAGCGCCGTGTAGCGCGGAACCGTTACAAATTAATTTAAATTCTCCTCCCTTCGAATTCGCCACATTCTGTGTCGCAAATAGGGGACGACAAAACAAATCGAACAACAGGTATT-GTTATCAGTAAGCGTATTTT--TTTTGGTTT--TGT-TTGGTCGAAATCATCCGGGCGGC----AGGGGGGTGGTTGCTTGCG---GAGGTGGG-ATTGGGATGGATACCGGCATCCCTGCGATCGAGTCCTTAAACGTTTC-TTCTCTTTGCTATTTTTAAGTAGATGATATACAAAACTATTAAGAAAGATTCTCATGCAGAGTGAACCGTGGGTTCTTTCATTTTATCAACATACAAATATTGCTTTATGATATTACTGTGTCATAAATACAAATAAACAAATGTTTTT]

[+] EMBL BX621482             [GCCGAGTACTACAAGGATCTTGAGTTCCAGCCGGACAGTACCTATCTGAACACGATCCTGTACATGAACAAGTTCGGCACGACGAAAGCGTTCAAGAAGCTGCGCATTGCGGTCAACAAAACCGACTGGATCACCCACTCCAGACCGGCGATCGTGAACGCTTTCTACTCGTCGATCGAGAACAGCATTCGTAAGTAGTGGGACAAGAGTAAAAAGGACCCACCGAACCGGGCCACTAATCGTAATCTCTCACTCTCTCATTTTTTTGTACAGAGTTCCCGGCCGGTATTCTGCAGGGCCAGTTCTTCTCGTACGATCGCCCGAAGTACATGAACTACGGTGCGATTGGGTTCGTCATCGGGCACGAGATCACGCACGGCTTCGACGACCAGGGCCGCCAGTTCGACAAGAACGGCAATCTCGTCGACTGGTGGCAGTCGGACACCAAGACGGCCTACCTCGAGAAGGCTCGCTGCATCATCGAACAGTACGGCAACTACACCGAGCCGAACGTGAAGCTCAACCTGAACGGTATCAACACGCAGGGCGAAAACATTGCCGACAACGGGGGCATCAAGGAGGCGTACTACGCGTACCGCAGGTGGACCGAAAAGAATGGCCCGGAACAGCGCCTGCCCGGGCTGAACCTAAGCCCCGAGCAGATGTTCTGGCTGTCGGCCGCCCAAACCTGGTGCTCGGTCTACCGTCCGGAGACGATGAAGATGCGCATTTACCACGGGCGTGCACTCGCCCGGNCAGTTCCGCGTGCTCGGGCCGATGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX602177             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCTACCTCGAGAAGGCTCGCTGCATCATCGAACAGTACGGCAACTACACCGAGCCGAACGTGAAGCTCAACCTGAACGGTATCAACACGCAGGGCGAAAACATTGCCGACAACGGGGGCATCAAGGAGGCGTACTACGCGTACCGCAGGTGGACCGAAAAGAATGGCCCGGAACAGCGCCTGCCCGGGCTGAACCTAAGCCCCGAGCAGATGTTCTGGCTGTCGGCCGCCCAAACCTGGTGCTCGGTCTACCGTCCGGAGACGATGAAGATGCGCA TTACCACGGGCGTCCACTCGCCCGGCCAGTTCCGCGTGCTCGGCCCGATGAGCAACATGCACGAGTTTGCGAAAGACTTTAACTGCCCGGTCGGTTCGCCGATGAATCCGGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACGCTCATGGCAAAATGGGACCGGCTACGACGACAGCGTTCGATGCGGGCCGGTTCCACGTGGTGCAAAAGGAACCCGAGCAACAGCAGCCGCGGACAACAGTGCGGACAACAAACACGCACCACCTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGTTTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX616207             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTCGCTGCATCATCGAACAGTACGGCAACTACACCGAGCCGAACGTGAAGCTCAACCTGAACGGTATCAACACGCAGGGCGAAAACATTGCCGACAACGGGGGCATCAAGGAGGCGTACTACGCGTACCGCAGGTGGACCGAAAAGAATGGCCCGGAACAGCGCCTGCCCGGGCTGAACCTAAGCCCCGAGCAGATGTTCTGGCTGTCGGCCGCCCAAACCTGGTGCTCGGTCTACCGTCCGGAGACGATGAAGATGCGCA