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Anopheles gambiae
cluster # 9001 cluster # 9001       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9001#0 length = 1373 sequences # 9  
consensus_9001#1 length = 988 sequences # 2  
consensus_9001#2 length = 700 sequences # 1  
consensus_9001#3 length = 683 sequences # 1  

consensusID : consensus_9001#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1373
fasta sequence
                              [CGCCCACGGTTTATGCCATCGCCCGACAGCGTGCTGTATCAGTGCGTCATCTATCTAGACGCCGGGAGATTATCACCGCTATCCACTCGCCGACGCTATGTGAAACCTGGAACTGCGAAGGCACTTTTACCNGGCGAGCTGCTCTCCGTCAGTCCGAAGATTGCCGGCTGGATTCCGGNGGCTGTTTTTGTCTCAACGAGCGGGCCGTCTACATC-GG-CAAGTGGAAGCACGGAT-TCTTCAGCTACACC-GCTGTCGGC-GCAACCAATGTCG-GTTCGGTGGAGATT-T-TTATGGACGAGAAGCTGANAACTAACAAATGGGTCGGT-TTGGCCTGCGGCAGTCACAAACACAAGGAGTACGACGAGCTGGAAATGCCTGCTGACAAGTACCTGGAGAAGGGCGAACTAGTTGGCCAGTACCGGATGGGCAGTACTATTGTGCTTATCTTCGAAGCTCCGAAAGAATTCAAGTTCAACCTCTTCCCCGGACAGCGTGTCAAGGTCGGAGAGCGGTTAGGAACGTTCGAAGGTACGGAAGAAGCAGTGGAAAACCCCGAGGAAGTGAAGCGGGCGATTCAATCCTTGGACGCAGTGGACGCAGCGGTCACTGTGTAAAAGTATTCACCGATTACTTCATGCAGTATGAACACACGGAACTCGTTCTCGTCTCGGTAGTATCTCAGGTTGAAACTAGTTTTAGTTAACAATTATTTCTTTAAAGTGTATCTACACCCGTACCCAAGCCTAAGTACAATATTGATACAACTGCGCGTGATCGTTGGTTGCGGTTGTTAATCCTTTAGAATATATCGCGCCAAGTGATCGTGCGAACGCGAAGCGAAGTCTATCGGGAAAACATTTGTTTAACTAGTTGCTGTCGATCGAACGGACACACGAAGCACGAAGCATACCACAGCCCGGCCACTGGGCAAACCGGTATGCGTGCGTTGTTAGTTGCAAATACCGTAAGAGTAGTACATATTGTACGCGACTGGGATTGCTTTCCGATTGCTGTCAGTGGAGCGTATGACAAACGATAGGAGACGACGAGAGCCTGTAAAGACTTGTAGTATTTAAACAGCGTGCTACACAAACACACACATGCATACAAAGTGCTTTAGAGAGTGAGAACGTTTTGCACGATCGTGATTTAAATGTGATGTGAAATACCGTGAGCAATCCCGCGCTTGATTGCTGCACGAGCTATTGCCAACACATACACGCGTATACATGACCTCTAACCAGTTTGT-AAAAAAAAGAAGAAGACGGACCCACTGTTGACCTCAATTACCCAAAGGGTTCTTAGGTGAACCTTTTACGTATAGGTGATTTTGTAAACTACTAGCAATGTACGAGACCGTACGAAAACTGTACGTT]

