These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1709 fasta sequence [CCGCCACTTTCAGGTTGTCAATGGGACCGGTCCGTCC-CGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGT-GGCGGAAGCGGTAGCGGGAAAACGAAAGCGCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATC-GATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATCGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTAT-CTGAGCATAGC-GGC-GGCCGGCT--TTTTGG-TGTTTAT-TCTCGGCCTGGTCGTGTTGCGGTGCATCCTGT-TCTGT-CTGGGTGTGGGTGGTGACC-GGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACTGGTCAGAGTGGCACCTGAGAAGGGTAGCAAGAAGACAAAAAAACGAAAACGCGACAAGGACATGTGGCGGCTGAAGAGGAGAGTACCACCACCGGCAATATCCCACCGACTGATCGACTGAGTGTTGAANGGACGCGTGACACTGACGGAAAGCGGCAACATCTTCANCANGCGCCNGCAGACCGNNGGGTTAAGGCATNGNGGAAGCCTAANCAAGCAGCATGCAGCAGCCGCAGGAATCTTCACCCAGTGTNCTGTCCCACCGGTNACAATTGGCGAGATCATCGACGAAGGAAGCAAAAATCCGGNAAANAACCGTCGGACCACGTGATCGGAANGGTACGCANGCGCTCANCACTCCACGGGGAAAGGACNCNTNNNANACATTGGTCNAAGTCCAGGATTAAGNTGGAAAAACATCNCCNTAACAGCCANAAAACGTTTAATTCGAGANNNGCCGGNTATACATTACCANNTNACCCCCAATTCACAGATTGGCAGACAACACAGTNGTACCCGNTGACGTGGNATCGCGNAAAAACACAACTANNTCNAGTNACAAATTGGAGCAAGCGNGCNNAAANATAACACCACCCACAAAATTTANNGGCACACAC] [+] EMBL BM587910 [CCGCCACTTTCAGGTTGTCAATGGGAAGAGTCCGTCC CGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGT ] [+] EMBL BM649189 [ CCGGTCCGTCC CGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATTGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCACCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGAGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGT ] [+] EMBL BM653407 [ CCGGTCCGTCC CGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTT ] [+] EMBL BM612975 [ acgCGTCCGCGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTTTGCTATTGAATCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGTGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAATACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCACCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGAGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGGCGGAAGCGGTAGCGGGAAAA ] [+] EMBL BM609104 [ cCGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGT GGCGGAAGCGGTAGCGGAAAAGCGAAAGCGCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATC GATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATCGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTAT CTGAGCATAGC GGC GGCCGGCT TTTTGG TGTTTAT TCTCGGCCTGGTCGTGTTGCGGTGCATCCTGT TCTGT CTGGGTGTGGGTGGTGACC GGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTT ] [+] EMBL AL932047 [ aatnGCCCGAGGTTAGTCTA AGATGCA CCGGAGCAGCTGTTTATCTGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATTCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATCGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATACTGAGCATAGCTGGCTGGCTGGCTTATTTTGGTTGTTTATATCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTATCTGTACT GGTGTGGGTGGTGACCTGGTGGAAAGCACCA TTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACTGGTCAGAGTGGCACCTGAGAAGGGTAGCAAGAAGACAAAAAAACGAAAACGCGACAAGGACATGTGGCGGCTGAAGAGGAGAGTACCACCACCGGCAATATCCCACCGACTGATCGACTGAGTGTTGAANGGACGCGTGACACTGACGGAAAGCGGCAACATCTTCANCANGCGCCNGCAGACCGNNGGGTTAAGGCATNGNGGAAGCCTAANCAAGCAGCATGCAGCAGCCGCAGGAATCTTCACCCAGTGTNCTGTCCCACCGGTNACAATTGGCGAGATCATCGACGAAGGAAGCAAAAATCCGGNAAANAACCGTCGGACCACGTGATCGGAANGGTACGCANGCGCTCANCACTCCACGGGGAAAGGACNCNTNNNANACATTGGTCNAAGTCCAGGATTAAGNTGGAAAAACATCNCCNTAACAGCCANAAAACGTTTAATTCGAGANNNGCCGGNTATACATTACCANNTNACCCCCAATTCACAGATTGGCAGACAACACAGTNGTACCCGNTGACGTGGNATCGCGNAAAAACACAACTANNTCNAGTNACAAATTGGAGCAAGCGNGCNNAAANATAACACCACCCACAAAATTTANNGGCACACAC] consensusID : consensus_9235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1362 fasta sequence [AATGGGAAGAGTCTGTCCCGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATTGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGCGGAAGCGGTAGCGGAAAAGCGAAAGCGCCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATC-GTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAGAGTGGCACCGAGAAGGGTAGTAAGAAGACGAAAAAACGAAAACGC-GACAAGGACAGTGGCGGCGAAGAGGAGAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGA---GGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGCAGCAGCAGCAGCAGCAGCCGCAGGAATCTTCATCAGTGTCCGTCCCACCGGTCACAATTGCCGAGTCGATCGACGAGGAGCAAAACTCCGGAACGCCGTCGGAAAGTGACTCGGAAGGCTCGCAGCGCTCCTCCACGGGGAAGGACTTTGAGATGGTCGAGCCGGATGAGGTGGATACCTCGTAAATCAGAACAAGTTAATCGACATGCGCGCGTTACATTTTCATATCACCCTCAATCCACGACTGCAGCAGTACTAGCTGCTTACCAGCTGAAATGGATCGGATAGCAACACCAATCATTCTCGTACCACATCTGCAAACCAAACCCTGCTAAAAAAAAAATAATAACA] [+] EMBL CNS08IOP [AATGGGAAGAGTCTGTCCCGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATTGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGCGGAAGCGGTAGCGGAAAAGCGAAAGCGCCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATCGGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTT ] [+] EMBL BM623012 [ ccGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGCGGAAGCGGTAGCGG ] [+] EMBL CNS08DHL [ AAGGCGGTGGCGGAAGCGGTAGCGGAAAAGCGAAAGCGCGAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATC GTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCCTCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAGAGTGGCACCGAGAAGGGTAGTAAGAAGACGAAAAAACGAAAACGC GACAAGGACAGTGGCGGCGAAGAGGAGAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGA GGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGCAGCAGCAGCAGCAGCAGCCGCAGGAATCTTCATCAGTGTCCGTCCCACCGGTCACAATTGCCGAGTCGATCGACGAGGAGCAAAACTCCGGAACGCCGTCGGAAAGTGACTCGGAAGGCTCGCAGCGCTCCTCCACGGGGAAGGACTTTGAGATGGTCGAGCCGGATGAGGTGGATACCTCGTAAATCAGAACAAGTTAATCG ] [+] EMBL BM642965 [ ccgGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATC GTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAGAGTGGCACCGAGAAGGGTAGCAAGAAGACGAAAAAGCGAAAACGC GACAAGGACAGTGGCGGCGAAGAGGAAAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGAGGTGGAAAGCGGCAAATCTTCACCTGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTA AGCAGCAGCAGCAGCAGCCGCAGGAATCTGTACCAGTGTCCGTCCCACCGGTCACAATTGCCGAGTCGATCGACGAGGAGCAAAACTCCGGAACACCGTCGGAAAGTGACTCGGAAGGCTCGCAGC ] [-] EMBL CNS08IOQ [ TCCCGATGCATAACTGGATTTTTGGCGAACTGCTGGTGGTGGGCGCGATC GTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTTTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAAAGTGGCGCCGAGAAGGGTAGTAAGAAGACGAAAAAACGAAAACGCGGACAAGGAAAGTGGCGGCGAAGAGGAGAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGA GGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGCAGCAGCAGCAGCAGCAGCCGCAGGAATCTTCATCAGTGTCCGTCCCACCGGTCACAATTGCCGAGTCGATCGACGAGGAGCAAAACTCCGGAACGCCGTCGGAAAGTGACTCGGAAGGCTCGCAGCGCTCCTCCACGGGGAAGGACTTTGAGATGGTCGAGCCGGATGAGGTGGATACCTCGTAAATCAGAACAAGTTAATCGACATGCGCGCGTTACATTTTCATATCACCCTCAATCCACGACTGCAGCAGTACTAGCTGCTTACCAGCTGAAATGGATCGGATAGCAACACCAATCATTCTCGTACCACATCTGCAAACCAAACCCTGCTAAAAAAAAAATAATAACA] [-] EMBL CNS08DHM [ TGA GGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGCAGCAGCAGCAGCAGCAGCCGCAGGAATTTTCATCAGTGTCCGTCC ] consensusID : consensus_9235#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGGAAGAGTCCGTCCCGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGA] [+] EMBL BM621175 [CCGCCCACGCGTCCGCCCACGCGTCCGGGGAAGAGTCCGTCCCGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGA] consensusID : consensus_9235#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [AGAATCCCCCGAGGTTNNTACACAAGTTTTTCCACCGCGCCCGAAAGGTCCCGGTCAGCTGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGTGTGACGGCCAGCTCGGCTAAGTGATGGCTCCAAACAAACTTGCTGACAAAGGATGGAACTGAGCAACCGACTGCGGAAATGTAGCCACGCTGGAGTGGCATGCAAGGCGGTGTGCTGNGAATGCGGTAGCTGGAAAATGCGAAAGCGCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATTCCGATGCATTACTTGGATCTTTGGCGCACTGCTGGTGGTGGGCTGCGATCTGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGTGTGTACTATCTTGAGCATAGCGGCTGGCCGGCTTTTTTGGTTGTTTATTCTCGGCCTGGTCCCTGTTGCCGGTGCATCCCTGGTTCTGTCTGGCTGTGGNTGGTGACCTGGTGGCACAANGCACCACTCTCTGGCTGCTAC] [+] EMBL AL932017 [AGAATCCCCCGAGGTTNNTACACAAGTTTTTCCACCGCGCCCGAAAGGTCCCGGTCAGCTGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGTGTGACGGCCAGCTCGGCTAAGTGATGGCTCCAAACAAACTTGCTGACAAAGGATGGAACTGAGCAACCGACTGCGGAAATGTAGCCACGCTGGAGTGGCATGCAAGGCGGTGTGCTGNGAATGCGGTAGCTGGAAAATGCGAAAGCGCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATTCCGATGCATTACTTGGATCTTTGGCGCACTGCTGGTGGTGGGCTGCGATCTGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGTGTGTACTATCTTGAGCATAGCGGCTGGCCGGCTTTTTTGGTTGTTTATTCTCGGCCTGGTCCCTGTTGCCGGTGCATCCCTGGTTCTGTCTGGCTGTGGNTGGTGACCTGGTGGCACAANGCACCACTCTCTGGCTGCTAC] consensusID : consensus_9235#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [ATCCCCCGAGTTNTGGCGCACTGCTGGTGGTGGGCGCGAACGTCATCTGTCTATTCCCGCTGTGGCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAGAGTGGCACCGAGAAGGGTAGTAAGAAGACGAAAAAACGAAAACGCGACAAGGACAGTGGCGGCGAAGAGGAGAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGAGGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGC] [+] EMBL AL932312 [ATCCCCCGAGTTNTGGCGCACTGCTGGTGGTGGGCGCGAACGTCATCTGTCTATTCCCGCTGTGGCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAGAGTGGCACCGAGAAGGGTAGTAAGAAGACGAAAAAACGAAAACGCGACAAGGACAGTGGCGGCGAAGAGGAGAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGAGGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9235#1 ------------------------------------------------------------ consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 CCGCCACTTTCAGGTTGTCAATGGGACCGGTCCGTCCCGTAAGTGGAGACGTGGAAAACA 60 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 ------------------------------------------------------------ consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 GCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTG 120 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 ------------------------------------------------------------ consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 TGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTC 180 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 ------------------------------------------------------------ consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 CTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTG 240 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 ----------------------------------------AATGGGAAGAGTCTGTCCCG 20 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 CCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAG 300 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 TAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCA 80 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 CTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGA 360 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 GCTATTGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTA 140 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 CCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGC 420 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 AACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAG 200 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 TTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTG 480 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 AGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCG 260 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 ATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCA 540 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 CAGAACAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGG 320 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 GCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGG 600 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 CCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACG 380 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 CCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACG 660 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 CGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGCGGAAGCGGTAGCGGAAAAGCGAA 440 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 CGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGCGGAAGCGGTAGCGGGAAAACGAA 720 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 AGCGCCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCG 500 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 --------------------------------------AGAATCCCCCGAGGTTNNTACA 22 consensus_9235#0 AGCGC-AAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCG 779 consensus_9235#2 ------------------------------CCGCCCACGCGTCCGCCCACGCGTCCGGGG 30 consensus_9235#1 TACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTG 560 consensus_9235#4 -------------------------------ATCCCCCGAGTTNTGGCGCACTGCTGGTG 29 consensus_9235#3 CAAGTTTTTCCACCGCGCCCGAAAGGTCCCGGTCAGCTGAG--CAGGAGCTGCGCGGGAA 80 consensus_9235#0 TACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTG 839 consensus_9235#2 AAGAGTCCGTCCCGTAAGTGGAGACGTGGAAAACAGCTGCC--CCCGTGGTGTAGGAAAA 88 * * * consensus_9235#1 GTGGGCGCGATCGTCATCTGTCTATTCCC----GCTGTGGCCACCGCTGCTGCGAAAGGG 616 consensus_9235#4 GTGGGCGCGAACGTCATCTGTCTATTCCC----GCTGTGGC-ACCGCTGCTGCGAAAGGG 84 consensus_9235#3 GAACAGCAAAAAGGCAGCCGCAGAGGCCT----TGTGTGACGGCCAGCTCGGCTAAGTGA 136 consensus_9235#0 GTGGGCGCGATCGTCATCTGTCTATTCCC----GCTGTGGCCACCGCTGCTGCGAAAGGG 895 consensus_9235#2 GTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGA 148 * ** * * ** **** ** * * consensus_9235#1 GGTGTACT---ATCTGAGCA--TAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTG 671 consensus_9235#4 GGTGTACT---ATCTGAGCA--TAGCGGCGGC-GGCTTTTTGGTGTTTATTCTCGGCCTG 138 consensus_9235#3 TGGCTCCA---AACAAACTTGCTGACAAAGGATGGAACTGAGCAACCGACTGCGGAAATG 193 consensus_9235#0 GGTGTACT---ATCTGAGCA--TAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTG 950 consensus_9235#2 ACAGTGAATAAACCTAAACGCGTCACGGTGGT-GCTTCCTTGCGAGTGAGTGTGTGTCGG 207 * * * * * * ** * * * * * consensus_9235#1 ---GTCGTGTTGCGGTG-CATCCTGTTCTGTCTGG-TGTGGGTG--GTGACCGGTG---- 720 consensus_9235#4 ---GTCGTGTTGCGGTG-CATCCTGTTCTGTCTGG-TGTGGGTG--GTGACCGGTG---- 187 consensus_9235#3 TA-GCCACGCTGGAGTGGCATGCAAGGCGGTGTGC-TGNGAATGCGGTAGCTGGAAAATG 251 consensus_9235#0 ---GTCGTGTTGCGGTG-CATCCTGTTCTGTCTGGGTGTGGGTG--GTGACCGGTG---- 1000 consensus_9235#2 CGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATA 267 * * * * ** ** * consensus_9235#1 -GAAAGCACCACTTCTGGCT------GCTACCGAATCTGACGGAAGATGTCGGCTTCTTT 773 consensus_9235#4 -GAAAGCACCACTTCTGGCT------GCTACCGAATCTGACGGAAGATGTCGGCTTCTTT 240 consensus_9235#3 CGAAAGCGCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAG 311 consensus_9235#0 -GAAAGCACCACTTCTGGCT------GCTACCGAATCTGACGGAAGATGTCGGCTT-TTT 1052 consensus_9235#2 CAGCGGTCCCGGAGGCGCAGA-ACAGGAGATTGAAAAAGCT-TCCAAGGATGAGTACAAG 325 * * * * * * * * * consensus_9235#1 GCCTCCTTCTGGCC--ACTGTACAATCATGAA----TACAAGGAC-GGTCAGAGTGGCAC 826 consensus_9235#4 GCCTCCTTCTGGCC--ACTGTACAATCATGAA----TACAAGGAC-GGTCAGAGTGGCAC 293 consensus_9235#3 GCGTACGTCTGGCTGTACGATCCGATTCCGATGCATTACTTGGAT-CTTTGGCGCACTGC 370 consensus_9235#0 