TTACCACGGGCGTGCACTCGCCCGGCCAGTTCCGCGTGCTCGGCCCGATGAGCAACATGGACGAGTTTGCGAAGGACTTTAACTGCCCGGTCGGCTCGCCGATGAACCCGGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACGCTCATGGCAAAATGGGACCGGCCACGACGACAGCGTTCGATACGGGCCGGTTCCACGTGGTGCAAAAGGAACCCGAGCAACAGCAGCCGCGGACAACAGTGCGGATAACAAACACGCACCACCTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGTTTTGCGCTAACTCCTGCAGCAGCAGCAACAGCACACGAACACACGTTCTTAGGTGAACGAATGCGACTTACAGAAGAAGAAGGAAAACATAACCCGCAACAGTGACACATCCCAATTGTTTCGGGGCGTCTCACGTCGGACTTTCTATTACATATACCTACAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX625830             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGCCGAACGTGAAGCTCAACCTGAACGGTATCAACACGCAGGGCGAAAACATTGCCGACAACGGGGGCATCAAGGAGGCGTACTACGCGTACCGCAGGTGGACCGAAAAGAATGGCCCGGAACAGCGCCTGCCCGGGCTGAACCTAAGCCCCGAGCAGATGTTCTGGCTGTCGGCCGCCCAAACCTGGTGCTCGGTCTACCGTCCGGAGACGATGAAGATGCGCA TTACCACGGGCGTGCACTCGCCCGGCCAGTTCCGCGTGCTCGGCCCGATGAGCAACATGCACGAGTTTGCGAAGGACTTTAACTGCCCGGTCGGCTCGCCGATGAACCCGGAGCACAAGTGCGAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM576005             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ccgCCGGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACGCTCATGGCAAAATGGGACTGGCCACGACGACAGCGTTCGATACGGGCCGGTTCCACGTGGTGCAAAAGGAACCCGAGCAACAGCAGCCGCGGACAACAGTGCGGACAACAAACACGCACCACCTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGTTTTGCGCTAACTCCTGCAGCAGCAGCAACAGCACACGAACACACGTTCTTAGGTGAACGAATGCGACTTACAGAAGAAGAAGGAAAACAAAACCCGCAACAGTGACACATCCCAATTGTTTCGGGGCGTCTCACGTCGGGCTTTCTATTACATATACCTACAATCTCTTCTATTTTTTTTTGTTGTTGCAAGAGAAGAACACTATCTACGACCGTTTTTAGCAAGGGTTTGGGCCCAGATGAGCTTAACATTATTCATAGACGGTGGGGTTTACATCGAGTTTACATACGTAGGTGTAAATGGCGGCAAGCAAAGCTAAAATCATGCATGCACACGGGCCCCGGTGAGCGCCGTGTAACGCGGAACCGTTACAAATTAATTTAAATTTTCCTCCCTTTGAATTCGCCACATTCTGTGTCGCAAATAGGGGACGACAAAACAAATCG                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM617364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ccgGAGAGCGAACGCAACGACAAACGCTCATGGCAAAATGGGACCGGCCACGACGACAGCGTTCGATACGGGCCGGTTCCACGTGGTGCAAAAGGAACCCGAGCAACAGCAGCCGCGGACAACAGTGCGGATAACAAACACGCACCACCTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGTTTTGCGCTAACTCCTGCAGCAGCAGCAACAGCACACGAACACACGTTCTTAGGTGAACGAATGCGACTTACAGAAGAAGAAGGAAAACAAAACCCGCAACAGTGACACATCCCAATTGTTTCGGGGCGTCTCACGTCGGACTTTCTATTACATATACCTACAATCTCTTCTA  TTTTTTTGTTGTTGCAAGAGAAGAACACTATCTACGACCGTTTTTAGCAAGGGTTTGGGCCCAGATGAGCTTAACATTATTCATAGACAATGGGGTTTACATCGAGTTTACATACGTAGGTGTAAATGGCGGCAAGCAAAGCAAAAATCATGCATGCACACGGGCCCCGGTGAGCGCCGTGTAGCGCGGAACCGTTACAAATTAATTTAAATTCTCCTCCCTTCGAATTCGCCACATTCTGTGTCGCAAATAGGGGACGACAAAA                