[+] EMBL AL694004             [CGCCCACGGTTTATGCCATCGCCCGACAGCGTGCTGTATCAGTGCGTCATCTATCTAGACGCCGGGAGATTATCACCGCTATCCACTCGCCGACGCTATGTGAAACCTGGAACTGCGAAGGCACTTTTACCNGGCGAGCTGCTCTCCGTCAGTCCGAAGATTGCCGGCTGGATTCCGGNGGCTGTTTTTGTCTCAACGAGCGGGCCGTCTACATCTGGCCAAGTGGAAGCACGGATNTCTTCAGCTACACCTGCTGTCGGCAGCAACCAATGTCGNGTTCGGTGGAGATTCTCTTATGGACGAGAAGCTGANAACTAACAAATGGGTCGGTATTGGCCTGCGGCAGTCACAAACACAAGGAGTACGACGAGCTGGAAATGCCTGCTGACAAGTACCTGGAGAAGGGCGAACTAGTTGGCCAGTACCGGATGGGCAGTACTATTGTGCTTATCTTCGAAGCTCCGAAAGAATTCAAGTTCAACCTCTTCCCCGGACAGCGTGTCAAGGTCGGAGAGCGGTTAGGAACG TCGAAGGTACGGAAGAAGCAGTGGAAAACCCCGAGGAAGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX617098             [                                                                                                                                                                                                TCAACGAGCGGGCCGTCTACATC GG CAAGTGGAAGCACGGAT TCTTCAGCTACACC GCTGTCGGC GCAACCAATGTCG GTTCGGTGGAGATT T TTATGGACGAGAAGCTGAAAACTAACAAATGGGTCGGT TTGGCCTGCGGCAGTCACAAACACAAGGAGTACGACGAGCTGGAAATGCCTGCTGACAAGTACCTGGAGAAGGGCGAACTAGTTGGCCAGTTCCGGATGGGCAGTACTATTGTGCTTATCTTCGAAGCTCCGAAAGAATTCAAGTTCAACCTCTTCCCCGGACAGCGTGTCAAGGTCGGAGAGCGGTTAGGAACGTTCGAAGGTACGGAAGAAGCAGTGGAAAACCCCGAGGAAGTGAAGCGGGCGATTCAATCCTTGGACGCAGTGGACGCAGCGGTCACTGTGTAAAAGTATTCACCGATTACTTCATGCAGTATGAACACACGGAACTCGTTCTCGTCTCGGTAGTATCTCAGGTTGAAACTAGTTTTAGTTAACAATTATTTCTTTAAAGTGTATCTACACCCGTACCCAAGCCTAAGTACAATATTGATACAACTGCGCGTGATCGTTGGTTGCGGTTGTTAATCCTTTAGAATATATCGCGCCAAGTGATCGTGCGAACGCGAAGCGAAGTCTATCGGGAAAACATTTGTTTAACTAGTTGCTGTCGATCGAACGGACACACGAAGCACGAAGCATACCACAGCCCGGCCACTGGGCAAACCGGTATGCGTGCGTTGTTAGTTGCAAATACCGTAAGAGTAGTACATATTGTACGCGACTGGGATTGCTTTTCGATTGCTGTCAGTGGAGCGTA                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX624518             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGTCGGAGAGCGGTTAGGAACGTTCGAAGGTACGGAAGAAGCAGTGGAAAACCCCGAGGAAGTGAAGCGGGCGATTCAATCCTTGGACGCAGTGGACGCAGCGGTCACTGTGTAAAAGTATTCACCGATTACTTCATGCAGTATGAACACACGGAACTCGTTCTCGTCTCGGTAGTATCTCAGGTTGAAACTAGTTTTAGTTAACAATTATTTCTTTAAAGTGTATCTACACCCGTACCCAAGCCTAAGTACAATATTGATACAACTGCGCGTGATCGTTGGTTGCGGTTGTTAATCCTTTAGAATATATCGCGCCAAGTGATCGTGCGAACGCGAAGCGAAGTCTATCGGGAAAACATTTGTTTAACTAGTTGCTGTCGATCGAACGGACACACGAAGCACGAAGCATACCACAGCCCGGCCACTGGGCAAACCGGTATGCGTGCGTTGTTAGTTGCAAATACCGTAAGAGTAGTACATATTGTACGCGACTGGGATTGCTTTCCGATTGCTGTCAGTGGAGCGTATGACAAACGATAGGAGACGACGAGAGCCTGTAAAGACTTGTAGTATTTAAACAGCGTGCTA                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX613810             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAGCGGATAGGAACGCTCGAAGGGACGGAAGAAGCAGTGGAAAACCCCGAGGAAGTGAAGCGGGCGAATCAATCCTGGGACGCAGTGGACGCAGCGGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX616928             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAATCCTTGGACGCAGTGGACGCAGCGGTCACTGTGTAAAAGTATTCACCGATTACTTCATGCAGTATGAACACACGGAACTCGTTCTCGTCTCGGTAGTATCTCAGGTTGAAACTAGTTTTAGTTAACAATTATTTCTTTAAAGTGTATCTACACCCGTACCGAAGCCTAAGTACAATATTGATACAACTGCGCGTGATCGTTGGTTGCGGTTGTTAATCCTTTAGAATATATCGCGCCAAGTGATCGTGCGAACGCGAAGCGAAGTCTATCGGGAAAACATTTGTTTAACTAGTTGCTGTCGATCGAACGGACACACGAAGCACGAAGCATACCACAGCCCGGCCACTGGGCAAACCGGTATGCGTGCGTTGTTAGTTGCAAATACCGTCAGAGTAGTACATATTGTACGCGACTGGGATTGCTTTCCGATTGCTGTCAGTGGAGCGTATGACAAACGATAGGAGACGACGAGAGCCTGTAAAGACTTGTAGTATTTAAACAGCGTGCTACACAAACACACACATGCATACAAAGTGCTTTAGAGAGTGAGAACGTTTTGCACGATCGTGATTTAAATGTGATGTGAAATACCGTGAGCAATCCCGCGCTTGATTGCTGCACGAGCTATTGCCAACACATACACGCGTATACATGACCTCTAACCAGTTTGTAAAAAAAAAGAAGAAGACGGACCCACTGTTGACCTCAATTACCCAAAGGGTTCTTAGGTGAACCTTTTACGTATAGGTGATTTTGTAAACTACTAGCAATGTACGAGACCGTACGAAAACTGTACGTT]
[+] EMBL BX608939             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGTTCTCGTCTCGGTAGTATCTCAAGTTGAAACTAGTTTTAGTTAACAATTATTTCTTTAAAGTGTATCTACACCCGTACCCAAGCCTAAGTACAATATTGATACAACTGCGCGTGATCGTTGGTTGCGGTTGTTAATCCTTTAGAATATATCGCGCCAAGTGATCGTGCGAACGCGAAGCGAAGTCTATCGGGAAAACATTTGTTTAACTAGTTGCTGTCGATCGAACGGACACACGAAGCACGAAGCATACCACAGCCCGGCCACTGGGCAAACCGGTATGCGTGCGTTGTTAGTTGCAAATACCGTAAGAGTAGTACATATTGTACGCGACTGGGATTGCTTTCCGATTGCTGTCAGTGGAGCGTATGACAAACGATAGGAGACGACGAGAGCCTGTAAAGACTTGTAGTATTTAAACAGCGTGCTACACAAACACACACATGCATACAAAGTGCTTTAGAGAGTGAGAACGTTTTGCACGATCGTGATTTAAATGTGATGTGAAATACCGTGAGCAATCCCGCGCTTGATTGCTGCACGAGCTATTGCCAACACATACACGCGTATACATGACCTCTAACCAGTTTGT AAAAAAAAGAAGAAGACGGACCCACTGTTGACCTCA                                                                                           ]
[+] EMBL BX610747             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TACACCCGTACCCAAGCCTAAGTACAATATTGATACAACTGCGCGTGATCGTTGGTTGCGGTTGTTAATCCTTTAGAATATATCGCGCCAAGTGATCGTGCGAACGCGAAGCGAAGTCTACCTGGAAAACATTTGTTTAACTAGTTGCTGTCGATCGAACGGACACACGAAGCACGAAGCATACCACAGCCCGGCCACTGGGCAAACCGGTATGCGTGCGTTGTTAGTTGCAAATACCGTAAGAGTAGTACATATTGTACGCGACTGGGATTGCTTTCCGATTGCTGTCAGTGGAGCGTATGACAAACGATAGGAGACGACGAGAGCCTGTAAAGACTTGTAGTATTTAAACAGCGTGCTACACAAACACACACATGCATACAAAGTGCTTTAGAGAGTGAGAACGTTTTGCACGATCGTGATTTAAATGTGATGTGAAATACCGTGAGCAATCCCGCGCTTGATTGCTGCACGAGCTATTGCCAACACATACACGCGTATACATGACCTCTAACCAGTTTGTAAAAAAAAAGAAGAAGACGGACCCACTGTTGACCTCAATTACCCAAAGGGTTCTTAGGTGAACCTTTTACGTATAGGTGATTTTGTAAACTACTA                                 ]
[+] EMBL BX610748             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCCAAGCCTAAGTACAATATTGATACAACTGCGCGTGATCGTTGGTTGCGGTTGTTAATCCTTTAGAATATATCGCGCCAAGTGATCGTGCGAACGCGAAGCGAAGTCTACCTGGAAAACATTTGTTTAACTAGTTGCTGTCGATCGAACGGACACACGAAGCACGAAGCATACCACAGCCCGGCCACTGGGCAAACCGGTATGCGTGCGTTGTTAGTTGCAAATACCGTAAGAGTAGTACATATTGTACGCGACTGGGATTGCTTTCCGATTGCTGTCAGTGGAGCGTATGACAAACGATAGGAGACGACGAGAGCCTGTAAAGACTTGTAGTATTTAAACAGCGTGCTACACAAACACACACATGCATACAAAGTGCTTTAGAGAGTGAGAACGTTTTGCACGATCGTGATTTAAATGTGATGTGAAATACCGTGAGCAATCCCGCGCTTGATTGCTGCACGAGCTATTGCCAACACATACACGCGTATACATGACCTCTAA                                                                                                                                         ]
[+] EMBL BX610746             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCTTTAGAATATATCGCGCCAAGTGATCGTGCGAACGCGAAGCGAAGTCTACCTGGAAAACATTTGTTTAACTAGTTGCTGTCGATCGAACGGACACACGAAGCACGAAGCATACCACAGCCCGGCCACTGGGCAAACCGGTATGCGTGCGTTGTTAGTTGCAAATACCGTAAGAGTAGTACATATTGTACGCGACTGGGATTGCTTTCCGATTGCTGTCAGTGGAGCGTATGACAAACGATAG                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_9001#0 CGCCCACGGTTTATGCCATCGCCCGACAGCGTGCTGTATCAGTGCGTCATCTATCTAGAC GCCGGGAGATTATCACCGCTATCCACTCGCCGACGCTATGTGAAACCTGGAACTGCGAAG GCACTTTTACCNGGCGAGCTGCTCTCCGTCAGTCCGAAGATTGCCGGCTGGATTCCGGNG GCTGTTTTTGTCTCAACGAGCGGGCCGTCTACATCGGCAAGTGGAAGCACGGATTCTTCA GCTACACCGCTGTCGGCGCAACCAATGTCGGTTCGGTGGAGATTTTTATGGACGAGAAGC TGANAACTAACAAATGGGTCGGTTTGGCCTGCGGCAGTCACAAACACAAGGAGTACGACG AGCTGGAAATGCCTGCTGACAAGTACCTGGAGAAGGGCGAACTAGTTGGCCAGTACCGGA TGGGCAGTACTATTGTGCTTATCTTCGAAGCTCCGAAAGAATTCAAGTTCAACCTCTTCC CCGGACAGCGTGTCAAGGTCGGAGAGCGGTTAGGAACGTTCGAAGGTACGGAAGAAGCAG TGGAAAACCCCGAGGAAGTGAAGCGGGCGATTCAATCCTTGGACGCAGTGGACGCAGCGG TCACTGTGTAAAAGTATTCACCGATTACTTCATGCAGTATGAACACACGGAACTCGTTCT CGTCTCGGTAGTATCTCAGGTTGAAACTAGTTTTAGTTAACAATTATTTCTTTAAAGTGT ATCTACACCCGTACCCAAGCCTAAGTACAATATTGATACAACTGCGCGTGATCGTTGGTT GCGGTTGTTAATCCTTTAGAATATATCGCGCCAAGTGATCGTGCGAACGCGAAGCGAAGT CTATCGGGAAAACATTTGTTTAACTAGTTGCTGTCGATCGAACGGACACACGAAGCACGA AGCATACCACAGCCCGGCCACTGGGCAAACCGGTATGCGTGCGTTGTTAGTTGCAAATAC CGTAAGAGTAGTACATATTGTACGCGACTGGGATTGCTTTCCGATTGCTGTCAGTGGAGC GTATGACAAACGATAGGAGACGACGAGAGCCTGTAAAGACTTGTAGTATTTAAACAGCGT GCTACACAAACACACACATGCATACAAAGTGCTTTAGAGAGTGAGAACGTTTTGCACGAT CGTGATTTAAATGTGATGTGAAATACCGTGAGCAATCCCGCGCTTGATTGCTGCACGAGC TATTGCCAACACATACACGCGTATACATGACCTCTAACCAGTTTGTAAAAAAAAGAAGAA GACGGACCCACTGTTGACCTCAATTACCCAAAGGGTTCTTAGGTGAACCTTTTACGTATA GGTGATTTTGTAAACTACTAGCAATGTACGAGACCGTACGAAAACTGTACGTT



