These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1441 fasta sequence [CCGCCCACGCGTCCGCTGCGC-AGAAG-TATCGGTCGG-CGGCTGGGTGGGTGTGTGTATGTTGGTTTGTGGCGTGTCCTGCAGTTGCAGTGCCGTGCTTGTTGTAATTGTTGTTGACGAAAAGTGGACCAACCGAATCCATCTTCTTCCGCCCGACCCTGATCGCCGGCGGTGTGTCCCTTTCACCTGCACAAACGCTTTCCGCTATCGGCACACACTAGGTTGATATTGAACTTTCTCATTTAAAATAGATCCACATCCACAAGACGACATCGAGAATTCTCCGTCGCAGCCGCGGGCCACACACGGGTTTACCGAAGGAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGCTGAACTGC--CACCAGCAGCTCGTCGCGACCTGTACTCGCTTGGGGAGTGAGTGTTTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGG-ACGTAGTGGTGCGCGATCTGCTCGGGCCGGGCGGGGTACCGCC-GG-ACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGAGCGGATTCCAGCCGATGGACATTGCGTCGGCGATACGCGGTATACCGGAGGTGCCCGGGATGAAGTCGTGCATCGGAAACCTGGTGCGGCACGGGTTCGATGTGATCATCATAAGCGATTCCAACTCGGAGTTCATACGGCTGTGGAACGATTTCAACGACATCGGCTCGTACATACACAGCGTGTTCACAAATCCGGCCCGGTTCGATGGCAGCGGGCTGCTGGAGCTGCGCCCGTACCACTACCAAACGGAGTGCTCGCTCAGCTCGAAGAACCTTTGCAAGGGCAAGATAATGGAAGAGT-TCCTGCGCCGCCAGCACGACGAGCGGCAGGTCGATTACGAGAAGGTGTTCTACGCCGGGGACGGCAAGAACGACGTGTGTCCGATGTTGCGGCTCGGCAGCAATGGGTACGCCTGTGCCAGACGTGGCTACTCCTGCCATGATGCGCTGCAGGGTGCCATCGGGAAGCTGGAGCACCCGTACGTGGCCAAGGTACTGCAGTGGACGGATGGGCACGAGCTGAACGACCTTATATGGACTGAACTGGAGGACTGATCTTTACAGCGCCGTACTGTTTTCACCCTGCTCAGCACACCGGTTGCCGAAATGCTATTGCATGTGTGCCGGTGTGCTGTGGTTGGCATTTTTTACAGACTCCATAATGATGGTGAATATACTAC-ATTTTGTTTCATTTTTTTTTCCTAATAAAATACCGTTGCAAACGAAA] [+] EMBL BM652392 [CCGCCCACGCGTCCGCTGCGCAAGAAGCTATCGGTCGGTCGGCTGGGTGGGTGTGTGTATGTTGGTTTGTGGCGTGTCCTGCAGTCGCAGTGCCGTGCTTGTTGTAGTTGTTGTTGACGAAAAGTGGACCAACCGAATCCATCTTCTTCCGCCCGACCCTGATCGCCGGCGGTGTGTCCCTTTCACCTGCACAAACGCTTTCCGCTATCGGCACACACTAGGTTGATATTGAACTTTCTCATTTAAAATAGATCCACATCCACAAGACGACATCGAGAATTCTCCGTCGCAGCCGCGGGCCACACACGGGTTTACCGAAGGAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGCTGAACTGC TACCAGCAGCTCGTCGCGACCTGTACTCGCTTGGGGAGTGAGTGTTTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGGCACGTAGTGGTGCGTGATCTGCTCGGGCCGGGCGGAGTACCGCC GGAACGTGCAAAGCATACTGCGCTCCTGCGGCTGGAT ] [+] EMBL CNS08E4J [ CGC AGAAG TATCGGTCGG CGGCTGGGTGGGTGTGTGTATGTTGGTTTGTGGCGTGTCCTGCAGTTGCAGTGCCGTGCTTGTTGTAATTGTTGTTGACGAAAAGTGGACCAACCGAATCCATCTTCTTCCGCCCGACCCTGATCGCCGGCGGTGTGTCCCTTTCACCTGCACAAACGCTTTCCGCTATCGGCACACACTAGGTTGATATTGAACTTTCTCATTTAAAATAGATCCACATCCACAAGACGACATCGAGAATTCTCCGTCGCAGCCGCGGGCCACACACGGGTTTACCGAA GAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGCTGAACTGCCACACCACCAGCTCGTCGCGACCTGTACTCGCTTGGGGAGTGAGTGTTTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGG ACGTAGTGGTGCGCGATCTGCTCGGGGCAGGCGGGGTA CGCG GA ACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGAGCGGATTCCAGCCGATGGACATTGCGTCGGCGATACGCGGTATACCGGA GTGCCCGGGATGAAGTCGTGCATCGGAAACCTGGTGCGGCACGGGTTCGATGTGATCATCATAAGCGATTCCAACTCGGAGTTCATACGGCTGTGGAACGATTTCAACGACATCGGCTCGTACATACACAGCGTGTTCACAAATCCGGCCCGGTTCGATGGCAGCGGGCTGCTGGAGCTGCGCCCGTACCACTA ] [+] EMBL CNS08PJQ [ CTGGGTGGGTGTGTGTATGTTGGTTTGTGGCGTGTCCTGCAGTTGCAGTGCCGTGCTTGTTGTAATTGTTGTTGACGAAAAGTGGACCAACCGAATCCATCTTCTTCCGCCCGACCCTGATCGCCGGCGGTGTGTCCCTTTCACCTGCACAAACGCTTTCCGCTATCGGCACACACTAGGTTGATATTGAACTTTCTCATTTAAAATAGATCCACATCCACAAGACGACATCGAGAATTCTCCGTCGCAGCCGCGGGCCACACACGGGTTTACCGAA GAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGCTGAACTGCCACACCACCAGCTCGTCGCGACCTGTACTCGCTTGGGGAGTGAGTCTTTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGG ACGTAGTGGTGCGCGATCTGCTCGGGCCAGGCGGGGTACCGCCGGG ACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGAGCGGATTCCAGCCGATGGACATTGCGTCGGCGATACGCGGTAT ] [+] EMBL BM624102 [ ccgCACATCCACAAGACGACATCGAGAATTCTCCGTCGCAGCCGCGGGCCACACACGGGTTTACCGAAGGAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGTTGAAGTGC CACCAGCAGCTCATCGCGACCTGTACTCGCTTGGGGAGTGAGTGTTTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGG ACGTAGTGGTGCGCGATCTGCTCGGGCCGGGCGGGGTACCGCC GG ACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGGGCGGCTTCCAGCCGATGGACATTGCGTCGGCGATACGCGGCATACCGGAGGTGCCCGGGATGAAGTCGTGCATCGGCAACCTGGTGCGGCACGGGTTCGACGTGATCATCATAAGCGATTCCAACTCGGAGTTCATACGGCTGTGGAACGATTTCAACGACATCGGCTCGTACATACACAGCGTGTTCACAAATCCGGCCCG ] [+] EMBL BX628606 [ CACACGGGTTTACCGAAGGAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGTTGAAGTGC CACCAGCAGCTCATCGCGACCTGTACTCGCTTGGGGAGTGAGTGTTTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGG ACGTAGTGGTGCGCGATCTGCTCGGGCCGGGCGGGGTACCGCC GG ACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGGGCGGCTTCCAGCCGATGGACATTGCGTCGGCGATACGCGGCATACCGGAGGTGCCCGGGATGAAGTCGTGCAT ] [-] EMBL CNS08E4K [ CGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAAAACGG ACGTAGTGGTGCGCGATCTGCTCGGGCCAGGCGGGGTACCGCC GG ACGTGCAAAGCATACTGCGCT CTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGAGCGGATTCCAGCCGATGGACATTGCGTCGGCGATACGCGGTATACCGGAGGTGCCCGGGATGAAGTCGTGCATCGGAAACCTGGTGCGGCACGGGCCCCATGTGATCATCATAAGCGATTCCAACTCGGAGTTCATACGGCTGTGGAACGATTTCAACGACATCGGCTCGTACATACACAGCGTGTTCACAAATCCGGCCCGGTTCGATGGCAGCGGGCTGCTGGAG TGCGCCCGTACCACTACCAAACGGAGTGCTCGCTCAGCTCGAAGAACCTTTGCAAGGGCAAGATAATGGAAGAGT TCCTGCGCCGCCAGCACGACGAGCGGCAGGTCGATTACGAGAAGGTGTTCTACGCCGGGGACGGCAAGAACGACGTGTGTCCGATGTTGCGGCTCGGCAGCAATGGGTACGCCTGTGCCAGACGTGGCTACTCCTGCCATGATGCGCTGCAGGGTGCCATCGGGAAGCTGGAGCACCCGTACGTGGCCAAGGTACTGCAGTGGACGGATGGGCACGAGCTGAACGACCTTATATGGACTGAACTGGAGGACTGATCTTTACAGCGCCGTACTGTTTTCACCCTGCTCAGCACACCGGTTGCCGAAATGCTATTGCATGTGTGCCGGTGTGCTGTGGTTGGCATTTTTTACAGACTCCATAATGATGGTGAATATACTAC ATTTTGTTTCATTTTTTTTTCCTAATAA ] [+] EMBL BM580260 [ cCGCGGAC GCGTGGGCCGGGCGGGGTACCGCC GG ACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGGGCGGCTTCCAGCCGATGGACATTGCGTCGGCGATACGCGGCATACCGGAGGTGCCCGGGATGAAGTCGTGCATCGGCAACCTGGTGCGGCACGGGTTCGACGTGATCATCATAAGCGATTCCAACTCGGAGTTCATACGGCTGTGGAACGATTTCAACGACATCGGCTCGTACATACACAGCGTGTTCACAAATCCGGCCCGGTTCGATGGCAGCGGGCTGCTGGAGCTGCGCCCGTACCACTACCAGACGGAGTGCTCGCTCAGCTCGAAGAACCTTTGCAAGGGCAAGATAATGGAAGAGT TCCTGCGCCGGCAGCACGACGAGCGGCAGGTCGATTACGAGAAGGTGTTCTACGCCGGGGACGGCAAGAACGACGTGTGTCCGATGTTGCGGCTCGGCAGCAATGGGTACGCCTGTGCCAGACGTGGCTACTCCTGCCATGATGCGCTGC ] [-] EMBL CNS08PJR [ gaCTGCGCCCGTACCACTACCAAACGGAGTGCTCGCTCAGCTCGAAGAACCTTTGCAAGGGCAAGATAATGGAAGAGTGTCCTGCGCCGCCAGCACGACGAGCGGCAGGTCGATTACGAGAAGGTGTTCTACGCCGGGGACGGCAAGAACGACGTGTGTCCGATGTTGCGGCTCGGCAGCAATGGGTACGCCTGTGCCAGACGTGGCTACTCCTGCCATGATGCGCTGCAGGGTGCCATCGGGAAGCTGGAGCACCCGTACGTGGCCAAGGTACTGCAGTGGACGGATGGGCACGAGCTGAACGACCTTATATGGACTGAACTGGAGGACTGATCTTTACAGCGCCGTACTGTTTTCACCCTGCTCAGCACACCGGTTGCCGAAATGCTATTGCATGTGTGCCGGTGTGCTGTGGTTGGCATTTTTTACAGACTCCATAATGATGGTGAATATACTACTATTTTGTTTCATTTTTTTTTCCTAATAA ] [-] EMBL CNS09NSR [ TCTTTACAGCGCCGTACTGTTTTCCCCCTGCTCAGCACACCGGTTGCCGAAATGCTATTGCATGTGTGCCGGTGTGCTGTGGTTGGCATTTTTTACAGACTCCATAATGATGGTGAATATACTAC ATTTTGTTTCAATTTTTTTTCCTAATAAAATACCGTTGCAAACGAAA] consensusID : consensus_9410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [CCGCTGCTGCGCAAGAAGCTATCGGTCGGTCGGCTGGGTGGGTGTGTATCCACATCCACAAGACGACATCGAGAATTCTCCGTCGCAGCCGCGGGCCACACACGGGTTTACCGAAGGAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGCTGAACTGCCACACCACCAGCTCGTCGCGACCTGTACTCGCTTGGGGAGTGAGTGTTTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGGACGTAGTGGTGCGCGATCTGCTCGGGCCGGGCGGGGTACCGCCGGACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGAGCGGATTCCAGCCGATGGACATTGCGTCGGCGATACGCGGTATACCGGAGGTGCCCGGGATGAAGTCGTGCATCGGAAACCTG] [+] EMBL BM655349 [CCGCTGCTGCGCAAGAAGCTATCGGTCGGTCGGCTGGGTGGGTGTGTATCCACATCCACAAGACGACATCGAGAATTCTCCGTCGCAGCCGCGGGCCACACACGGGTTTACCGAAGGAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGCTGAACTGCCACACCACCAGCTCGTCGCGACCTGTACTCGCTTGGGGAGTGAGTGTTTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGGACGTAGTGGTGCGCGATCTGCTCGGGCCGGGCGGGGTACCGCCGGACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGAGCGGATTCCAGCCGATGGACATTGCGTCGGCGATACGCGGTATACCGGAGGTGCCCGGGATGAAGTCGTGCATCGGAAACCTG] consensusID : consensus_9410#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCGCCCACGCGTCCGAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGGACGTAGTGGTGCGCGATCTGCTCGGGCCGGGCGGGGTACCGCCGGACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGGGCGGCTTCCAGCCGATGGACATTGCGTCGGCGATACGCGGCATACCGGAGGTGCCCGGGATGAAGTCGTGCATCGGCAACCTGGTGCGGCACGGGTTCGACGTGATCATCATAAGCGATTCCAACTCGGAGTTCATACGGCTGTGGAACGATTTCAACGACATCGGCTCGTACATACACAGCGTGTTCACAAATCCGGCCCGGTTCGATGGCAGCGGGCTGCTGGAGCTGCGCCCGTACCACTACCAGACGGAGTGCTCGCTCAGCTCGAAGAACCTTTGCAAGGGCAAGATAATGGAAGAGTTCCTGCGCCGGCAGCACGACGAGCGGCAGGTCGATTACGAGAAGG] [+] EMBL BM643270 [CCGCCCACGCGTCCGAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGGACGTAGTGGTGCGCGATCTGCTCGGGCCGGGCGGGGTACCGCCGGACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGGGCGGCTTCCAGCCGATGGACATTGCGTCGGCGATACGCGGCATACCGGAGGTGCCCGGGATGAAGTCGTGCATCGGCAACCTGGTGCGGCACGGGTTCGACGTGATCATCATAAGCGATTCCAACTCGGAGTTCATACGGCTGTGGAACGATTTCAACGACATCGGCTCGTACATACACAGCGTGTTCACAAATCCGGCCCGGTTCGATGGCAGCGGGCTGCTGGAGCTGCGCCCGTACCACTACCAGACGGAGTGCTCGCTCAGCTCGAAGAACCTTTGCAAGGGCAAGATAATGGAAGAGTTCCTGCGCCGGCAGCACGACGAGCGGCAGGTCGATTACGAGAAGG] consensusID : consensus_9410#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 509 fasta sequence [CCCCGAGGTNAAGACGACATCGAGAATCTCCGTCGCAGCCGCGGGCCACACACGGGTTTACCGAAGGAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGTTGAAGTGCCACCAGCAGCTCATCGCGACCTGTACTCGCTTGGGGAGTGAGTGTTTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGGACGTAGTGGTGCGCGATCTGCTCGGGCCGGGCGCGGGTACCGCCGGACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGGGCGGCTTCCAGCCGATGGACATTGCGTCGGCGATACGCGGCATACCG] [+] EMBL AL932098 [CCCCGAGGTNAAGACGACATCGAGAATCTCCGTCGCAGCCGCGGGCCACACACGGGTTTACCGAAGGAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGTTGAAGTGCCACCAGCAGCTCATCGCGACCTGTACTCGCTTGGGGAGTGAGTGTTTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGGACGTAGTGGTGCGCGATCTGCTCGGGCCGGGCGCGGGTACCGCCGGACGTGCAAAGCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGGGCGGCTTCCAGCCGATGGACATTGCGTCGGCGATACGCGGCATACCG] [+] EMBL CNS09BCW [ TGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGTTGAAGTGCCACCAGCAGCTCATCGCGACCTGTACTCGCTTGGGGAGTGAGTGTTTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGACGCGGCA CCGCGTAAGGATGTTCTCCAGCAGTGGGCGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGGACGTATGGGTGCGCGATCTGCTCGGGCCGGGCG GGGTTCCGCCGGATGTGCAAAGCATACTGCGCTC ] consensusID : consensus_9410#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [CAGCAGATCGGCCCAGGGGCTTTAGTGACAGCAAGCGACGCGGCANCCGCGTAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGGGACGTAGTGGGTGCGCGATCTGCTCGATGGCCGGGCGGGGTACCAGCGGACGTGCAAAGCGAGTACTGCGGCTCCTGACGGCTGGAATCCCGGTACGATGTCAGGCGCGAGTTGTATCCGGGCGTGNGTGCCAACCA] [+] EMBL BX466404 [CAGCAGATCGGCCCAGGGGCTTTAGTGACAGCAAGCGACGCGGCANCCGCGTAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACAACACGGGACGTAGTGGGTGCGCGATCTGCTCGATGGCCGGGCGGGGTACCAGCGGACGTGCAAAGCGAGTACTGCGGCTCCTGACGGCTGGAATCCCGGTACGATGTCAGGCGCGAGTTGTATCCGGGCGTGNGTGCCAACCA] consensusID : consensus_9410#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [CCCTCATCGCCGGCGGTCTGTCCCTTTCACCTGCACAAACGCTTTCCGCTATCGGCACACACTAGGTTGATATTGAACTTTNNNNNNNNNNNNTAGATCCACATCCACAAGACGACATCGAGAATTCTCCGTCGCAGCCGCGGGCCACACACGGGTTACCGAAGAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCC] [+] EMBL AGA283120 [CCCTCATCGCCGGCGGTCTGTCCCTTTCACCTGCACAAACGCTTTCCGCTATCGGCACACACTAGGTTGATATTGAACTTTNNNNNNNNNNNNTAGATCCACATCCACAAGACGACATCGAGAATTCTCCGTCGCAGCCGCGGGCCACACACGGGTTACCGAAGAGATGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCC] consensusID : consensus_9410#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence [TGTGGCGTGTCTGCAGTCGCAGTGCCGTGCTTGTTGTAATTGTTGTTGACGAAAAGTGGACCAACCGAATCCATCTTCTTCCGCACGACCCTGATCGCCCGGCGGATCCACATCCACAAGACGACATCGAGAA] [+] EMBL CNS09NSQ [TGTGGCGTGTCTGCAGTCGCAGTGCCGTGCTTGTTGTAATTGTTGTTGACGAAAAGTGGACCAACCGAATCCATCTTCTTCCGCACGACCCTGATCGCCCGGCGGATCCACATCCACAAGACGACATCGAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 ------------------------------------------------------------ consensus_9410#1 CCGCTGCTGCGCAAGAAGCTATCGGTCGGTCGGCTGGGTGGGTGTGTATCCACATCCACA 60 consensus_9410#3 -------------------------------------------------CCCCGAGGTNA 11 consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 ------------------------------------------------------------ consensus_9410#1 AGACGACATCGAGAATTCTCCGTCGCAGCCGCGGGCCACACACGGGTTTACCGAAGGAGA 120 consensus_9410#3 AGACGACATCGAGAAT-CTCCGTCGCAGCCGCGGGCCACACACGGGTTTACCGAAGGAGA 70 consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 ------CCGCCCACGCGTCCGCTGCGCAGAAGTATCGGTCGGCGGCTGGGTGGGTGTGTG 54 consensus_9410#1 TGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTT 180 consensus_9410#3 TGTTCTGCAGCATCGGCAAAGCGTCCGTCGGTCCAACTTTACCATTCATGAATGCAGTTT 130 consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 TATGTTGGTTTGTGGCGTGTCCTGCAGTTGCAGTGCCGTGCTTGTTGTAATTGTTGTTGA 114 consensus_9410#1 CGGGCTGAACTGCCACACCACCAGCTCGTCGCGACCTGTACTCGCTTGGGGAGTGAGTGT 240 consensus_9410#3 CGGGTTGAAGTGCCA--CCAGCAGCTCATCGCGACCTGTACTCGCTTGGGGAGTGAGTGT 188 consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ---------------------------------------CCCTCATCGCCGGCGGTCTGT 21 consensus_9410#6 ------------------------------TGTGGCGTGTCTGCAGTCGCAGTGCCGTGC 30 consensus_9410#0 CGAAAAGTGGACCAACCGAATCCATCTTCTTCCGCCCGACCCTGATCGCCGGCGGTGTGT 174 consensus_9410#1 TTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGAC 300 consensus_9410#3 TTCTATTCAGTGGTTCCGTGGCACACAAACCAAACACGGCAAACAGTGACAGCAAGCGAC 248 consensus_9410#2 --------------------------CCGCCCACGCGTCCGAACAGTGACAGCAAGCGAC 34 consensus_9410#4 ------------------CAGCAGATCGGCCCAGGGGCTT---TAGTGACAGCAAGCGAC 39 * * * consensus_9410#5 CCCTTTCACCTGC-ACAAACGCTTTCCGCTATCGGCACACACT--AGGTTGATATTGAAC 78 consensus_9410#6 TTGTTGTAATTGTTGTTGACGAAAAGTGG-ACCAACCGAATCC--ATCTTCTTCCGCACG 87 consensus_9410#0 CCCTTTCACCTGC-ACAAACGCTTTCCGCTATCGGCACACACT--AGGTTGATATTGAAC 231 consensus_9410#1 GCGGCAGCCGCGT-AAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTG 359 consensus_9410#3 GCGGCAGCCGCGT-AAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTG 307 consensus_9410#2 GCGGCAGCCGCGT-AAGGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTG 93 consensus_9410#4 GCGGCANCCGCGT-A-GGATGTTCTCCAGCAGTGGACGGCTGCTGAAGCGGCTGGCCGTG 97 * * * * * * consensus_9410#5 TTTNNNNNNNNNNNNTAGATCCACATCCACAAGACGACATCGAGAAT-TCTCCGTCGCAG 137 consensus_9410#6 ACCCTGATCGCCCGGCGGATCCACATCCACAAGACGACATCGAGAA-------------- 133 consensus_9410#0 TTTCTCATT-TAAAATAGATCCACATCCACAAGACGACATCGAGAAT-TCTCCGTCGCAG 289 consensus_9410#1 CTGGATTTCGATCACACCGTCTGCGAACACAACACGG-ACGTAGTGG-TGCGCGATCTGC 417 consensus_9410#3 CTGGATTTCGATCACACCGTCTGCGAACACAACACGG-ACGTAGTGG-TGCGCGATCTGC 365 consensus_9410#2 CTGGATTTCGATCACACCGTCTGCGAACACAACACGG-ACGTAGTGG-TGCGCGATCTGC 151 consensus_9410#4 CTGGATTTCGATCACACCGTCTGCGAACACAACACGGGACGTAGTGGGTGCGCGATCTGC 157 ** * ***** *** * ** consensus_9410#5 CCGCGGGCCACACACGGGTTACC--GAAGAGATGTTCTGCAGCATCGGCAAAGCGTCCGT 195 consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 CCGCGGGCCACACACGGGTTTACCGAAGGAGATGTTCTGCAGCATCGGCAAAGCGTCCGT 349 consensus_9410#1 TCG--GGCCGGGCG-GGGTACCGCCGGACGTGCAAAGCA--TACTGCG-CTCCTG-CGGC 470 consensus_9410#3 TCG--GGCCGGGCGCGGGTACCGCCGGACGTGCAAAGCA--TACTGCG-CTCCTG-CGGC 419 consensus_9410#2 TCG--GGCCGGGCG-GGGTACCGCCGGACGTGCAAAGCA--TACTGCG-CTCCTG-CGGC 204 consensus_9410#4 TCGATGGCCGGGCG-GGGTACCAGCGGACGTGCAAAGCGAGTACTGCGGCTCCTGACGGC 216 consensus_9410#5 CGGTCC------------------------------------------------------ 201 consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 CGGTCCAACTTTACCATTCATGAATGCAGTTTCGGGCTGAACTGCCACCAGCAGCTCGTC 409 consensus_9410#1 TGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGAGCG--GATTCCAGCCGA 528 consensus_9410#3 TGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGGGCG--GCTTCCAGCCGA 477 consensus_9410#2 TGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACCAGGGCG--GCTTCCAGCCGA 262 consensus_9410#4 TGGAATCCCGGTACG----ATGTCAGGCGCGAGTTGTATCCGGGCGTGNGTGCCAACCA- 271 consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 GCGACCTGTACTCGCTTGGGGAGTGAGTGTTTCTATTCAGTGGTTCCGTGGCACACAAAC 469 consensus_9410#1 TGGACATTGCGTCGGCGATACGCGGTATACCGGAGGTGCCCGGGATGAAGTCGTGCATCG 588 consensus_9410#3 TGGACATTGCGTCGGCGATACGCGGCATACCG---------------------------- 509 consensus_9410#2 TGGACATTGCGTCGGCGATACGCGGCATACCGGAGGTGCCCGGGATGAAGTCGTGCATCG 322 consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 CAAACACGGCAAACAGTGACAGCAAGCGACGCGGCAGCCGCGTAAGGATGTTCTCCAGCA 529 consensus_9410#1 GAAACCTG---------------------------------------------------- 596 consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 GCAACCTGGTGCGGCACGGGTTCGACGTGATCATCATAAGCGATTCCAACTCGGAGTTCA 382 consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 GTGGACGGCTGCTGAAGCGGCTGGCCGTGCTGGATTTCGATCACACCGTCTGCGAACACA 589 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 TACGGCTGTGGAACGATTTCAACGACATCGGCTCGTACATACACAGCGTGTTCACAAATC 442 consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 ACACGGACGTAGTGGTGCGCGATCTGCTCGGGCCGGGCGGGGTACCGCCGGACGTGCAAA 649 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 CGGCCCGGTTCGATGGCAGCGGGCTGCTGGAGCTGCGCCCGTACCACTACCAGACGGAGT 502 consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 GCATACTGCGCTCCTGCGGCTGGATCCCGTACATGCAGCGCGTCTTCCGGCTGCTGCACC 709 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 GCTCGCTCAGCTCGAAGAACCTTTGCAAGGGCAAGATAATGGAAGAGTTCCTGCGCCGGC 562 consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 AGAGCGGATTCCAGCCGATGGACATTGCGTCGGCGATACGCGGTATACCGGAGGTGCCCG 769 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 AGCACGACGAGCGGCAGGTCGATTACGAGAAGG--------------------------- 595 consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 GGATGAAGTCGTGCATCGGAAACCTGGTGCGGCACGGGTTCGATGTGATCATCATAAGCG 829 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 ATTCCAACTCGGAGTTCATACGGCTGTGGAACGATTTCAACGACATCGGCTCGTACATAC 889 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 ACAGCGTGTTCACAAATCCGGCCCGGTTCGATGGCAGCGGGCTGCTGGAGCTGCGCCCGT 949 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 ACCACTACCAAACGGAGTGCTCGCTCAGCTCGAAGAACCTTTGCAAGGGCAAGATAATGG 1009 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 AAGAGTTCCTGCGCCGCCAGCACGACGAGCGGCAGGTCGATTACGAGAAGGTGTTCTACG 1069 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 CCGGGGACGGCAAGAACGACGTGTGTCCGATGTTGCGGCTCGGCAGCAATGGGTACGCCT 1129 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 GTGCCAGACGTGGCTACTCCTGCCATGATGCGCTGCAGGGTGCCATCGGGAAGCTGGAGC 1189 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 ACCCGTACGTGGCCAAGGTACTGCAGTGGACGGATGGGCACGAGCTGAACGACCTTATAT 1249 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 GGACTGAACTGGAGGACTGATCTTTACAGCGCCGTACTGTTTTCACCCTGCTCAGCACAC 1309 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 CGGTTGCCGAAATGCTATTGCATGTGTGCCGGTGTGCTGTGGTTGGCATTTTTTACAGAC 1369 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------------------------------------------------------ consensus_9410#6 ------------------------------------------------------------ consensus_9410#0 TCCATAATGATGGTGAATATACTACATTTTGTTTCATTTTTTTTTCCTAATAAAATACCG 1429 consensus_9410#1 ------------------------------------------------------------ consensus_9410#3 ------------------------------------------------------------ consensus_9410#2 ------------------------------------------------------------ consensus_9410#4 ------------------------------------------------------------ consensus_9410#5 ------------ consensus_9410#6 ------------ consensus_9410#0 TTGCAAACGAAA 1441 consensus_9410#1 ------------ consensus_9410#3 ------------ consensus_9410#2 ------------ consensus_9410#4 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||