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM617357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ccgGAGAGCGAACGCAACGACAAACGCTCATGGCTAAATGGGACCGGCCACGACGACAGCGTTCGATACGGGCCGGTTCCACGTGGTGCAAAAGGAACCCGAGCAACAGCAGCCGCGGACAACAGTGCGGATAACTAACACGCACCACCTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGTTTTGCGCTAACTCCTGCAGCAGCAGCAACAGCACACGAACACACGTTCTTAGGTGAACGAATGCGACTTACAGAAGAAGAAGGAAAACAAAACCCGCAACAGTGACACTTCCCAATTGTTTCGGGGCGTCTCACGTCGGACTTTCTATTACATATACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AL693184             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 caggattaGCA CA CTTACTCGGATTCNTTACTT ATTTATTTAGTCCGCTGTTTTGCGCTAACTCCTGCAGCAGCAGCAACAGCACACGAACACACGTTCTTAGGTGAACGAATGCGACTTACAGAAGAAGAAGGAAAACAAAACCCGCAACAGTGACACATCCCAATTGTTTCGGGGCGTCTCACGTCGGACTTTCTATTACATATACCTACAATCTCTTCTA    TTTTTGTTGTTGCAAGAGAAGAACACTATCTACGACCG  TTTAGCAAGGGTTTGGGCCCAGATGAGCTTAACATTATTCATAGACAATGGGGTTTACATCGAGTTTACATACGTAGGTGTAAATGGCGGCAAGCAAAGCAAAAATCATGCATGCACACGGGCCCCGGTGAGCGCCGTGTAGCGCGGAACCGTTACAAATTAATTTAAATTCTCCTCCCTTCGAATTCGCCACATTCTGTGTCGCAAATAGGGGACGACAAAACAAATCGAACAACAGGTATT GTTATCAGTAAGCGTATTCTCAAAAAGGTATAAAGTNAGGGTCGAAATCATCCGGGCGGCCACNAGGGGCGTGGTTGCTTGCGAGAGAGCTGGGCATTGGGATGGATACCGGCATCCCTGGGATCaganntc                                                                                                                                                                ]
[+] EMBL BX615227             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGCGTCTCACGTCGGACTTTCTATTACATATACCTACAATCTCTTCTA  TTTTTTTGTTGTTGCAAGAGAAGAACACTATCTACGACCGTTTTTAGCAAGGGTTTGGGCCCAGATGAGCTTAACATTATTCATAGACAATGGGGTTTACATCGAGTTTACATACGTAGGTGTAAATGGCGGCAAGCAAAGCAAAAATCATGCATGCACACGGGCCCCGGTGAGCGCCGTGTAGCGCGGAACCGTTACAAATTAATTTAAATTCTCCTCCCTTCGAATTCGCCACATTCTGTGTCGCAAATAGGGGACGACAAAACAAATCGAACAACAGGTATT GTTATCAGTAAGCGTATTTT  TTTTGGTTT  TGT TTGGTCGAAATCATCCGGGCGGC    AGGGGGGTGGTTGCTTGCG   GAGGTGGG ATTGGGATGGATACCGGCATCCCTGCGATCGAGTCCTTAAACGTTTC TTCTCTTTGCTATTTTTAAGTAGATGATATACAAAACTATTAAGAAAGATTCTCATGCAGAGTGAACCGTGGGTTCTTTCATTTTATCAACATACAAATATTGCTTTA                                         ]
[+] EMBL BX612172             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAGTTTACATACGTAGGTGTAAATGGCGGCAAGCAAAGCAAAAATCATGCATGCACACGGGCCCCGGTGAGCGCCGTGTAGCGCGGAACCGTTACAAATTAATTTAAATTCTCCTCCCTTCGAATTCGCCACATTCTGTGTCGCAAATAGTGGACGACAAAACAAATCGAACAACAGGTATTGGTTATCAGTAAGCGTATTTT  TTTTGGTTT  TGT TTGGTCGAAATCATCCGGGCGGC    AGGGGGGTGGTTGCTTGCG   GAGGTGGG ATTGGGATGGATACCGGCATCCCTGCGATCGAGTCCTTAAACGTTTCTTTCTCTTTGCTATTTTTAAGTAGATGATATACAAAACTATTAAGAAAGATTCTCATGCAGAGTGAACCGTGGGTTCTTTCATTTTATCAACATACAAATATTGCTTTATGATATTACTGTGTCATAAATACAAATAAACAAATGTTTTT]