consensusID : consensus_9001#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 988
fasta sequence
                              [CCGGCACGATGGACTTCCACTGCTAGACTTAGTATCCAGCTGCGCGTGGTACAGCCGTGTTGGGTTTTGATTAGATTTTCGCGTTTCGGTCGAGGTCTCGCAATCGTGAATAATATTTGCGCTCGTTCGTGAGTGTGTGTGTGTATCTGGTGCCTGGATATCTTGCGAATCGTAATGCTGGATATTAAATTAACCAATTGAGCCGGGCGCGATCGCTCCGACGATCCACAGCAGCGCGCGTTTTGGGGATGGTCTGATTTCGCGTTCTCGATGCGGTCAACTTAAAGCCAAACCCCCGACAGTGGTCTGCGCGATGGACTATTGTGCAGCGGTCAATATATGGTAGTAGACAGCTTCAGCAGCAGCCGAATTCATCCTCCACAAACCAGCACAATCATCACCATCAGCAGCAGCACCAGCAGCACCAGCAGCATCATCATCAACAGCAGCAGCAGCAGTTCCACCATCAGTCGACGACAGCCGGCGGTTGGCTGACCTGGCGTGGTGTATTTCTTCGTTGGACACCCATCGGTATCTGTATGGTGGTGGCAGCAAAGTGGCACCTTCACAATCGTGAACTCGATAAGAAGGGCCTACCGCGGACCGCCGCAAAATGGCAGGCGAAAATGTACTGCTCGCTGCCCCTGCGCCTCATGAGCCGTTGCTGGGGCTGGATGGCCGATCAAAGAGTTCCCAAACCGGTGCGGCCCATGCTGTACGGGCTCTACTCGAACACGTTCGGTGTAAAGATGGAAGAAGCGGCCCCAGACAACTTCAAAGAGTATCGAAGCTTAGGAGAGTTTTTCACCCGCCCTCTCAAGGAAGACGCTCGACCAATCGATCCCAAGACCAGCTTCGTGTCACCGTGTGATGGACGAATTCTGCACTTCGGTGCCGCCAATTCCAACCTAATCGAACAGGTCAAAGGAGTATCGTACAGTTTAGAGGCCTTCCTGGGACCACCGACCTGGACAACCAAGGACGCCCC]

