Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 9431 cluster # 9431       Sequences # 17       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9431#0 length = 1073 sequences # 2  
consensus_9431#1 length = 890 sequences # 12  
consensus_9431#2 length = 678 sequences # 3  

consensusID : consensus_9431#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1073
fasta sequence
                              [CCGCGGACGCGTGGGTTTTTTTTGCTTGCCAATTCCCATTTCTTTTCACTTTTTTGACTATTATTTAGCGTTAAAATATTCCAAATAAAATAACCAAAGTTGTGCAATGTTTTCAGAAGTACGTTAAGCGCTTTCTGCACGCAACTTCGTGCACTTGTCATTGAAGAATTGCATCATCGTGGGTAAAGAATCAGGCACCGAATTAGACCGGTGGTGGGGTGGTGAAGTCAGTCCTATTTTTAGCTTCACTTTCTTCCACTAATCATTGGAAATCCCC---GGTT--TTTGCTAAACCACCACCAGCTGAAGCCGATACAGTGACATTTATAGAAAAAAGTGGAGTTGCTGCTAGAACATCGATGGCTTCGTTTGTAGCAAAAGTTGTGACACGGTGCGAAGAGGCACTAGAAACTAAACA-TTCAATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTT-TACCATCTGATGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGCCCAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGGCCCGGCTACCGGACGAGCTGGCCGATCTGCACTCCGCTGGAGATGCTGGACATTTCGCACAACTCCTTCATCACACTGCCCGCGTCGTGTTCAAGATGCCCAAGCTGCGCGAACTGAAGGCCAACAACAATGGCATCATCGACATCGACCGGGACGAGATCATTGCGTCGATCGCTCGAGCTGGTCGACCTGCGGNACAATCCGTCACGCCGATGTGCCACGATCTGCTCAAGCACGCCGTACCTCTCCTTCGGACTCGCAAGCCCCTGGCTNCCCGCAACACCGGGGCTGCAACGGGCACGNGATTGGGCANAAGAACTNCTGNACCGNGGCAANACATGCTTGAANACTGAACCCCCCGCGCTGCGCCCCGCGCCCCGGCACACGCGCTANACACGACCCCCCGACGCACCCAGCCTGCNCTCCCTAACACCCTGCCCTATCNANACTCAATATCACCCAANCTGGCGCACTANACAACGN]

[+] EMBL BM580777             [CCGCGGACGCGTGGGTTTTTTTTGCTTGCCAATTCCCATTTCTTTTCACTTTTTTGACTATTATTTAGCGTTAAAATATTCCAAATAAAATAACCAAAGTTGTGCAATGTTTTCAGAAGTACGTTAAGCGCTTTCTGCACGCAACTTCGTGCACTTGTCATTGAAGAATTGCATCATCGTGGGTAAAGAATCAGGCACCGAATTAGACCGGTGGTGGGGTGGTGAAGTCAGTCCTATTTTTAGCTTCACTTTCTTCCACTAATCATTGGAAATCCCC   GGTT  TTTGCTAAACCACCACCAGCTGAAGCCGATACAGTGACATTTATAGAAAAAAGTGGAGTTGCTGCTAGAACATCGATGGCTTCGTTTGTAGCAAAAGTTGTGACACGGTGCGAAGAGGCACTAGAAACTAAACA TTCAATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTT TACCATCTGATGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGCCCAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGGCCCGGCTACCGGACGAGCTGGCCGATCTGCACTCCGCTGGAGATGCTGGACATTTCGCACAACTCCTTCATCACACT                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AL694895             [                                                                                                                                                                                                                                                                         ggcagAATCCCCCGNGGTTTNTTTGCTAAACCACCACCAGCTGAAGCCGATACAGTGACATTTATAGAAAAAAGTGGAGTTGCTGCTAGAACATCGATGGCTTCGTTTGTAGCAAAAGTTGTGACACGGTGCGAAGAGGCACTAGAAACTAAACATTTAAATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTNTACCATCTGATGAGACATCCCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGCCCAAATTCGCCGTCAAGTTTAG CTCATCACAGATCTCAA CTGTCCCACAACCAGATGGCCCGGCTACCGGACGAGCTGGCCGATCTGCACT CGCTGGAGATGCTGGACATTTCGCACAAATCCTTCATCACACTGCCCGCGTCGTGTTCAAGATGCCCAAGCTGCGCGAACTGAAGGCCAACAACAATGGCATCATCGACATCGACCGGGACGAGATCATTGCGTCGATCGCTCGAGCTGGTCGACCTGCGGNACAATCCGTCACGCCGATGTGCCACGATCTGCTCAAGCACGCCGTACCTCTCCTTCGGACTCGCAAGCCCCTGGCTNCCCGCAACACCGGGGCTGCAACGGGCACGNGATTGGGCANAAGAACTNCTGNACCGNGGCAANACATGCTTGAANACTGAACCCCCCGCGCTGCGCCCCGCGCCCCGGCACACGCGCTANACACGACCCCCCGACGCACCCAGCCTGCNCTCCCTAACACCCTGCCCTATCNANACTCAATATCACCCAANCTGGCGCACTANACAACGN]