>consensus_8916#0 GCCGAGTACTACAAGGATCTTGAGTTCCAGCCGGACAGTACCTATCTGAACACGATCCTG TACATGAACAAGTTCGGCACGACGAAAGCGTTCAAGAAGCTGCGCATTGCGGTCAACAAA ACCGACTGGATCACCCACTCCAGACCGGCGATCGTGAACGCTTTCTACTCGTCGATCGAG AACAGCATTCGTAAGTAGTGGGACAAGAGTAAAAAGGACCCACCGAACCGGGCCACTAAT CGTAATCTCTCACTCTCTCATTTTTTTGTACAGAGTTCCCGGCCGGTATTCTGCAGGGCC AGTTCTTCTCGTACGATCGCCCGAAGTACATGAACTACGGTGCGATTGGGTTCGTCATCG GGCACGAGATCACGCACGGCTTCGACGACCAGGGCCGCCAGTTCGACAAGAACGGCAATC TCGTCGACTGGTGGCAGTCGGACACCAAGACGGCCTACCTCGAGAAGGCTCGCTGCATCA TCGAACAGTACGGCAACTACACCGAGCCGAACGTGAAGCTCAACCTGAACGGTATCAACA CGCAGGGCGAAAACATTGCCGACAACGGGGGCATCAAGGAGGCGTACTACGCGTACCGCA GGTGGACCGAAAAGAATGGCCCGGAACAGCGCCTGCCCGGGCTGAACCTAAGCCCCGAGC AGATGTTCTGGCTGTCGGCCGCCCAAACCTGGTGCTCGGTCTACCGTCCGGAGACGATGA AGATGCGCATTACCACGGGCGTGCACTCGCCCGGCCAGTTCCGCGTGCTCGGCCCGATGA GCAACATGCACGAGTTTGCGAAGGACTTTAACTGCCCGGTCGGCTCGCCGATGAACCCGG AGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACGCTCATGGCAAAATGG GACCGGCCACGACGACAGCGTTCGATACGGGCCGGTTCCACGTGGTGCAAAAGGAACCCG AGCAACAGCAGCCGCGGACAACAGTGCGGATAACAAACACGCACCACCTTACTCGGATTC GTTACTTAATTTATTTAGTCCGCTGTTTTGCGCTAACTCCTGCAGCAGCAGCAACAGCAC ACGAACACACGTTCTTAGGTGAACGAATGCGACTTACAGAAGAAGAAGGAAAACAAAACC CGCAACAGTGACACATCCCAATTGTTTCGGGGCGTCTCACGTCGGACTTTCTATTACATA TACCTACAATCTCTTCTATTTTTTTGTTGTTGCAAGAGAAGAACACTATCTACGACCGTT TTTAGCAAGGGTTTGGGCCCAGATGAGCTTAACATTATTCATAGACAATGGGGTTTACAT CGAGTTTACATACGTAGGTGTAAATGGCGGCAAGCAAAGCAAAAATCATGCATGCACACG GGCCCCGGTGAGCGCCGTGTAGCGCGGAACCGTTACAAATTAATTTAAATTCTCCTCCCT TCGAATTCGCCACATTCTGTGTCGCAAATAGGGGACGACAAAACAAATCGAACAACAGGT ATTGTTATCAGTAAGCGTATTTTTTTTGGTTTTGTTTGGTCGAAATCATCCGGGCGGCAG GGGGGTGGTTGCTTGCGGAGGTGGGATTGGGATGGATACCGGCATCCCTGCGATCGAGTC CTTAAACGTTTCTTCTCTTTGCTATTTTTAAGTAGATGATATACAAAACTATTAAGAAAG ATTCTCATGCAGAGTGAACCGTGGGTTCTTTCATTTTATCAACATACAAATATTGCTTTA TGATATTACTGTGTCATAAATACAAATAAACAAATGTTTTT