[+] EMBL BM631707             [CCGGCACGATGGACTTCCACTGCTAGACTTAGTATCCAGCTGCGCGTGGTACAGCCGTGTTGGGTTTTGATTAGATTTTCGCGTTTCGGTCGAGGTCTCGCAATCGTGAATAATATTTGCGCTCGTTCGTGAGTGTGTGTGTGTATCTGGTGCCTGGATATCTTGCGAATCGTAATGCTGGATATTAAATTAACCAATTGAGCCGGGCGCGATCGCTCCGACGATCCACAGCAGCGCGCGTTTTGGGGATGGTCTGATTTCGCGTTCTCGATGCGGTCAACTTAAAGCCAAACCCCCGACAGTGGTCTGCGCGATGGACTATTGTGCAGCGGTCAATATATGGTAGTAGACAGCTTCAGCAGCAGCCGAATTCATCCTCCACAAACCAGCACAATCATCACCATCAGCAGCAGCACCAGCAGCACCAGCAGCATCATCATCAACAGCAGCAGCAGCAGTTCCACCATCAGTCGACGACAGCCGGCGGTTGGCTGACCTGGCGTGGTGTATTTCTTCGTTGGACACCCATCGGTATCTGTATGGTGGTGGCAGCAAAGTGGCACCTTCACAATCGTGAACTCGATAAGAAGGGCCTACCGCGGACCGCCGCAAAATGGCAGGCGAAAATGTACTGCTCGCTGCCCCTGCGCCTCATGAGCCGTTGCTGGGGCTGGATGGCCGATCAAAGAGTTCCCAAAC                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM583828             [                                                                                                                                                                                                                                                                                                                                  ccgGCAGCGGTCAATATATGGTAGTAGACAGCTTCAGCAGCAGCCGAATTCATCCTCCACAAACCAGCACAATCATCACCATCAGCAG      CAGCAGCACCAGCAGCATCATCATCAACAGCAGCAGCAGCAGTTCCACCATCAGTCGTCGACAGCCGGCGGTTGGCTGACCTGGCGTGGTGTATTTCTTCGTTGGACACCCATCGGTATCTGTATGGTGGTGGCAGCAAAGTGGCACCTTCACAATCGTGAACTCGATAAGAAGGGCCTACCGCGGACCGCCGCGAAATGGCAGGCGAAAATGTACTGCTCGCTGCCCCTGCGCCTCATGAGCCGTTGCTGGGGCTGGATGGCCGATCGAAGAGTTCCCAAACCGGTGCGGCCCATGCTGTACGGGCTCTACTCGAACACGTTCGGTGTAAAGATGGAAGAAGCGGCCCCAGACAACTTCAAAGAGTATCGAAGCTTAGGAGAGTTTTTCACCCGCCCTCTCAAGGAAGACGCTCGACCAATCGATCCCAAGACCAGCTTCGTGTCACCGTGTGATGGACGAATTCTGCACTTCGGTGCCGCCAATTCCAACCTAATCGAACAGGTCAAAGGAGTATCGTACAGTTTAGAGGCCTTCCTGGGACCACCGACCTGGACAACCAAGGACGCCCC]


