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Anopheles gambiae
cluster # 914 cluster # 914       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_914#0 length = 610 sequences # 1  
consensus_914#1 length = 337 sequences # 1  

consensusID : consensus_914#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence
                              [CCGCTCCGCACGAAAACGTGGTTTCGTGAAGGAAACAAAATATTTATCCGTGCTAAAATCCGTGCTCACCAGCTTCGACCAGCTCTATTAGCCGCGTGGCACGCAGTTTTACGATACACGATAAGCGCCAGCCTGCGACCGAACATGGAATACGGTGCATTAGCCTAGCGCCCGGCTTGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTGTGATTGTGACCACCCGAATTTGCGGTGTGCGAAGAAGAAGAAGAAGCAGAACGGCGTGCTAACCGGAAGCTGAGCTTTTTGTGAAAGGAAGCGCAAGTTTTACACACACAGACACGGCAGCGCGCGCTTGGGGCACTTGGGTCGCGTTGCGCCGAGCGGGTTTGTTCAAAGTTTTGTGTGTTGTGTGTGCGTTATTTTTACTCATTTACAAATTAACTGAGAGTTTTGGTGTGGAAGCAAAACATACGCGAAAACTCGTCACGTCAAACCTCGAAGCTTGCGCGATCCACCTAAAGAGAGCCGTTTCCGCTAATCGGAAAATAATTG]

[+] EMBL BM596339             [CCGCTCCGCACGAAAACGTGGTTTCGTGAAGGAAACAAAATATTTATCCGTGCTAAAATCCGTGCTCACCAGCTTCGACCAGCTCTATTAGCCGCGTGGCACGCAGTTTTACGATACACGATAAGCGCCAGCCTGCGACCGAACATGGAATACGGTGCATTAGCCTAGCGCCCGGCTTGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTGTGATTGTGACCACCCGAATTTGCGGTGTGCGAAGAAGAAGAAGAAGCAGAACGGCGTGCTAACCGGAAGCTGAGCTTTTTGTGAAAGGAAGCGCAAGTTTTACACACACAGACACGGCAGCGCGCGCTTGGGGCACTTGGGTCGCGTTGCGCCGAGCGGGTTTGTTCAAAGTTTTGTGTGTTGTGTGTGCGTTATTTTTACTCATTTACAAATTAACTGAGAGTTTTGGTGTGGAAGCAAAACATACGCGAAAACTCGTCACGTCAAACCTCGAAGCTTGCGCGATCCACCTAAAGAGAGCCGTTTCCGCTAATCGGAAAATAATTG]


>consensus_914#0 CCGCTCCGCACGAAAACGTGGTTTCGTGAAGGAAACAAAATATTTATCCGTGCTAAAATC CGTGCTCACCAGCTTCGACCAGCTCTATTAGCCGCGTGGCACGCAGTTTTACGATACACG ATAAGCGCCAGCCTGCGACCGAACATGGAATACGGTGCATTAGCCTAGCGCCCGGCTTGT GACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTT CTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTGTGATTGTGACCACCCGA ATTTGCGGTGTGCGAAGAAGAAGAAGAAGCAGAACGGCGTGCTAACCGGAAGCTGAGCTT TTTGTGAAAGGAAGCGCAAGTTTTACACACACAGACACGGCAGCGCGCGCTTGGGGCACT TGGGTCGCGTTGCGCCGAGCGGGTTTGTTCAAAGTTTTGTGTGTTGTGTGTGCGTTATTT TTACTCATTTACAAATTAACTGAGAGTTTTGGTGTGGAAGCAAAACATACGCGAAAACTC GTCACGTCAAACCTCGAAGCTTGCGCGATCCACCTAAAGAGAGCCGTTTCCGCTAATCGG AAAATAATTG



consensusID : consensus_914#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence
                              [GCTGCTGCGGTGTGGTCAAATTTTGGGTGTGTATGTGTGCGTGTGTGTATGTGTTGTGTTGTGCACGGTCCTTCGCCCAGCAGTGTCGGGGTCGGTTTGGTGGTCGGTGTAGTATCCCTTTTCGAACTGACACCCAGTGCCCGCAGCGTGAAGCAACGTGCTCTCGGATTTGGACAAATGGAATGCCTTTTTCTCACACGCTTTTTATGATTTTTGCTTCTCCATCTACACAGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTG]