consensusID : consensus_8916#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence
                              [CTCAGGCAAGAATCCCCGAGGTTAACATGCACGAGTTTGCGAAGTGACTTTAACTGCCCGGTCGGCTCGCCGATGAACCCGGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACNGCTCATNTGCAAAATGGNGACCGGCACGACGACAGCTGTTCTGATACGGGCCTGGTTCCACGTGTGTGCAAAATGGAACCCTGAGCAACAGCAGCCTGCTGGACAACAGTGCTGGATAACAAACANGCACAACTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGGTTATTGCGCTAACTCCTGCAGCAGCAGCAACAGGACACGAACACACGTTCTTAGGTGAACGAATGCGACTTACATGAAGAACGAAGGGAAAACCAAAACCGGAACCAGGTGACACATCCAATTGGTTTCGGGGCGTCTCACGTCGGACTTTCTATTAACAGTATACCTACAATCTCTTCTATAACAGCATGTCGCAAGAGAAGGAACACTATCTACGAACCGGTCATNTAAGACCAACGNGCGTANTGGGGCCCCGATGAGCCTTAAACATTTATTTCCATAANAACANACTGGGGGGTTTTNACAATCGCAGTTTACATAACGNGTAANAGTNGTAACATTGGCG]

[+] EMBL AL697367             [CTCAGGCAAGAATCCCCGAGGTTAACATGCACGAGTTTGCGAAGTGACTTTAACTGCCCGGTCGGCTCGCCGATGAACCCGGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACNGCTCATNTGCAAAATGGNGACCGGCACGACGACAGCTGTTCTGATACGGGCCTGGTTCCACGTGTGTGCAAAATGGAACCCTGAGCAACAGCAGCCTGCTGGACAACAGTGCTGGATAACAAACANGCACAACTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGGTTATTGCGCTAACTCCTGCAGCAGCAGCAACAGGACACGAACACACGTTCTTAGGTGAACGAATGCGACTTACATGAAGAACGAAGGGAAAACCAAAACCGGAACCAGGTGACACATCCAATTGGTTTCGGGGCGTCTCACGTCGGACTTTCTATTAACAGTATACCTACAATCTCTTCTATAACAGCATGTCGCAAGAGAAGGAACACTATCTACGAACCGGTCATNTAAGACCAACGNGCGTANTGGGGCCCCGATGAGCCTTAAACATTTATTTCCATAANAACANACTGGGGGGTTTTNACAATCGCAGTTTACATAACGNGTAANAGTNGTAACATTGGCG]


>consensus_8916#1 CTCAGGCAAGAATCCCCGAGGTTAACATGCACGAGTTTGCGAAGTGACTTTAACTGCCCG GTCGGCTCGCCGATGAACCCGGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACG ACAAACNGCTCATNTGCAAAATGGNGACCGGCACGACGACAGCTGTTCTGATACGGGCCT GGTTCCACGTGTGTGCAAAATGGAACCCTGAGCAACAGCAGCCTGCTGGACAACAGTGCT GGATAACAAACANGCACAACTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGGTT ATTGCGCTAACTCCTGCAGCAGCAGCAACAGGACACGAACACACGTTCTTAGGTGAACGA ATGCGACTTACATGAAGAACGAAGGGAAAACCAAAACCGGAACCAGGTGACACATCCAAT TGGTTTCGGGGCGTCTCACGTCGGACTTTCTATTAACAGTATACCTACAATCTCTTCTAT AACAGCATGTCGCAAGAGAAGGAACACTATCTACGAACCGGTCATNTAAGACCAACGNGC GTANTGGGGCCCCGATGAGCCTTAAACATTTATTTCCATAANAACANACTGGGGGGTTTT NACAATCGCAGTTTACATAACGNGTAANAGTNGTAACATTGGCG



consensusID : consensus_8916#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence
                              [CGAGAACAGCATTCAGTTCCCGGCCGGTATTCTGCAGGGCCAGTTCTTCTCGTACGATCGCCCGAAGTACATGAACTACGGTGCGATTGGGTTCGTCATCGGGCACGAGATCACGCACGGCTTCGACGACCAGGGCCGCCAGTTCGACAAGAACGGCAATCTCGTCGACTGGTGGCAGTCGGACACCAAGACGGCCTACCTCGAGAAGGCTCGCTGCATCATCGAACAGTACGGCAACTACACCGAGCCGAACGTGAAGCTCAACCTGAACGGTATCAACACGCAGGGCGAAAACATTGCCGACAACGGGGGCATCAAGGAGGCGTACTACGCGTACCGCAGGTGGACCGAAAAGAATGGCCCGGAACAGCGCCTGCCCGGGCTGAACCTAAGCCCCGAGCAGATGTTCTGGCTGTCGGCCGCCCAAACCTGGTGCTCGGTCTACCGTCCGGAGACGATGAAGATGCGCATTACCACGGGCGTGCACTCGCCCGGNCAGTTCCGCGTGCTCGGCCCGATGAGCAACATGCACGAGTTTGCGAAGGACTTTAACTGCCCGGTCGGCTCGC]

[+] EMBL BX620310             [CGAGAACAGCATTCAGTTCCCGGCCGGTATTCTGCAGGGCCAGTTCTTCTCGTACGATCGCCCGAAGTACATGAACTACGGTGCGATTGGGTTCGTCATCGGGCACGAGATCACGCACGGCTTCGACGACCAGGGCCGCCAGTTCGACAAGAACGGCAATCTCGTCGACTGGTGGCAGTCGGACACCAAGACGGCCTACCTCGAGAAGGCTCGCTGCATCATCGAACAGTACGGCAACTACACCGAGCCGAACGTGAAGCTCAACCTGAACGGTATCAACACGCAGGGCGAAAACATTGCCGACAACGGGGGCATCAAGGAGGCGTACTACGCGTACCGCAGGTGGACCGAAAAGAATGGCCCGGAACAGCGCCTGCCCGGGCTGAACCTAAGCCCCGAGCAGATGTTCTGGCTGTCGGCCGCCCAAACCTGGTGCTCGGTCTACCGTCCGGAGACGATGAAGATGCGCATTACCACGGGCGTGCACTCGCCCGGNCAGTTCCGCGTGCTCGGCCCGATGAGCAACATGCACGAGTTTGCGAAGGACTTTAACTGCCCGGTCGGCTCGC]