>consensus_9001#1 CCGGCACGATGGACTTCCACTGCTAGACTTAGTATCCAGCTGCGCGTGGTACAGCCGTGT TGGGTTTTGATTAGATTTTCGCGTTTCGGTCGAGGTCTCGCAATCGTGAATAATATTTGC GCTCGTTCGTGAGTGTGTGTGTGTATCTGGTGCCTGGATATCTTGCGAATCGTAATGCTG GATATTAAATTAACCAATTGAGCCGGGCGCGATCGCTCCGACGATCCACAGCAGCGCGCG TTTTGGGGATGGTCTGATTTCGCGTTCTCGATGCGGTCAACTTAAAGCCAAACCCCCGAC AGTGGTCTGCGCGATGGACTATTGTGCAGCGGTCAATATATGGTAGTAGACAGCTTCAGC AGCAGCCGAATTCATCCTCCACAAACCAGCACAATCATCACCATCAGCAGCAGCACCAGC AGCACCAGCAGCATCATCATCAACAGCAGCAGCAGCAGTTCCACCATCAGTCGACGACAG CCGGCGGTTGGCTGACCTGGCGTGGTGTATTTCTTCGTTGGACACCCATCGGTATCTGTA TGGTGGTGGCAGCAAAGTGGCACCTTCACAATCGTGAACTCGATAAGAAGGGCCTACCGC GGACCGCCGCAAAATGGCAGGCGAAAATGTACTGCTCGCTGCCCCTGCGCCTCATGAGCC GTTGCTGGGGCTGGATGGCCGATCAAAGAGTTCCCAAACCGGTGCGGCCCATGCTGTACG GGCTCTACTCGAACACGTTCGGTGTAAAGATGGAAGAAGCGGCCCCAGACAACTTCAAAG AGTATCGAAGCTTAGGAGAGTTTTTCACCCGCCCTCTCAAGGAAGACGCTCGACCAATCG ATCCCAAGACCAGCTTCGTGTCACCGTGTGATGGACGAATTCTGCACTTCGGTGCCGCCA ATTCCAACCTAATCGAACAGGTCAAAGGAGTATCGTACAGTTTAGAGGCCTTCCTGGGAC CACCGACCTGGACAACCAAGGACGCCCC



consensusID : consensus_9001#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence
                              [CCGCGGACGCGTGGGTTCTTGCGCTGCTAGCCACGCAGCAAACGCCCAGTACACCCGCTGGAAAGTGCGCGGAAAGAACGGGTCAGGCGCAAATCAGCTGATCGCGATCAGTGCATCTAGCTCGATCGACTCGGAAGGTGGTTTAAATAGTAGCAGCCGTGCAAACAGCGCAACAAATCGTTCCGTTCGATCGAGCGCGAAAGACGATCGACCTGTCCGAGCGTGTGGTTCAGTGCGTGTAAAGAGCGAGTGTACTTTAGCAGTAGCACCACAAGGAAACAGTTGCCGTTCAGGATGGCCGTGTTTATGCCAAAATATAGACTGTTCTCGAAGGCGGTCAACTTAAAGCCAAACCCCCGACAGTGGTCTGCGCGATGGACTATTTGTGCAGCGGTCAATATATGGTAGTAGACAGCTTCAGCAGCAGCCGAATTCATCCTCCACAAACCAGCACAATCATCACCATCAGCAGCAGCAGCACCAGCAGCATCATCATCAACAGCAGCAGCAGCAGTTCCACCATCAGTCGTCGACAGGTAAATCCCGTAGCAAAGTTTACAGAAAGTGGAGTTGGAAGGCAGGAGCGGGCTGGACTATATTATCGGTTTTTGGATTGGTGGTTACTAGCAGCCGGCGGTTGGCTGACCTGGCGTGGTGTATTTCTTCGTTGGACACCCATCGGTATTCTGGTATGGTGGTG]

[+] EMBL BM608236             [CCGCGGACGCGTGGGTTCTTGCGCTGCTAGCCACGCAGCAAACGCCCAGTACACCCGCTGGAAAGTGCGCGGAAAGAACGGGTCAGGCGCAAATCAGCTGATCGCGATCAGTGCATCTAGCTCGATCGACTCGGAAGGTGGTTTAAATAGTAGCAGCCGTGCAAACAGCGCAACAAATCGTTCCGTTCGATCGAGCGCGAAAGACGATCGACCTGTCCGAGCGTGTGGTTCAGTGCGTGTAAAGAGCGAGTGTACTTTAGCAGTAGCACCACAAGGAAACAGTTGCCGTTCAGGATGGCCGTGTTTATGCCAAAATATAGACTGTTCTCGAAGGCGGTCAACTTAAAGCCAAACCCCCGACAGTGGTCTGCGCGATGGACTATTTGTGCAGCGGTCAATATATGGTAGTAGACAGCTTCAGCAGCAGCCGAATTCATCCTCCACAAACCAGCACAATCATCACCATCAGCAGCAGCAGCACCAGCAGCATCATCATCAACAGCAGCAGCAGCAGTTCCACCATCAGTCGTCGACAGGTAAATCCCGTAGCAAAGTTTACAGAAAGTGGAGTTGGAAGGCAGGAGCGGGCTGGACTATATTATCGGTTTTTGGATTGGTGGTTACTAGCAGCCGGCGGTTGGCTGACCTGGCGTGGTGTATTTCTTCGTTGGACACCCATCGGTATTCTGGTATGGTGGTG]


>consensus_9001#2 CCGCGGACGCGTGGGTTCTTGCGCTGCTAGCCACGCAGCAAACGCCCAGTACACCCGCTG GAAAGTGCGCGGAAAGAACGGGTCAGGCGCAAATCAGCTGATCGCGATCAGTGCATCTAG CTCGATCGACTCGGAAGGTGGTTTAAATAGTAGCAGCCGTGCAAACAGCGCAACAAATCG TTCCGTTCGATCGAGCGCGAAAGACGATCGACCTGTCCGAGCGTGTGGTTCAGTGCGTGT AAAGAGCGAGTGTACTTTAGCAGTAGCACCACAAGGAAACAGTTGCCGTTCAGGATGGCC GTGTTTATGCCAAAATATAGACTGTTCTCGAAGGCGGTCAACTTAAAGCCAAACCCCCGA CAGTGGTCTGCGCGATGGACTATTTGTGCAGCGGTCAATATATGGTAGTAGACAGCTTCA GCAGCAGCCGAATTCATCCTCCACAAACCAGCACAATCATCACCATCAGCAGCAGCAGCA CCAGCAGCATCATCATCAACAGCAGCAGCAGCAGTTCCACCATCAGTCGTCGACAGGTAA ATCCCGTAGCAAAGTTTACAGAAAGTGGAGTTGGAAGGCAGGAGCGGGCTGGACTATATT ATCGGTTTTTGGATTGGTGGTTACTAGCAGCCGGCGGTTGGCTGACCTGGCGTGGTGTAT TTCTTCGTTGGACACCCATCGGTATTCTGGTATGGTGGTG