>consensus_9431#0 CCGCGGACGCGTGGGTTTTTTTTGCTTGCCAATTCCCATTTCTTTTCACTTTTTTGACTA TTATTTAGCGTTAAAATATTCCAAATAAAATAACCAAAGTTGTGCAATGTTTTCAGAAGT ACGTTAAGCGCTTTCTGCACGCAACTTCGTGCACTTGTCATTGAAGAATTGCATCATCGT GGGTAAAGAATCAGGCACCGAATTAGACCGGTGGTGGGGTGGTGAAGTCAGTCCTATTTT TAGCTTCACTTTCTTCCACTAATCATTGGAAATCCCCGGTTTTTGCTAAACCACCACCAG CTGAAGCCGATACAGTGACATTTATAGAAAAAAGTGGAGTTGCTGCTAGAACATCGATGG CTTCGTTTGTAGCAAAAGTTGTGACACGGTGCGAAGAGGCACTAGAAACTAAACATTCAA TCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTTACCATCTGATGAGACATAC CGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGCCCAAATTCGC CGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGGCCCGGCTACC GGACGAGCTGGCCGATCTGCACTCCGCTGGAGATGCTGGACATTTCGCACAACTCCTTCA TCACACTGCCCGCGTCGTGTTCAAGATGCCCAAGCTGCGCGAACTGAAGGCCAACAACAA TGGCATCATCGACATCGACCGGGACGAGATCATTGCGTCGATCGCTCGAGCTGGTCGACC TGCGGNACAATCCGTCACGCCGATGTGCCACGATCTGCTCAAGCACGCCGTACCTCTCCT TCGGACTCGCAAGCCCCTGGCTNCCCGCAACACCGGGGCTGCAACGGGCACGNGATTGGG CANAAGAACTNCTGNACCGNGGCAANACATGCTTGAANACTGAACCCCCCGCGCTGCGCC CCGCGCCCCGGCACACGCGCTANACACGACCCCCCGACGCACCCAGCCTGCNCTCCCTAA CACCCTGCCCTATCNANACTCAATATCACCCAANCTGGCGCACTANACAACGN



consensusID : consensus_9431#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 890
fasta sequence
                              [CGACCCCCGCCGGTGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTACTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGTCAAAGCAGAGCGCAAACCTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAGCT--TAGCGTCTTCGATTGAATATTACAAAGTGCAGTTACCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCCCTTAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAGAATAACAACAACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGC-GGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACAACAATCTGGATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTTACCATCTGATGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGCCCAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGGCCCGGCTACCGGACGAGCTGGCCGATCTGCACTCGCTGGAGATGCTGGACAT]