>consensus_8916#2 CGAGAACAGCATTCAGTTCCCGGCCGGTATTCTGCAGGGCCAGTTCTTCTCGTACGATCG CCCGAAGTACATGAACTACGGTGCGATTGGGTTCGTCATCGGGCACGAGATCACGCACGG CTTCGACGACCAGGGCCGCCAGTTCGACAAGAACGGCAATCTCGTCGACTGGTGGCAGTC GGACACCAAGACGGCCTACCTCGAGAAGGCTCGCTGCATCATCGAACAGTACGGCAACTA CACCGAGCCGAACGTGAAGCTCAACCTGAACGGTATCAACACGCAGGGCGAAAACATTGC CGACAACGGGGGCATCAAGGAGGCGTACTACGCGTACCGCAGGTGGACCGAAAAGAATGG CCCGGAACAGCGCCTGCCCGGGCTGAACCTAAGCCCCGAGCAGATGTTCTGGCTGTCGGC CGCCCAAACCTGGTGCTCGGTCTACCGTCCGGAGACGATGAAGATGCGCATTACCACGGG CGTGCACTCGCCCGGNCAGTTCCGCGTGCTCGGCCCGATGAGCAACATGCACGAGTTTGC GAAGGACTTTAACTGCCCGGTCGGCTCGC



consensusID : consensus_8916#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence
                              [CAGGCAGAATTCCNGCACGATGGACGCATTACACGGGCGTCACTCGCCCGGCCAGTTCCGCGGTGCTCGGCCCGATGAGCAACATGCACGAGTTTGCGAAGGACTTTAACTGCCCGGTCGGCTCGCCGATAACCCGGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACGCTCATGGCAAAATGGGACCGGCCACGACGACAGCGTTCGATACGGGCCGGTTCCACGTGGTGCAAAAGGAACCCGAGCAACAGCAGCCGCGGACAACAGTGCGGATAACAAACACGCACCACCTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGGTTTTGCGCTAACTCCTGCAGCAGCAGCAACAGCACACGAACACACGTTCTTAGGTGAACGAATGCGACTTACAGAAGAAGAAGGAAAAGCAAGAACCCGCAACAGTGACACATCCCAATTGTTTCGGGGGCGTCTCACGTCGG]

[+] EMBL BX468486             [CAGGCAGAATTCCNGCACGATGGACGCATTACACGGGCGTCACTCGCCCGGCCAGTTCCGCGGTGCTCGGCCCGATGAGCAACATGCACGAGTTTGCGAAGGACTTTAACTGCCCGGTCGGCTCGCCGATAACCCGGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACGCTCATGGCAAAATGGGACCGGCCACGACGACAGCGTTCGATACGGGCCGGTTCCACGTGGTGCAAAAGGAACCCGAGCAACAGCAGCCGCGGACAACAGTGCGGATAACAAACACGCACCACCTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGGTTTTGCGCTAACTCCTGCAGCAGCAGCAACAGCACACGAACACACGTTCTTAGGTGAACGAATGCGACTTACAGAAGAAGAAGGAAAAGCAAGAACCCGCAACAGTGACACATCCCAATTGTTTCGGGGGCGTCTCACGTCGG]