consensusID : consensus_9001#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence
                              [CCGCGGACGCGTGGGCAGCAGCAGCAGCAGTTCCACCATCAGTCGTCGACAGCCGGCGGTTGGCTGACCTGGCGTGGTGTATTTCTTCGTTGGACACCCATCGGTATCTGTATGGTGGTGGCAGCAAAGTGGCACCTTCACAATCGTGAACTCGATAAGAAGGGCCTACCGCGGACCGCCGCGAAATGGCAGGCGAAAATGTACTGCTCGCTGCCCCTGCGCCTCATGAGCCGTTGCTGGGGCTGGATGGCCGATCGAAGAGTTCCCAAACCGGTGCGGCCCATGCTGTACGGGCTCTACTCGAACACGTTCGGTGTAAAGATGGAAGAAGCGGCCCCAGACAACTTCAAAGAGTATCGAAGCTTAGGAGAGTTTTTCACCCGCCCTCTCAAGGAAGACGCTCGACCAATCGATCCCAAGACCAGCTTCGTGTCACCGTGTGATGGACGAATTCTGCACTTCGGTGCCGCCAATTCCAACCTAATCGAACAGGTCAAAGGAGTATCGTACAGTTTAGAGGCCTTCCTGGGACCACCGACCTGGACAACCAAGGACGCCCCCGAGATGGTGGAGAAGGTGAAGAAAAACGCCTCGCCCGACAGCGTGCTGTATCAGTGCGTCATCTATCTAGCGCCGGGAGATTATCACCGCTTCCACTCGCCGACGCTATGGAAACCGGAACT]

[+] EMBL BM596741             [CCGCGGACGCGTGGGCAGCAGCAGCAGCAGTTCCACCATCAGTCGTCGACAGCCGGCGGTTGGCTGACCTGGCGTGGTGTATTTCTTCGTTGGACACCCATCGGTATCTGTATGGTGGTGGCAGCAAAGTGGCACCTTCACAATCGTGAACTCGATAAGAAGGGCCTACCGCGGACCGCCGCGAAATGGCAGGCGAAAATGTACTGCTCGCTGCCCCTGCGCCTCATGAGCCGTTGCTGGGGCTGGATGGCCGATCGAAGAGTTCCCAAACCGGTGCGGCCCATGCTGTACGGGCTCTACTCGAACACGTTCGGTGTAAAGATGGAAGAAGCGGCCCCAGACAACTTCAAAGAGTATCGAAGCTTAGGAGAGTTTTTCACCCGCCCTCTCAAGGAAGACGCTCGACCAATCGATCCCAAGACCAGCTTCGTGTCACCGTGTGATGGACGAATTCTGCACTTCGGTGCCGCCAATTCCAACCTAATCGAACAGGTCAAAGGAGTATCGTACAGTTTAGAGGCCTTCCTGGGACCACCGACCTGGACAACCAAGGACGCCCCCGAGATGGTGGAGAAGGTGAAGAAAAACGCCTCGCCCGACAGCGTGCTGTATCAGTGCGTCATCTATCTAGCGCCGGGAGATTATCACCGCTTCCACTCGCCGACGCTATGGAAACCGGAACT]


>consensus_9001#3 CCGCGGACGCGTGGGCAGCAGCAGCAGCAGTTCCACCATCAGTCGTCGACAGCCGGCGGT TGGCTGACCTGGCGTGGTGTATTTCTTCGTTGGACACCCATCGGTATCTGTATGGTGGTG GCAGCAAAGTGGCACCTTCACAATCGTGAACTCGATAAGAAGGGCCTACCGCGGACCGCC GCGAAATGGCAGGCGAAAATGTACTGCTCGCTGCCCCTGCGCCTCATGAGCCGTTGCTGG GGCTGGATGGCCGATCGAAGAGTTCCCAAACCGGTGCGGCCCATGCTGTACGGGCTCTAC TCGAACACGTTCGGTGTAAAGATGGAAGAAGCGGCCCCAGACAACTTCAAAGAGTATCGA AGCTTAGGAGAGTTTTTCACCCGCCCTCTCAAGGAAGACGCTCGACCAATCGATCCCAAG ACCAGCTTCGTGTCACCGTGTGATGGACGAATTCTGCACTTCGGTGCCGCCAATTCCAAC CTAATCGAACAGGTCAAAGGAGTATCGTACAGTTTAGAGGCCTTCCTGGGACCACCGACC TGGACAACCAAGGACGCCCCCGAGATGGTGGAGAAGGTGAAGAAAAACGCCTCGCCCGAC AGCGTGCTGTATCAGTGCGTCATCTATCTAGCGCCGGGAGATTATCACCGCTTCCACTCG CCGACGCTATGGAAACCGGAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9001#1      ------------------------------------------------------------
consensus_9001#3      ------------------------------------------------------------
consensus_9001#2      ------------------------------------------------------------
consensus_9001#0      CGCCCACGGTTTATGCCATCGCCCGACAGCGTGCTGTATCAGTGCGTCATCTATCTAGAC 60
                                                                                  

consensus_9001#1      --------------------------------------------------CCGGCACGAT 10
consensus_9001#3      ------------------------------------------------------------
consensus_9001#2      ------------------------------------------------------------
consensus_9001#0      GCCGGGAGATTATCACCGCTATCCACTCGCCGACGCTATGTGAAACCTGGAACTGCGAAG 120
                                                                                  

consensus_9001#1      GGACTTCCACTGCTAGACTTAGTATCCAGCTGCGCGTGGTACAGCCGTGTTGGGTTTTGA 70
consensus_9001#3      ------------------------------------------------------------
consensus_9001#2      ------------------------------------------------------------
consensus_9001#0      GCACTTTTACCNGGCGAGCTGCTCTCCGTCAGTCCGAAGATTGCCGGCTGGATTCCGGNG 180
                                                                                  