[+] EMBL BM647523             [CGACCCACGCGTCCGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTACTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGTCAAAGCAGAGCGCAAACCTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAGCT  TAGCGTCTTCGATTGAATATTACAAAGTGCAGTTACCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCCCTGAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAGAATAACAACAACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGC GGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACAACAATCTGGATCTCTCGGAGTG                                                                                                                                                                                                                  ]
[+] EMBL BM656010             [     CCGGACGGTGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTACTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGTCAAAGCAGAGCGCAAACCTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAGCT  TAGCGTCTTCGATTGAATATTACAAAGTGCAGTTACCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCCCTGAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM608606             [     CCGGACGGTGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTACTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGTCAAAGCAGAGCGCAAACCTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAGCT  TAGCGTCTTCGATTGAATATTACAAAGTGCAGTTACCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCCCTGAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAGAATAACAACAACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGC GGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACAACAATCTGGATCTCTCGGAGT                                                                                                                                                                                                                   ]
[+] EMBL BM623423             [     CCGGACGGTGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTACTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGTCTAAGCAGAGCGCAAACCTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAGCT  TAGCGTCTTCGATTGAATATTACAAAGTGCAGTTACCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGGGCTTTTGCTTTTCCCTGAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAGAATAACAACAACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACGACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGC G                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM613452             [      CCG CGGTGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTACTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGTCAAAGCAGAGCGCAAACGTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAACTGCGAGCGTCTTCGATTGAATATTACAAAGTGCAGTTGCCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCCCTTAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAGAAT      AACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGgcc                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM619154             [      CCG CGGTGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTACTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGTCAAAGCAGAGCGCAAACCTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAGCT  TATCGTCTTCGATTGAATATTACAAAGTGCAGTTACCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM622143             [         CCGGTGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTACTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGTCAAAGCAGAGCGCAAACCTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAGCT  TAGCGTCTTCGATTGAATATTACAAAGTGCAGTTACCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCCCTGAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAGAATAACAACAACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGC GGCATCATCCGGGTCGTGGAG                                                                                                                                                                                                                                                                 ]
[+] EMBL BM657025             [        ccgGGTGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTACTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGTC AAGCAGAGCGCAAACGTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAACTGCGAGCGTCTTCGATTGAATATTACAAAGTGCAGTTGCCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCCCTTAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAGAAT      AACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGC GGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGA                                                                                                                                                                                                                                                 ]
[+] EMBL BM619175             [        ccgGGTGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTACTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGTCAAAGCAGAGCGCAAACGTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAACTGCGAGCGTCTTCGATTGAATATTACAAAGTGCAGTTGCCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCCCTTAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAGAAT      AACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGC GGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGG                                                                                                                                                                                                                                              ]
[+] EMBL BM655929             [                ccgGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTACTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGTCAAAGCAGAGCGCAAACGTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAACTGCGAGCGTCTTCGATTGAATATTACAAAGTGCAGTTGCCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCCCTTAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAGAAT      AACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGCGGGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACAACAATCTGGATCTCTCGGAGTGCGAGC                                                                                                                                                                                                             ]
[+] EMBL BM626209             [                                                                                                                                                                                   ccgCTTCGATTGAATATTACAAAGTGCAGTTGCCAAACAGTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCCCTTAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAGAAT      AACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGC GGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACAACAATCTGGATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTTACCATCTGATGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGCCCAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGGCCCGGCTACCGGACGAGCTGGCCGATCTGCACTCGCTGGAGATGCTGGACAT]
[+] EMBL BM624807             [                                                                                                                                                                                          cATTGAATATTACAAAGGGCAGGTGCCAAACATTGCTCCAAACGGCAACAAAGTGCATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGACAAGGAGCGATAATAAGCGAATAGACAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAATGCTTTTGCTTTTCCCTTAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGGCCCCCAACGCGTTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAGAATAACAACAACAACAAC     C ACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGGTGACGCAGATGGGCGCCACAATTAACTTCCCGAAGGTGGCGGGCCGC GGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGG                                                                                                                                                                                                                                              ]


>consensus_9431#1 CGACCCCCGCCGGTGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTA CTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGT CAAAGCAGAGCGCAAACCTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAGCTTAGCGT CTTCGATTGAATATTACAAAGTGCAGTTACCAAACAGTGCTCCAAACGGCAACAAAGTGC ATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGA CAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCC CTTAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGG CCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAG AATAACAACAACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAAC CATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAG GTGGCGGGCCGCGGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACAAC AATCTGGATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTTACCATCTGATG AGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGCCC AAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGGCC CGGCTACCGGACGAGCTGGCCGATCTGCACTCGCTGGAGATGCTGGACAT