>consensus_8916#3 CAGGCAGAATTCCNGCACGATGGACGCATTACACGGGCGTCACTCGCCCGGCCAGTTCCG CGGTGCTCGGCCCGATGAGCAACATGCACGAGTTTGCGAAGGACTTTAACTGCCCGGTCG GCTCGCCGATAACCCGGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAA CGCTCATGGCAAAATGGGACCGGCCACGACGACAGCGTTCGATACGGGCCGGTTCCACGT GGTGCAAAAGGAACCCGAGCAACAGCAGCCGCGGACAACAGTGCGGATAACAAACACGCA CCACCTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGGTTTTGCGCTAACTCCTG CAGCAGCAGCAACAGCACACGAACACACGTTCTTAGGTGAACGAATGCGACTTACAGAAG AAGAAGGAAAAGCAAGAACCCGCAACAGTGACACATCCCAATTGTTTCGGGGGCGTCTCA CGTCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      GCCGAGTACTACAAGGATCTTGAGTTCCAGCCGGACAGTACCTATCTGAACACGATCCTG 60
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      TACATGAACAAGTTCGGCACGACGAAAGCGTTCAAGAAGCTGCGCATTGCGGTCAACAAA 120
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      ACCGACTGGATCACCCACTCCAGACCGGCGATCGTGAACGCTTTCTACTCGTCGATCGAG 180
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      AACAGCATTCGTAAGTAGTGGGACAAGAGTAAAAAGGACCCACCGAACCGGGCCACTAAT 240
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      CGTAATCTCTCACTCTCTCATTTTTTTGTACAGAGTTCCCGGCCGGTATTCTGCAGGGCC 300
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      AGTTCTTCTCGTACGATCGCCCGAAGTACATGAACTACGGTGCGATTGGGTTCGTCATCG 360
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      GGCACGAGATCACGCACGGCTTCGACGACCAGGGCCGCCAGTTCGACAAGAACGGCAATC 420
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      TCGTCGACTGGTGGCAGTCGGACACCAAGACGGCCTACCTCGAGAAGGCTCGCTGCATCA 480
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      TCGAACAGTACGGCAACTACACCGAGCCGAACGTGAAGCTCAACCTGAACGGTATCAACA 540
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      CGCAGGGCGAAAACATTGCCGACAACGGGGGCATCAAGGAGGCGTACTACGCGTACCGCA 600
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      GGTGGACCGAAAAGAATGGCCCGGAACAGCGCCTGCCCGGGCTGAACCTAAGCCCCGAGC 660
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      -------------------------------------------CAGGCAGAATTCCNGCA 17
consensus_8916#0      AGATGTTCTGGCTGTCGGCCGCCCAAACCTGGTGCTCGGTCTACCGTCCGGAGACGATGA 720
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ----------------------------------------CTCAGGCAAGAATCCCCGAG 20
consensus_8916#3      CGATGGACGCATTACACGGGCGTCACTCGCCCGGCCAGTTCCGCGGTGCTCGGCCCGATG 77
consensus_8916#0      AGATGCGCATTACCACGGGCGTGCACTCGCCCGGCCAGTTCCGCG-TGCTCGGCCCGATG 779
consensus_8916#2      -----------------------------------------CGAGAACAGCATTC----A 15
                                                                  *         *     

consensus_8916#1      GTTAACATGCACGAGTTTGCGAAGTGACTTTAACTGCCCGGTCGGCTCGCCGATGAACCC 80
consensus_8916#3      AGCAACATGCACGAGTTTGCGAAG-GACTTTAACTGCCCGGTCGGCTCGCCGAT-AACCC 135
consensus_8916#0      AGCAACATGCACGAGTTTGCGAAG-GACTTTAACTGCCCGGTCGGCTCGCCGATGAACCC 838
consensus_8916#2      GTTCCCGGCCGGTATTCTGCAGGGCCAGTT---CTTCTCGTACGATCGCCCGAAGTACAT 72
                           *   *   * * ***   *  * **   ** * **  **     ****   **  

consensus_8916#1      GGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACNGCTCATNTGCAAA 140
consensus_8916#3      GGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACG-CTCATG-GCAAA 193
consensus_8916#0      GGAGCACAAGTGCGAGGTGTGGTAGAGAGCGAACGCAACGACAAACG-CTCATG-GCAAA 896
consensus_8916#2      GAACTACG-GTGCGAT-TGGGTTCGTCATCGGGCACGAGATCACGCACGGCTTCGACGAC 130
                      * *  **  ******  ** * * *  * **  * * *   **  *    * *   * * 

consensus_8916#1      -ATGGNGACCGGCACGACGACAGCTGTTCTGATACGGGCCTGGTTCCACGTGTGTGCAAA 199
consensus_8916#3      -ATGGGACCGGCCACGACGACAGC-GTTC-GATACGGGCC-GGTTCCACGTG-GTGCAAA 248
consensus_8916#0      -ATGGGACCGGCCACGACGACAGC-GTTC-GATACGGGCC-GGTTCCACGTG-GTGCAAA 951
consensus_8916#2      CAGGGCCGCCAGTTCGACAAGAACGGCAATCTCGTCGACT-GGTGGCAGTCGGACACCAA 189
                       * **   *     **** * * * *          * *  ***  **   *    * **

consensus_8916#1      ATGGAACCCTGAGCAACAGCAGCCTGCTGGACAACAGTGCTGGATAACAAACANGCACAA 259
consensus_8916#3      A-GGAACCC-GAGCAACAGCAGCCG--CGGACAACAGTGC-GGATAACAAACACGCACCA 303
consensus_8916#0      A-GGAACCC-GAGCAACAGCAGCCG--CGGACAACAGTGC-GGATAACAAACACGCACCA 1006
consensus_8916#2      G-ACGGCCTACCTCGAGAA-GGCTCGCTGCATCATCGAACAGTACGGCAACTACACCGAG 247
                            **     * * *   **     * *  *  *  * * *   ***  *  *    

consensus_8916#1      C-TTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGGTTA-TTGCGCTAACTCCTGC 317
consensus_8916#3      CCTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGGTT--TTGCGCTAACTCCTGC 361
consensus_8916#0      CCTTACTCGGATTCGTTACTTAATTTATTTAGTCCGCTGTTT---TGCGCTAACTCCTGC 1063
consensus_8916#2      CCGAACGTGAAGCTCAACCTGAACGGTATCAACACGCAGGGCGAAAACATTGCCGACAAC 307
                      *   **  * *       ** **     * *   *** *        *  *  *  *  *