consensus_9001#1      TTAGATTTTCGCGTTTCGGTCGAGGTCTCGCAATCGTGAATAATATTTGCGCTCGTTCGT 130
consensus_9001#3      ------------------------------------------------------------
consensus_9001#2      ------------------------------------------------------------
consensus_9001#0      GCTGTTTTTGTCTCAACGAGCGGGCCGTCTACATCGGCAAGTGGAAGCACGGATTCTTCA 240
                                                                                  

consensus_9001#1      GAGTGTGTGTGTGTATCTGGTGCCTGGATATCTTGCGAATCGTAATGCTGGATATTAAAT 190
consensus_9001#3      ------------------------------------------------------------
consensus_9001#2      ------------------------------------------------------------
consensus_9001#0      GCTACACCGCTGTCGGCGCAACCAATGTCGGTTCGGTGGAGATTTTTATGGACGAGAAGC 300
                                                                                  

consensus_9001#1      TAACCAATTGAGCCGGGCGCGATCGCTCCGACGATCCACAGCAGCGCGCGTTTTGGGGAT 250
consensus_9001#3      ------------------------------------------------------------
consensus_9001#2      ------------------------------------------------------------
consensus_9001#0      TGANAACTAACAAATGGGTCGGTTTGGCCTGCGGCAGTCACAAACACAAGGAGTACGACG 360
                                                                                  

consensus_9001#1      GGTCTGATTTCGCGTTCTCGATGCGGTCAACTTAAAGCCAAACCCCCGAC-AGTGGTCTG 309
consensus_9001#3      ------------------------------------------------------------
consensus_9001#2      ----------------------------CCGCGGACGCGTGGGTTCTTGC-GCTGCTAGC 31
consensus_9001#0      AGCTGGAAATGCCTGCTGACAAGTACCTGGAGAAGGGCGAACTAGTTGGCCAGTACCGGA 420
                                                                                  

consensus_9001#1      CGCGATGGACTATTGTGC--AGCGGTCAATATATGGTAGTAGACAGCTTCAGCAGCAGCC 367
consensus_9001#3      ------------------------------------------------------------
consensus_9001#2      CACGCAGCAAACGCCCAG--TACACCCGCTGGAAAGTGCGCGGAAAGAACGGGTCAGGCG 89
consensus_9001#0      TGGGCAGTACTATTGTGCTTATCTTCGAAGCTCCGAAAGAATTCAAGTTCAACCTCTTCC 480
                                                                                  

consensus_9001#1      GAATTCATCCTCCACAAACCAGCACAATCATCACCATCAGCAGCAGCACCAGCAGCACCA 427
consensus_9001#3      ------------------------------------------------------------
consensus_9001#2      CAAATCAGCTGATCGCGATCAGTGCATCTAGCTCGATCGACTCGGAAGGTGGTTTAAATA 149
consensus_9001#0      CCGGACAGCGTGTCAAGGTCGG-AGAGCGGTTAGGAACGTTCGAAGGTACGGAAGAAGCA 539
                                                                                  

consensus_9001#1      GCAGCATCATCATCAACAGCAGCAGCAGCAGTTCCACCATCAGTCGACGACAGC-CGGCG 486
consensus_9001#3      -CCGCGGACGCGTGGGCAGCAGCAGCAGCAGTTCCACCATCAGTCGTCGACAGC-CGGCG 58
consensus_9001#2      GTAGCAGCCGTGCAAACAGCGCAACAAATCGTTCCGT--TCGATCGAGCGCGAA-AGACG 206
consensus_9001#0      GTGGAAAACCCCGAGGAAGTGAAGCGGGCGATTCAATCCTTGGACGCAGTGGACGCAGCG 599
                         *             **            ***     *    **            **

consensus_9001#1      GTTGGC-TGACCTGGCGTGG-TGTATTTCTTCGT------TGGACACCCA----TCGGTA 534
consensus_9001#3      GTTGGC-TGACCTGGCGTGG-TGTATTTCTTCGT------TGGACACCCA----TCGGTA 106
consensus_9001#2      ATCGACCTGTCCGAGCGTG--TGGTTCAGTGCGT------GTAAAGAGCG----AGTGTA 254
consensus_9001#0      GTCACTGTGTAAAAGTATTCACCGATTACTTCATGCAGTATGAACACACGGAACTCGTTC 659
                       *     **     *  *       *   * * *         *    *         * 

consensus_9001#1      TCTGTATGGTGGTGGCAGCAAAGTGGCACCT-TCACAATCGTGAACTCGATAAGAAGGGC 593
consensus_9001#3      TCTGTATGGTGGTGGCAGCAAAGTGGCACCT-TCACAATCGTGAACTCGATAAGAAGGGC 165
consensus_9001#2      CTTTAGCAGTAGCACCA-CAAGGAAACAGTT-GC-CGTTCAGGATGGCCGTGTTTATGCC 311
consensus_9001#0      TCGTCTCGGTAGTATCT-CAGGTTGAAACTAGTTTTAGTTAACAATTATTTCTTTAAAGT 718
                              ** *   *  **       *          *    *      *    *    

consensus_9001#1      CTACCGCGGACCGC---C--GCAAAATGGCAGGCGAAAATGTACTGCTCGCTGCCCCTGC 648
consensus_9001#3      CTACCGCGGACCGC---C--GCGAAATGGCAGGCGAAAATGTACTGCTCGCTGCCCCTGC 220
consensus_9001#2      AAAATATAGACTGTTCTC--GAAGGCGGTCAACTTAAAGCCAAACCCCCGACAGTGGTCT 369
consensus_9001#0      GTATCTACACCCGTACCCAAGCCTAAGTACAATATTGATACAACTGCGCGTGATCGTTGG 778
                        *       * *    *  *        **      *    *   * **       *  