[+] EMBL AGA281865            [GCTGCTGCGGTGTGGTCAAATTTTGGGTGTGTATGTGTGCGTGTGTGTATGTGTTGTGTTGTGCACGGTCCTTCGCCCAGCAGTGTCGGGGTCGGTTTGGTGGTCGGTGTAGTATCCCTTTTCGAACTGACACCCAGTGCCCGCAGCGTGAAGCAACGTGCTCTCGGATTTGGACAAATGGAATGCCTTTTTCTCACACGCTTTTTATGATTTTTGCTTCTCCATCTACACAGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTG]


>consensus_914#1 GCTGCTGCGGTGTGGTCAAATTTTGGGTGTGTATGTGTGCGTGTGTGTATGTGTTGTGTT GTGCACGGTCCTTCGCCCAGCAGTGTCGGGGTCGGTTTGGTGGTCGGTGTAGTATCCCTT TTCGAACTGACACCCAGTGCCCGCAGCGTGAAGCAACGTGCTCTCGGATTTGGACAAATG GAATGCCTTTTTCTCACACGCTTTTTATGATTTTTGCTTCTCCATCTACACAGTGACGGC GAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGT GAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_914#0      -------------------------------------------------------CCGCT 5
consensus_914#1      GCTGCTGCGGTGTGGTCAAATTTTGGGTGTGTATGTGTGCGTGTGTGTATGTGTTGTGTT 60
                                                                              * *

consensus_914#0      CCGCACGAAAACGTGGTT--TCGTGAAGGAAACAAAATATTTATCCGTGCTAAAATCCGT 63
consensus_914#1      GTGCACGGTCCTTCGCCCAGCAGTGTCGGGGTCGGTTTGGTGGTCGGTG-TAGTATCCCT 119
                       *****       *       ***  **   *    *  *  ** *** **  **** *

consensus_914#0      GCTCACCAGCTTCGACCAGCTCTATTAGCCGCGTGGCACGCAGTTTTACGATACACGATA 123
consensus_914#1      TTTCGA-ACTGACACCCAGTGCCCGCAGC-GTGAAGCAACGTGCTCTCGGATTTG-GACA 176
                       **   *    *  ****  *    *** * *  ***    * * *  ***    ** *

consensus_914#0      AGCGCCAGCCTGCGACCGAACATGGAATACGGTGCATTAGCCTAGCGCCCGGCTT-GTGA 182
consensus_914#1      AATGGAATGCCTTTTTCTCACACGCTTTTTATGATTTTTGCTTCTCCATCTACACAGTGA 236
                     *  *  *  *      *  *** *   *        ** ** *  *   *  *   ****

consensus_914#0      CGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCT 242
consensus_914#1      CGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCT 296
                     ************************************************************

consensus_914#0      TTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTGTGATTGTGACCACCCGAAT 302
consensus_914#1      TTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTG------------------- 337
                     *****************************************                   

consensus_914#0      TTGCGGTGTGCGAAGAAGAAGAAGAAGCAGAACGGCGTGCTAACCGGAAGCTGAGCTTTT 362
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      TGTGAAAGGAAGCGCAAGTTTTACACACACAGACACGGCAGCGCGCGCTTGGGGCACTTG 422
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      GGTCGCGTTGCGCCGAGCGGGTTTGTTCAAAGTTTTGTGTGTTGTGTGTGCGTTATTTTT 482
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      ACTCATTTACAAATTAACTGAGAGTTTTGGTGTGGAAGCAAAACATACGCGAAAACTCGT 542
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      CACGTCAAACCTCGAAGCTTGCGCGATCCACCTAAAGAGAGCCGTTTCCGCTAATCGGAA 602
consensus_914#1      ------------------------------------------------------------
                                                                                 

consensus_914#0      AATAATTG 610
consensus_914#1      --------
                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)