These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9799#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 947 fasta sequence [CCTGGGATGCGTGTGTGTGTGCCTGGGTACAGAAAGTACAG---AAGAAAAGTTGAGCGTTTTCAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATA-GTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGACGACCACGTGTACAGATCACCACCA--A-CACGACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTGCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGACTACTACGACCGAAACAACGGGACAAGCGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGATCGACTCGTTCATTGTCGCTGTGAGAACTTTGCGGGAATGATAAGAGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCG-AGTTGGGGAACCGATGCTGGGGAACTACGAAAACCAATGT--ACACTTCAACGGTGGAACTATGCCTTTAAGTTGTATTAAAGCATTTCAGTTATT--TAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCCACCT] [+] EMBL CNS09A40 [ TGGGATGCGTGTGTGTGTGCCTGGGTACAGAAAGTACAG AAGAAAAGTTGAGCGTTTTCAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATA GTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGACGACCACGTGTACAGATCACCACCA A CACGACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTGCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGGGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGACTACTACGAC ] [+] EMBL BM599465 [ccgcGGACGCGTG GGGTGCCTGGGTACAGAAAGTACAGAAAAAGAAAAGTTGAGCGTTTTCAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCAAAAAGCATAGGTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGACGACCACGTGTACAGACCACCACCACCATCACCACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACG ] [+] EMBL CNS09QJP [ GTGCCTGGGTA AGAAAGTACAG AAGAAAAGTTGAGCGTTTTCAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATA GTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGACGACCACGTGTACAGATCACCACCA A CACGACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTAATAACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGA AAAACGTGCAA ] [+] EMBL CNS09A49 [ TGGGTACAGAAAGTACAG AAGAAAAGTTGAGCGTTTTCAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATA GTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGACGACCACGTGTACAGATCACCACCA A CACGACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTGCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGGGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGACTACTACGACCGAAACAACGGGACAAGCGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGATCGACTCGTTCATTGTCGCTGTGAGAACTTTGCGGGAATGATAAGAGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCG AGTTGGGGAA CGATGCTGGGGAACTACGAAAACCAATGT ACACTTCAACGGTGGAACTATGCCTTTAAGTTG ] [+] EMBL CNS09ONT [ tgctgttGTACAGAAAGTACAG AAGAAAAGTTGAGCGTTTTCAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATA GTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGACGACCACGTGTACAGATCACCACCA A CACGACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTGCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGACTACTACGACCGAAACAACGGGACAAGCGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGATCGACTCGTTCATTGTCGCTGTGAGAACTTTGCGGGAATGATAAGAGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCG AGTTGGGGAACCGATGCTGGGGAACTACGAAAACCAATGT ACACTTCAACGGTGGAACTATGCCTTTAAGTTGTATTAAAGCATTTCAGTTATT TAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCCACCT] [+] EMBL BM611781 [ cc gAGAAAAGTTGAGCGTTTTCAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATA GTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGACGATCACGTGTACAGATCACCACCA A CACGACGCTGACGCTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTGCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACTCGGATACTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGACTACTACGACCGAAACAACGGGACAAGCGGATAGCTAAAGCTTCGGGGCGCGTTTTGTACTGTTTCGATCGACTCGTTCATTGTCGCTGTGAGAACTT ] [+] EMBL BM605575 [ ccGCGTTTTCAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATA GTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGACGATCACGTGTACAGATCACCACCA A CACGACGCTGACGCTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTGCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACTCGGATACTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGACTACTACGACCGAAACAACGGGACAAGCGGATAGCTAAAGCTTCGGGGCGCGTTTTGTACTGTTTCGATCGACTCGTTCATTGTCGCTGTGAGAACTTTGCGGGAgt ] [-] EMBL CNS09ONU [ taAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATA GTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGG AAAGCCATTAAACTAGTGTTTAGACGACCACGTGTACAGATCACCACCA A CACGACGCTAAAACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCATTCTCGCCACGATAACGTACGAAACGGTGCAGTTTCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTGCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGAACATACAGCTGATGATCGAGAACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGACTACTACGACCGAAACAACGGGACAAGCGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGATCAACTCGTTCATTGTCGCTGTGAGAACTTTGCGGGAATGATAAGAGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCG AGTTGGGGAACCGATGCTGGGGAACTACGAAAACCAATGT ACACTTCAACGGTGGAACTATGCCTTTAAGTTGTATTAAAGCAATTCAGT ] [+] EMBL BX614708 [ AAGCGGAACATAAATGCGTATTTTCTGTGCCTTGAAGGCGAAAATCATA GTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAATTAGTGTTTAGACGACCACGTGTACAG ACTACCA T CACCACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTCCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGATGCCAGCGACACCAGCAGCAGGAACACCAGGGACAACTACGACCGAAACAACGGGACAAACGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGATCGACTCGTTCATTATCGCTGTGAGAACTTTGCGGGAATGATTAGGGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCGTTGTTGGGGGACCGATGCTGGGGAACTACCAAAACCAATGT ACACTTCAACGGTGGAACTATGCCTTTTAGTTGTATTAAAG ] [-] EMBL CNS09A4A [ TAAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATA GTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGACGACCACGTGTACAGATCACCACCA A CACGACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTGCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGGGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGACTACTACGACCGAAACAACGGGACAAGCGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGATCGACTCGTTCATTGTCGCTGTGAGAACTTTGCGGGAATGATAAGAGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCG AGTTGGGGAACCGATGCTGGGGAACTACGAAAACCAATGT ACACTTCAACGGTGGAACTATGCCTTTAAGTTGTATTAAAGCATTTCAG ] [+] EMBL AGA284836 [ GAAAATCATA GTTGTAACAGTAGCGAGCCCCTAGGAAAGTGTGTGGCAAAGCCATTAAATTAGTGTTTAGACGACCACGTGTACAG ACTACCA T CACCACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGGCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGG ] [+] EMBL BX622385 [ AGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAATTAGTGTTTAGACGACCACGTGTACAG ACTACCA T CACCACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTCCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGATGCCAGCGACACCAGCAGCAGGAACACCAGGGACAACTACGACCGAAACAACGGGACAAACGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGATCGACTCGTTCATTATCGCTGTGAGAACTTTGCGGGAATGATTANGGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCGTTGTTGGGGAACCGATGCTG ] [+] EMBL BX620415 [ AGGAAAGTGTGTGGCAAAGCCATTAAATTAGTGTTTAGACGACCACGTGTACAG ACTACCA T CACCACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTCCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGATGCCAGCGACACCAGCAGCAGGAACACCAGGGACAACTACGACCGAAACAACGGGACAAACGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGNTTCGATCGACTCGTTCATTATCGCTGTGAGAACTTTGCGGGAATGATTAGGGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGNTATGCGCGTTGTTGGGGAACCGATGCTGG ] [-] EMBL CNS09A41 [ CATTTTCACCAACTACGAGGTCATTACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTTTTTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTGCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGTTTATGATCGAGAACTCGGACGAGCGGCTGACCGAGGGGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGACTACTACGACCGAAACAACGGGACAAGCGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGATCGACTCGTTCATTGTCGCTGTGAGAACTTTGCGGGAATGATAAGAGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCG AGTTGGGGAACCGATGCTGGGGAACTACGAAAACCAATGT ACACTTCAACGGTGGAACTATGCCTTTAAGTTGTATTAAAGCATTTCAGTTATT TTAAAAATAAAAAAA ] [-] EMBL CNS09QJQ [ CGGATATTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGACTACTACGACCGAAACAACGGGACAAGCGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGATCAACTCGTTCATTGTCGCTGTGAGAACTTTGCGGGAATGATAAGAGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCG AGTTGGGGAACCGATGCTGGGGAACTACGAAAACCAATGT ACACTTCAACGGTGGAACTATGCCTTTAAGTTGTATTAAAGCATTT ] [+] EMBL AGA285617 [ CGTTCATTATCGCTGTGAGAACTTTGCGGGAATGATTAGGGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCGTTGTTGGGGAACCGATGCTGGGGAACTACCAAAACCAATGT ACACTTCAACGGTGGAACTATGCCTTTAAGTTGTATTAAAGCATTTCAGTTATTTCTAAAAATAAAAAAAAAAA ] [-] EMBL AGA284314 [ TCATTATCGCTGTGAGAACTTTGCGGGAATGATTAGGGCGGCGGGTGTAAATATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCGTTGTTGGGGAACCGATGCTGGGGAACTACCAAAACCAATGT ACACTTCAACGGTGGAACTATGCCTTTAAGTTGTATTAAAGCATTTCAGTTATT TCTAAAATTTAAAAAAAA ] [+] EMBL BM649971 [ ATTGTCCATGCTATGCGCG AGTTGGGGAACCGATGCTGGGAAACTACCAAAACCAATGTACACACTTCAACGGTGGAACTATGCCTTTAAGTTGTATTAAAGCATTACAGTTATT Ttt ] consensusID : consensus_9799#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [GAATGCCCCNNGCTTATNCGGAACATAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATAGTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGGTAAGTCAAACGGCCAACGGAGCCTCTCTATCGCCCTTAGTGTGCACGTAAAAAGCGTCCTTGAAGTGTGTGAATTTTCTGTGTTGCGCCCGCGAGTTCGAGACAATAGGTAGAGATTTGTCCAAGAAAGGAACGAGAATTTAATCTTAATTTGAGTAGAGATATGTGTGCTAAAGTGTGATATTGAAAGCGTGCTCGATGTATGTTAAGCGAATAAAGAATGATTTCTTGTTCATATCATGGCTGGAATCCCGAGCGAGGGGAAAGAGTTCATACGGTCGAAGGGAGTGGAAGTGGGGTGGTGCTTCATTCCCTCGAACGTCACATCCCTTGGCTCTGAGGTCCCTCGTGGCGAGCTATGGGATTGCTTTCTTCGATGGTACTTTCTCGGTTTTATTAGTTTGTATAAAAAAAACACTGTAATGTATGCACCAGACTTCTGATCGGATCTTCGTGTGTCCGGCGTAACTAGAGTAAGAGTAATAAATGTATGGGATTATGGTGCAAGAGTAAGTATTGAAAGGAATGCGCGGGAGGCTCCATTTCATCATTTAGGGTACGTGCAAATAGCTTCGTAAAAATGGTGAGGGACTGTTGCATAAGAATATTATCTGTTCTGCAACGCTCGACTCGTTTCTAATCAACGAAT] [+] EMBL AL692835 [GAATGCCCCNNGCTTATNCGGAACATAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATAGTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGGTAAGTCAAACGGCCAACGGAGCCTCTCTATCGCCCTTAGTGTGCACGTAAAAAGCGTCCTTGAAGTGTGTGAATTTTCTGTGTTGCGCCCGCGAGTTCGAGACAATAGGTAGAGATTTGTCCAAGAAAGGAACGAGAATTTAATCTTAATTTGAGTAGAGATATGTGTGCTAAAGTGTGATATTGAAAGCGTGCTCGATGTATGTTAAGCGAATAAAGAATGATTTCTTGTTCATATCATGGCTGGAATCCCGAGCGAGGGGAAAGAGTTCATACGGTCGAAGGGAGTGGAAGTGGGGTGGTGCTTCATTCCCTCGAACGTCACATCCCTTGGCTCTGAGGTCCCTCGTGGCGAGCTATGGGATTGCTTTCTTCGATGGTACTTTCTCGGTTTTATTAGTTTGTATAAAAAAAACACTGTAATGTATGCACCAGACTTCTGATCGGATCTTCGTGTGTCCGGCGTAACTAGAGTAAGAGTAATAAATGTATGGGATTATGGTGCAAGAGTAAGTATTGAAAGGAATGCGCGGGAGGCTCCATTTCATCATTTAGGGTACGTGCAAATAGCTTCGTAAAAATGGTGAGGGACTGTTGCATAAGAATATTATCTGTTCTGCAACGCTCGACTCGTTTCTAATCAACGAAT] consensusID : consensus_9799#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [CCGCTCTCTATCGCCCTTAGTGTGCACGTAAAGAGCGTCCTTGAAGTGTGTGAATTTTCTGTGTTGCGCCCGCGAGTTCGAGACAATAGACGACCACGCGTACAGACTACCATCACCACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTCCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCACCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGGACTACTACGACCGAAACAACGGGACAAGCGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGATCG] [+] EMBL