consensus_9001#1      GCCTCATGAGCCGTTGCTGGGGCTGGATGGCCGATCAAAGAGTTCCCAAACCGGTGCGGC 708
consensus_9001#3      GCCTCATGAGCCGTTGCTGGGGCTGGATGGCCGATCGAAGAGTTCCCAAACCGGTGCGGC 280
consensus_9001#2      GCGCGATGGACTATTTGTGCAGC-----GGTCAAT--ATATGGTAGTAGACAGCTTCAGC 422
consensus_9001#0      TTGCGGTTGTTAATCCTTTAGAATATATCGCGCCAAGTGATCGTGCGAACGCGAAGCGAA 838
                            *      *   *           *             *   *    *   *   

consensus_9001#1      CCATGCTGTACGGGCTCTACTCGAACACGTT-CGGT-GTAAAGAT-GGAAGAAGCGGCCC 765
consensus_9001#3      CCATGCTGTACGGGCTCTACTCGAACACGTT-CGGT-GTAAAGAT-GGAAGAAGCGGCCC 337
consensus_9001#2      AGCAGCCGAATTCATCCTCCACAAACCAGCA-CAATCATCACCATCAGCAGCAGCAGCAC 481
consensus_9001#0      GTCTATCGGGAAAACATTTGTTTAACTAGTTGCTGTCGATCGAACGGACACACGAAGCAC 898
                             *         *     ***  *   *  *       *     *   *  ** *

consensus_9001#1      CAGACA-ACTTCAAA--GAGTATCG---AAGCTTAGGAGAGTTTTTCACCCGCCCT---- 815
consensus_9001#3      CAGACA-ACTTCAAA--GAGTATCG---AAGCTTAGGAGAGTTTTTCACCCGCCCT---- 387
consensus_9001#2      CAG-CA-GCATCATC--ATCAACAG---CAGCAGCAGCAGTTCCACCATCAGTCGT---- 530
consensus_9001#0      GAAGCATACCACAGCCCGGCCACTGGGCAAACCGGTATGCGTGCGTTGTTAGTTGCAAAT 958
                       *  **  *  **        *  *    * *         *         *        

consensus_9001#1      -CTCAAGGAAGACGCTCGACCAATCGATCCCAAGACCAGCTTCGTGTCACCGTGTGATGG 874
consensus_9001#3      -CTCAAGGAAGACGCTCGACCAATCGATCCCAAGACCAGCTTCGTGTCACCGTGTGATGG 446
consensus_9001#2      -CGACAGGTAAATCCCGTAGCAAAGTTTACAGAAAGTGGAGTTG-GAAGGCAGGAGCGGG 588
consensus_9001#0      ACCGTAAGAGTAGTACATATTGTACGCGACTGGGATTGCTTTCCGATTGCTGTCAGTGGA 1018
                       *   * *   *      *          *    *      *             *  * 

consensus_9001#1      ACGAATTCTGCACTTC----GGTGCCGCCAATTCCAACCTAATCG-AACAGGTCAAAGGA 929
consensus_9001#3      ACGAATTCTGCACTTC----GGTGCCGCCAATTCCAACCTAATCG-AACAGGTCAAAGGA 501
consensus_9001#2      CTGGACTATATTATCG----GTTTTTG--GATTGGTGGTTACTAGCAGCCGGCGGTTGGC 642
consensus_9001#0      GCGTATGACAAACGATAGGAGACGACGAGAGCCTGTAAAGACTTGTAGTATTTAAACAGC 1078
                        * *               *     *             * * * *           * 

consensus_9001#1      GTATCGTACAGTTTAGAGGCCTTCCTGGGACCACCGACCTGGACAACCAAGGACGCC--- 986
consensus_9001#3      GTATCGTACAGTTTAGAGGCCTTCCTGGGACCACCGACCTGGACAACCAAGGACGCC--- 558
consensus_9001#2      TGACCTGGCGTGGTGTATTTCTTCGTTGGAC-ACCCATC--GGTATTCTGGTATGGT--- 696
consensus_9001#0      GTGCTACACAAA-CACACACATGCATACAA--AGTGCTTTAGAGAGT-GAGAACGTTTTG 1134
                              *       *    * * *   *  *        *  *     * * *     

consensus_9001#1      CC---------------------------------------------------------- 988
consensus_9001#3      CCCGAGATGGTGGAGAAGGTGAAGAAAAACGCCTCGCCCGACAGCGTGCTGTATCAGTGC 618
consensus_9001#2      GGTG-------------------------------------------------------- 700
consensus_9001#0      CACGATCGTGATTTAAATGTGATGTGAAATACCGTGAGCAATCCCGCGCTTGATTGCTGC 1194
                                                                                  

consensus_9001#1      ------------------------------------------------------------
consensus_9001#3      GTCATCTATCTAGCGCCGGGAGATTATCACCGCTTCCACTCGCCGACGCTATGGAAACCG 678
consensus_9001#2      ------------------------------------------------------------
consensus_9001#0      ACGAGCTATTGCCAACACATACACGCGTATACATGACCTCTAACCAGTTTGTAAAAAAAA 1254
                                                                                  

consensus_9001#1      ------------------------------------------------------------
consensus_9001#3      GAACT------------------------------------------------------- 683
consensus_9001#2      ------------------------------------------------------------
consensus_9001#0      GAAGAAGACGGACCCACTGTTGACCTCAATTACCCAAAGGGTTCTTAGGTGAACCTTTTA 1314
                                                                                  

consensus_9001#1      -----------------------------------------------------------
consensus_9001#3      -----------------------------------------------------------
consensus_9001#2      -----------------------------------------------------------
consensus_9001#0      CGTATAGGTGATTTTGTAAACTACTAGCAATGTACGAGACCGTACGAAAACTGTACGTT 1373
                                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)