GCCTCCTTCTGGCC--ACTGTACAATCATGAA----TACAAGGACTGGTCAGAGTGGCAC 1106 consensus_9235#2 GTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAA-TTTCTGAATCACAA 384 * **** * * ** * * * * consensus_9235#1 CGA-GAAGGGTAGTAAGAAGACGAAAAAACGAAAACGCGACAAGGACA-GTGGCGGCGAA 884 consensus_9235#4 CGA-GAAGGGTAGTAAGAAGACGAAAAAACGAAAACGCGACAAGGACA-GTGGCGGCGAA 351 consensus_9235#3 TGGTGGTGGGCTGCGATCTGTCATCTGTCTATTCCCGCTGTGGCCACC-GCTGCTGCGAA 429 consensus_9235#0 CTGAGAAGGGTAGCAAGAAGACAAAAAAACGAAAACGCGACAAGGACATGTGGCGGCTGA 1166 consensus_9235#2 TGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCA 444 * * * * ** * consensus_9235#1 GAG-GA-GAGTACCACCGCCGGCAATATCCCACCG--AC-GATCGACGAGGTGAAGGAG- 938 consensus_9235#4 GAG-GA-GAGTACCACCGCCGGCAATATCCCACCG--AC-GATCGACGAGGTGAAGGAG- 405 consensus_9235#3 AGG-GGTGTGTACTATCTTGAGCA-TAGCGGCTGG--CC-GGCTTTTTTGGTTGTTTAT- 483 consensus_9235#0 AGA-GGAGAGTACCACCACCGGCAATATCCCACCG--ACTGATCGACTGAGTGTTGAANG 1223 consensus_9235#2 GGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCT 504 * * *** * * * * consensus_9235#1 ----CGTGACACTGA-GGAAAGCGGCAAAT-CTTCACC-AGCGCCGGCAG-CCGAAGGGT 990 consensus_9235#4 ----CGTGACACTGA-GGAAAGCGGCAAAT-CTTCACC-AGCGCCGGCAG-CCGAAGGGT 457 consensus_9235#3 ----TCTCGGCCTGG-TCCCTGTTGCCGGTGCATCCCT-GGTTCTGTCTG-GCTGTGGNT 536 consensus_9235#0 GACGCGTGACACTGACGGAAAGCGGCAACATCTTCANCANGCGCCNGCAGACCGNNGGGT 1283 consensus_9235#2 GTACCACAAGTTTTT-CCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCG 563 * * * ** * * * * consensus_9235#1 TAAGGCATCGTGGAG--CTAAGCA-GCAGCAGCAGCAGCAGCCGCAGGAATCTTCATCAG 1047 consensus_9235#4 TAAGGCATCGTGGAG--CTAAGC------------------------------------- 478 consensus_9235#3 GGTGACCTGGTGGCA--CAANGCA-CCACTCTCTGGCTGCTAC----------------- 576 consensus_9235#0 TAAGGCATNGNGGAAGCCTAANCAAGCAGCATGCAGCAGCCGCAGGAATCTTCACCCAGT 1343 consensus_9235#2 GGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGA--------------------- 602 * * * consensus_9235#1 TGTCCGTCCCACCGGTCACAATTGCCGAGTCGATCGACGAGGAGCAAAACTCCGGAACGC 1107 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 GTNCTGTCCCACCGGTNACAATTGGCGAGATCATCGACGAAGGAAGCAAAAATCCGGNAA 1403 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 CGTCGGAAAGTGACTCGGAAGGCTCGCAGCGCTCCTCCACGGGGAAGGACTTTGAGATGG 1167 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 ANAACCGTCGGACCACGTGATCGGAANGGTACGCANGCGCTCANCACTCCACGGGGAAAG 1463 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 TCGAGCCGGATGAGGTGGATACCTCGTAAATCAGAACAAGTTAATCGACATGCGCGCGTT 1227 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 GACNCNTNNNANACATTGGTCNAAGTCCAGGATTAAGNTGGAAAAACATCNCCNTAACAG 1523 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 ACATTTTCATATCACCCTCAATCCACGACTGCAGCAGTACTAGCTGCTTACCAGCTGAAA 1287 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 CCANAAAACGTTTAATTCGAGANNNGCCGGNTATACATTACCANNTNACCCCCAATTCAC 1583 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 TGGATCGGATAGCAACACCAATCATTCTCGTACCACATCTGCAAACCAAACCCTGCTAAA 1347 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 AGATTGGCAGACAACACAGTNGTACCCGNTGACGTGGNATCGCGNAAAAACACAACTANN 1643 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 AAAAAAATAATAACA--------------------------------------------- 1362 consensus_9235#4 ------------------------------------------------------------ consensus_9235#3 ------------------------------------------------------------ consensus_9235#0 TCNAGTNACAAATTGGAGCAAGCGNGCNNAAANATAACACCACCCACAAAATTTANNGGC 1703 consensus_9235#2 ------------------------------------------------------------ consensus_9235#1 ------ consensus_9235#4 ------ consensus_9235#3 ------ consensus_9235#0 ACACAC 1709 consensus_9235#2 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||