BM594450 [CCGCTCTCTATCGCCCTTAGTGTGCACGTAAAGAGCGTCCTTGAAGTGTGTGAATTTTCTGTGTTGCGCCCGCGAGTTCGAGACAATAGACGACCACGCGTACAGACTACCATCACCACGCTGACACTGAAAGCACCAGCCCAGATCCAGCAGAATGGAGATCGTCAATCCAAACGCGGCCATTCTCACCAACTACGAGGTCATGACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCGCAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGAGCAATCGACCGCCGGCATCATCGACTTTCTCCAGGCGATGAAGGAGTTCAACCTGACCAAAAACGAGTGCCTGATGATGGTGAACGATCCACCGTCCTCACCGCTGCACATACAGCTGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACCCGGATACTGGAACAGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGGACTACTACGACCGAAACAACGGGACAAGCGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGATCG] consensusID : consensus_9799#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [CCGAAGTTGAGCGTTTTCAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATAGTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGGATTCGCACCGTCGTCGTCGTATCAGCGCCGTGTGGAAATCGCCTTTACCAGGCCAAAGATAATCCATCATCAGCGGACACAGGAGGAAGATATAGCCCCGGCGTGACAGCTTCCTGTACCGTATTGGAATATAGTTTTGCAACACGACAACGTGTGTGTTGTTCGCGCGCGCGAGACACATTGTATTAGCGTTGGTGTATAGAAGGAAAAACAGGTTAAGACACTCTTTGCTGGCAAGAAACTAAACAAGCTCTCCGGCGATCAATCAAACACCGC] [+] EMBL BM613487 [CCGAAGTTGAGCGTTTTCAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAAAGCATAGTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGTGTTTAGGATTCGCACCGTCGTCGTCGTATCAGCGCCGTGTGGAAATCGCCTTTACCAGGCCAAAGATAATCCATCATCAGCGGACACAGGAGGAAGATATAGCCCCGGCGTGACAGCTTCCTGTACCGTATTGGAATATAGTTTTGCAACACGACAACGTGTGTGTTGTTCGCGCGCGCGAGACACATTGTATTAGCGTTGGTGTATAGAAGGAAAAACAGGTTAAGACACTCTTTGCTGGCAAGAAACTAAACAAGCTCTCCGGCGATCAATCAAACACCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9799#0 CCTGGGATGCGTGTGTGTGTGCCTGGGTACAGAAAGTACAGAAGAAAAGTTGAGCGTTTT 60 consensus_9799#2 ------------------------------------------------------------ consensus_9799#3 -------------------------------------------CCGAAGTTGAGCGTTTT 17 consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 CAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAA 120 consensus_9799#2 ---------------------------CCGCTCTCTATCGCCCTTAGTGTGCACGTAAAG 33 consensus_9799#3 CAGACGTCGCCATCTTGAAGCGGAACATAAATGCGTATTTTCGGTGCCTTGAAGGCGAAA 77 consensus_9799#1 -GAATGCCCCNNGCTT-ATNCGGAACAT-AATGCGTATTTTCGGTGCCTTGAAGGCGAAA 57 * *** * * ** * * ** consensus_9799#0 AGCATAGTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGT 180 consensus_9799#2 AGCGTCCTTGAAGTG--TGTGAATTTTCTGTGTTGCGCCCG-CGAGTTCG--AGACAA-- 86 consensus_9799#3 AGCATAGTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGT 137 consensus_9799#1 AGCATAGTTGTAACAGTAGCGAAACGTTAGGAAAGTGTGTGGCAAAGCCATTAAACTAGT 117 *** * *** * * *** * * * * * * * * * ** * consensus_9799#0 GTTTAGAC-GACCACGTGTACAGATCACCACCAACACGACGCTGACACTGAAAGCACCAG 239 consensus_9799#2 ---TAGAC-GACCACGCGTACAGA---CTACCATCACCACGCTGACACTGAAAGCACCAG 139 consensus_9799#3 GTTTAGG--ATTCGCACCGTCGTCGTCGTATCAGCGCCGTGTGGAAATCGCCTTTACCAG 195 consensus_9799#1 GTTTAGGTAAGTCAAACGGCCAACGGAGCCTCTCTATCGCCCTTAGTGTGCACGTAAAAA 177 *** * * * * * * * consensus_9799#0 CC-----CAGATCCAGCAGAATGGAGATCGT-CAATCCAAACGCGGCCATTCTCACCAAC 293 consensus_9799#2 CC-----CAGATCCAGCAGAATGGAGATCGT-CAATCCAAACGCGGCCATTCTCACCAAC 193 consensus_9799#3 GC-----CAAAGATAATCCATCATCAGCGGA-CACAGGAGGAAGATATAGCCCCGGCG-T 248 consensus_9799#1 GCGTCCTTGAAGTGTGTGAATTTTCTGTGTTGCGCCCGCGAGTTCGAGACAATAGGTAGA 237 * * * * * consensus_9799#0 TACGAGGTCATG-ACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCG 352 consensus_9799#2 TACGAGGTCATG-ACGGCCCTGAAGGACATGAAAAACAGCAAGAAAAAGTACGGACTGCG 252 consensus_9799#3 GACAGCTTCCTGTACCGTATTGGAATATA-GTTTTGCAACACGACAACGTGTGTGTTGTT 307 consensus_9799#1 GATTTGTCCAAGAAAGGAACGAGAATTTA-ATCTTAATTTGAGTAGAGATATGTG-TGCT 295 * * * * * * * * * * * ** consensus_9799#0 CAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGA 412 consensus_9799#2 CAATCTCGCCACGATCACGTACGAAACGGTGCAGTATCTGGAGGACACACCGTGCAAGGA 312 consensus_9799#3 CGCGCGCGCGAGACACATTGTATTAGCGTTGGTGTATA-GAAGGAAAAACAGGTTAAGAC 366 consensus_9799#1 AAAGTGTGATATTGAAAGCGTGCTCGATGTATGTTAAGCGAATAAAGAATGATTTCTTGT 355 * * * * ** * * * * consensus_9799#0 GCAATCGACCGCCGGCATCATCGACTTTCTG-CAGGCGATGAAGGAGTTCAACCTGACCA 471 consensus_9799#2 GCAATCGACCGCCGGCATCATCGACTTTCTC-CAGGCGATGAAGGAGTTCAACCTGACCA 371 consensus_9799#3 ACTCTTTGCTGGCAAGAAACTAAACAAGCTCTCCGGCGATCAA----TCAAACACCGC-- 420 consensus_9799#1 TCATATCATGGCTGGAATCCCGAGCGAGGGG-AAAGAGTTCATACGGTCGAAGGGAGTGG 414 * * * * * * * * * ** consensus_9799#0 AAAACGAGTG---CCTGATGATGGTGAACGATCCACCGTCCTCGCCGCTGCACATACAGC 528 consensus_9799#2 AAAACGAGTG---CCTGATGATGGTGAACGATCCACCGTCCTCACCGCTGCACATACAGC 428 consensus_9799#3 ------------------------------------------------------------ consensus_9799#1 AAGTGGGGTGGTGCTTCATTCCCTCGAACGTCACATCCCTTGGCTCTGAGGTCCCTCGTG 474 consensus_9799#0 TGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACCCGGATACTGGAAC 588 consensus_9799#2 TGATGATCGAGGACTCGGACGAGCGGCTGACCGAGGAGCAAGTCACCCGGATACTGGAAC 488 consensus_9799#3 ------------------------------------------------------------ consensus_9799#1 GCGAGCTATGGGATTGCTTTCTTCGATGGTACTTTCTCGGTTTTATTAGTTTGTATAAAA 534 consensus_9799#0 AGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGG-ACTACTACG 647 consensus_9799#2 AGACGGCCAAACTACGGACGCCAGCGACACCAGCAGCAGGAACACCAGGGGACTACTACG 548 consensus_9799#3 ------------------------------------------------------------ consensus_9799#1 AAAACACTGTAATGTATGCACCAG-ACTTCTGATCGGATCTTCGTGTGTCCGGCGTAACT 593 consensus_9799#0 ACCGAAACAACGGGACAAGCGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGA 707 consensus_9799#2 ACCGAAACAACGGGACAAGCGGATAGCTAAAGCTCCGGGGCGCGTTTTGTACTGTTTCGA 608 consensus_9799#3 ------------------------------------------------------------ consensus_9799#1 AGAGTAAGAGTAATAAATGTATGGGATTATGGTGCAAGAGTAAGTATTGAAAGGAATGCG 653 consensus_9799#0 TCGACTCGTTCATTGTCGCTGTGAGAACTTTGCGGGAATGATAAGAGCGGCGGGTGTAAA 767 consensus_9799#2 TCG--------------------------------------------------------- 611 consensus_9799#3 ------------------------------------------------------------ consensus_9799#1 CGGGAGGCTCCATTTCATCATTTAGGGTACGTGCAAATAGCTTCGTAAAAATGGTGAGGG 713 consensus_9799#0 TATATTTGTAAGAGCAAATGCCGCAGCAAATTGTCCATGTTATGCGCGAGTTGGGGAACC 827 consensus_9799#2 ------------------------------------------------------------ consensus_9799#3 ------------------------------------------------------------ consensus_9799#1 ACTGTTGCATAAGAATATTATCTGTTCTGCAACGCTCGACTCGTTTCTAATCAACGAAT- 772 consensus_9799#0 GATGCTGGGGAACTACGAAAACCAATGTACACTTCAACGGTGGAACTATGCCTTTAAGTT 887 consensus_9799#2 ------------------------------------------------------------ consensus_9799#3 ------------------------------------------------------------ consensus_9799#1 ------------------------------------------------------------ consensus_9799#0 GTATTAAAGCATTTCAGTTATTTAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCCACCT 947 consensus_9799#2 ------------------------------------------------------------ consensus_9799#3 ------------------------------------------------------------ consensus_9799#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||