consensusID : consensus_9431#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 678
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGCAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGCGGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACAACAATCTGGATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTTACCATCTGATGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGCCCAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGGCCCGGCTACCGGACGAGCTGGCCGATCTGCACTCGCTGGAGATGCTGGACATTTCGCACAACTCCTTCATCACACTGCCCGCCGTCGTGTTCAAGATGCCCAAGCTGCGCGAACTGAAGGCCAACAACAATGCCATCATCGACATCGACC-GGGACGAGATCATTGCGTCCGACTCGCTCGAGCTGGTCGACCTGCGGCACAATCCGCTCACGCCGATGTGCCACGATCTGCTCAAGCACGCCGTCCTCTCCTTCCGGATCGAGCTGTCCGAGCGGGTGAAGGAGGATTGGGAAGATTTGACGGAATGTGA]

[+] EMBL BM627913             [CCGCCCACGCGTCCGCCCACGCGTCCGCAACAACAACGGTGGGGGAAATGGAGGCAACAACAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGCGGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACAACAATCTGGATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTTACCATCTGATGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGCCCAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGGCCCGGCTACCGGACGAGCTGGCCGATCTGCACTCGCTGGAGATGCTGGACATTTCGCACAACTCCTTCATCACACTGCCCGCCGTCGTGTTCAAGATGCCCAAGCTGCGCGAACTGAAGGCCAACAACAATGCCATCATCGACATCGACC GGGACGAGATCATTGCGTCCGACTCGCTCGAGCTGGTCGACCTGCGGCACAATCCGCTCACGCCGATGTGCCACGATCTGCTCAAGCACGCCGTCCTCTCCTTCCGGATCGAGCTGTCCGAGCGGGTGAAGGAGGATTGGGAAGATTTGACGGAATGTGA]
[+] EMBL BM651346             [                                                                                           CGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAAGGTGGCGGGCCGCGGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACAACAATCTGGATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTGTACCATCTGATGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTTATCACAAAGATATCGCCAAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGGCCCGGCTACCGGACGAGCTGGCCGATCTGCACTCGCTGGAGATGCTGGACATTTCGCACAACTCCTTCATCACACTGCCCGCCGTCGTGTTCAAGATGCCCAAGCTGCGCGAACTGAAGGCCAACAACAATGCCATCATCGACATCGACC GGGACGAGATCATTGCGTCCGACTCGCTCGAGCTGGTCGACCTGCGGCACAATCCGCTCACGCCGATGTGCCACGATCTGCTCAAGCACGCCGTC                                                                 ]
[+] EMBL BM619123             [                                                                                                                                     cCGGGCCGCGGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACAACAATCTGGATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTTACCATCTGATGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGCCCAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGGCCCGGCTACCGGACGAGCTGGCCGATCTGCACTCGCTGGAGATGCTGGACATTTCGCACAACTCCTTCATCACACTGCCCGCCGTCGTGTTCAAGATGCCCAAGCTGCGCGAACTGAAGGGCAACAACAATGCCATCATCGACATCGACCGGGGACGAGATCATTGCGTCCGACTCGCTCGAGCTGGTCGACCTGCGGCA                                                                                                               ]


>consensus_9431#2 CCGCCCACGCGTCCGCCCACGCGTCCGCAACAACAACGGTGGGGGAAATGGAGGCAACAA CAACAACAACCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAA CTTCCCGAAGGTGGCGGGCCGCGGCATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAA GGAGAACAACAATCTGGATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTTA CCATCTGATGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAA GATATCGCCCAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAA CCAGATGGCCCGGCTACCGGACGAGCTGGCCGATCTGCACTCGCTGGAGATGCTGGACAT TTCGCACAACTCCTTCATCACACTGCCCGCCGTCGTGTTCAAGATGCCCAAGCTGCGCGA ACTGAAGGCCAACAACAATGCCATCATCGACATCGACCGGGACGAGATCATTGCGTCCGA CTCGCTCGAGCTGGTCGACCTGCGGCACAATCCGCTCACGCCGATGTGCCACGATCTGCT CAAGCACGCCGTCCTCTCCTTCCGGATCGAGCTGTCCGAGCGGGTGAAGGAGGATTGGGA AGATTTGACGGAATGTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9431#0      ------------------------------------------------------------
consensus_9431#2      ------------------------------------------------------------
consensus_9431#1      CGACCCCCGCCGGTGGAACGGTGCACATATCGGTTTGTGCAGTGCCTGCAACTATACTTA 60
                                                                                  