consensus_8916#1      AGCAGCAGCAACAGGACACGAACACACGTTCT-TAGGTGAACGAATGCGACTTACAT-GA 375
consensus_8916#3      AGCAGCAGCAACAGCACACGAACACACGTTCT-TAGGTGAACGAATGCGACTTACA--GA 418
consensus_8916#0      AGCAGCAGCAACAGCACACGAACACACGTTCT-TAGGTGAACGAATGCGACTTACA--GA 1120
consensus_8916#2      GGGGGCATCAAGGAGGCGT-ACTACGCGTACCGCAGGTGGACCGAAAAGAATGGCCCGGA 366
                       *  *** ***     *   *  ** *** *   ***** **  *   ** *  *   **

consensus_8916#1      AGAACGAAGGGAAAACCAAAACCGGAACCAGGTG-ACACATCC-AATTGGTTTCGGGGCG 433
consensus_8916#3      AGAA-GAAGGAAAAGCAAGAACCCGCAACAG-TG-ACACATCCCAATTGTTTCGGGGGCG 475
consensus_8916#0      AGAA-GAAGGAAAA--CAAAACCCGCAACAG-TG-ACACATCCCAATTG-TTTCGGGGCG 1174
consensus_8916#2      ACAGCGCCTGCCCGGGCTGAACCTAAGCCCCGAGCAGATGTTCTGGCTGTCGGCCGCCCA 426
                      * *  *   *         ****     *    * * *  * *    **      *  * 

consensus_8916#1      --TCTCACGTCGGACTTTCTATTAACAGTATACCTACAATCTCTTCTATAACAGCAT-GT 490
consensus_8916#3      --TCTCACGTCGG----------------------------------------------- 486
consensus_8916#0      --TCTCACGTCGGACTTTCTATTA--CATATACCTACAATCTCTTCTATTTTTTTGTTGT 1230
consensus_8916#2      AACCTGGTGCTCGGTCTACCGTCCGGAGACGATGAAGATGCGCATTACCACGGGCGTGCA 486
                         **   *   *                                               

consensus_8916#1      CGCAAGAGAAGGAACACTATCTACGAACCGGTCATNTAAGACCAACGNGCGTANTGGGGC 550
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      TGCAAGAGAAG-AACACTATCTACGACCGTTTTTAGCAAGGGTTTGGGCCCAGATGAGCT 1289
consensus_8916#2      CTCGCCCGGNCAGTTCCGCGTGCTCGGCCCGATGAGCAACATGCACGAGTTTGCGAAGGA 546
                                                                                  

consensus_8916#1      CCCGATGAGCCTTAAACATTTATTTCCATAANAACANACTGGGGGGTTTTNACAATCGCA 610
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      TAACATTATTCATAGACAATGGGGTTTACATCGAGTTTACATACGTAGGTGTAAATGGCG 1349
consensus_8916#2      CTTTAACTGCCCGGTCGGCTCGC------------------------------------- 569
                                                                                  

consensus_8916#1      GTTTACATAACGNGTAANAGTNGTA-ACATTGGCG------------------------- 644
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      GCAAGCAAAGCAAAAATCATGCATGCACACGGGCCCCGGTGAGCGCCGTGTAGCGCGGAA 1409
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      CCGTTACAAATTAATTTAAATTCTCCTCCCTTCGAATTCGCCACATTCTGTGTCGCAAAT 1469
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      AGGGGACGACAAAACAAATCGAACAACAGGTATTGTTATCAGTAAGCGTATTTTTTTTGG 1529
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      TTTTGTTTGGTCGAAATCATCCGGGCGGCAGGGGGGTGGTTGCTTGCGGAGGTGGGATTG 1589
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      GGATGGATACCGGCATCCCTGCGATCGAGTCCTTAAACGTTTCTTCTCTTTGCTATTTTT 1649
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      AAGTAGATGATATACAAAACTATTAAGAAAGATTCTCATGCAGAGTGAACCGTGGGTTCT 1709
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------------------------------------------------------
consensus_8916#3      ------------------------------------------------------------
consensus_8916#0      TTCATTTTATCAACATACAAATATTGCTTTATGATATTACTGTGTCATAAATACAAATAA 1769
consensus_8916#2      ------------------------------------------------------------
                                                                                  

consensus_8916#1      ------------
consensus_8916#3      ------------
consensus_8916#0      ACAAATGTTTTT 1781
consensus_8916#2      ------------
                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)