consensus_9431#0      ------------------------------------------------------------
consensus_9431#2      ------------------------------------------------------------
consensus_9431#1      CTATACCCTAACACCCTTGCCACTTCTTCGCGACAAAGAGCACCAGAGCTAGCGTGTCGT 120
                                                                                  

consensus_9431#0      ------------------------------------------------------------
consensus_9431#2      ------------------------------------------------------------
consensus_9431#1      CAAAGCAGAGCGCAAACCTCGCTTGGTGTGGGCTCCTTTCTAAAGCGTGTAGCTTAGCGT 180
                                                                                  

consensus_9431#0      ------------------------------------------CCGCGGACGCGTGGGTTT 18
consensus_9431#2      ------------------------------------------------------------
consensus_9431#1      CTTCGATTGAATATTACAAAGTGCAGTTACCAAACAGTGCTCCAAACGGCAACAAAGTGC 240
                                                                                  

consensus_9431#0      TTTTTGCTTGCCAATTCCCATTTCTTTTCACTTTTTT--GACTATTATTTAGCGTTAAAA 76
consensus_9431#2      ------------------------------------------------------------
consensus_9431#1      ATCTGCAGTGATTCTTCTGCTCTGAGTTGATCTGAGAAGGAGCGATAATAAGCGAAGAGA 300
                                                                                  

consensus_9431#0      TAT-TCCAAATAAAATAACCAAAGTTGTGCAATGTTTTCAGAAGTACGTTAAGCGCTTTC 135
consensus_9431#2      ------------------------------------------------------------
consensus_9431#1      CAAATACAAGCTTTTTGGGCTGCTGTGTGAACTGTGCGAAATTAGTGCTTTTGCTTTTCC 360
                                                                                  

consensus_9431#0      TGCACGCAACTTCGTGCACTTGTCATTGAAGAATTGCATCATCGTGGGTAAAGAATCAGG 195
consensus_9431#2      ------------------------------------------------------------
consensus_9431#1      CTTAACAAATCAAGTGCAAGCTTTACCACCTCGCAGCATCTCTCTACTCCAAAGATGAGG 420
                                                                                  

consensus_9431#0      CACCGAAT-TAGACCGGTGGTGGGGTGGT-------GAAGTCAGTCCT-ATTTTTAGCT- 245
consensus_9431#2      ----------------------------------------CCGCCCAC-GCGTCCGCCC- 18
consensus_9431#1      CCCCCAACGCATTTCGGTAATGATATTACCAACACCGAAGCGAACGGTGATGATCAGCAG 480
                                                                               *  

consensus_9431#0      --------TCACTTTCTTC-CACTAATCATTGGAAATCCCCGGTTTTTGCTAAACCACCA 296
consensus_9431#2      --------ACGCGTCCGCAACAACAACGGTGGGGGAAATGGAGGCAACAACAA-CAACAA 69
consensus_9431#1      AATAACAACAACAACAACAACAACAACGGTGGGGGAAATGGAGGCAACAACAA-CAACAA 539
                                 *        **  **   * **  *      *        ** * ** *

consensus_9431#0      CCAGCTGAAGCCGAT-ACAGTGACATTTATAGAAAAAAGTG----GAGTTGCTGCTAGAA 351
consensus_9431#2      CCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAA 129
consensus_9431#1      CCATGCGGACCACATCGTCGAGCGGTTGACGCAGATGGGCGCCACGATTAACTTCCCGAA 599
                      ***   * * *  **    * *   ** *   * *   * *    ** *  ** *  ***

consensus_9431#0      CATCGATGGCTTCGTTTGTAGCAAAAGTTGTGACACGGTGCGAAGAGGCACTAGAAACTA 411
consensus_9431#2      GGTGGCGGGCCGCGGC-ATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACA 188
consensus_9431#1      GGTGGCGGGCCGCGGC-ATCATCCGGGTCGTGGAGCGGTGTGACGATGCGAAGGAGAACA 658
                        * *  ***  **    *       ** ***   ***** ** ** **    ** *  *

consensus_9431#0      AACATTCA-ATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTTACCATCTGA 470
consensus_9431#2      ACAATCTGGATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTTACCATCTGA 248
consensus_9431#1      ACAATCTGGATCTCTCGGAGTGCGAGCTGATCCAGGTGCCCGATGCCGTTTACCATCTGA 718
                      *  **    ***************************************************

consensus_9431#0      TGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGC 530
consensus_9431#2      TGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGC 308
consensus_9431#1      TGAGACATACCGAGCTGAAGACGTGCGATTTGAGCAGCAACGTCATCACAAAGATATCGC 778
                      ************************************************************

consensus_9431#0      CCAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGG 590
consensus_9431#2      CCAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGG 368
consensus_9431#1      CCAAATTCGCCGTCAAGTTTAGCCTCATCACAGATCTCAACCTGTCCCACAACCAGATGG 838
                      ************************************************************

consensus_9431#0      CCCGGCTACCGGACGAGCTGGCCGATCTGCACTCCGCTGGAGATGCTGGACATTTCGCAC 650
consensus_9431#2      CCCGGCTACCGGACGAGCTGGCCGATCTGCACTC-GCTGGAGATGCTGGACATTTCGCAC 427
consensus_9431#1      CCCGGCTACCGGACGAGCTGGCCGATCTGCACTC-GCTGGAGATGCTGGACAT------- 890
                      ********************************** ******************       

consensus_9431#0      AACTCCTTCATCACACTGCCCGC-GTCGTGTTCAAGATGCCCAAGCTGCGCGAACTGAAG 709
consensus_9431#2      AACTCCTTCATCACACTGCCCGCCGTCGTGTTCAAGATGCCCAAGCTGCGCGAACTGAAG 487
consensus_9431#1      ------------------------------------------------------------
                                                                                  

consensus_9431#0      GCCAACAACAATGGCATCATCGACATCGACCGGGACGAGATCATTGCGTCGA--TCGCTC 767
consensus_9431#2      GCCAACAACAATGCCATCATCGACATCGACCGGGACGAGATCATTGCGTCCGACTCGCTC 547
consensus_9431#1      ------------------------------------------------------------
                                                                                  

consensus_9431#0      GAGCTGGTCGACCTGCGGNACAATCCG-TCACGCCGATGTGCCACGATCTGCTCAAGCAC 826
consensus_9431#2      GAGCTGGTCGACCTGCGGCACAATCCGCTCACGCCGATGTGCCACGATCTGCTCAAGCAC 607
consensus_9431#1      ------------------------------------------------------------
                                                                                  

consensus_9431#0      GCCGTACCTCTCCTTCGGACTCGCAAGCCCCTGGCTNCCCGCAACACCGGGGCTGCAACG 886
consensus_9431#2      GCCGT-CCTCTCCTTCCGGATCG---------AGCTGTCCG----AGCGGG----TGAAG 649
consensus_9431#1      ------------------------------------------------------------
                                                                                  

consensus_9431#0      GGCACGNGATTGGGCANAAGAACTNCTGNACCGNGGCAANACATGCTTGAANACTGAACC 946
consensus_9431#2      G----AGGATTGGG---AAGATTTGACGGAATGTGA------------------------ 678
consensus_9431#1      ------------------------------------------------------------
                                                                                  

consensus_9431#0      CCCCGCGCTGCGCCCCGCGCCCCGGCACACGCGCTANACACGACCCCCCGACGCACCCAG 1006
consensus_9431#2      ------------------------------------------------------------
consensus_9431#1      ------------------------------------------------------------
                                                                                  

consensus_9431#0      CCTGCNCTCCCTAACACCCTGCCCTATCNANACTCAATATCACCCAANCTGGCGCACTAN 1066
consensus_9431#2      ------------------------------------------------------------
consensus_9431#1      ------------------------------------------------------------
                                                                                  

consensus_9431#0      ACAACGN 1073
consensus_9431#2      -------
consensus_9431#1      -------
                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)