These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CCGAACGGTAATGGTGTGGGAGGTCGTCACGCAGGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCACCGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACCGCCGCACACTACCCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGTGCCTGGCGCGAGCTCAAAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAACAGCAGCATCAGCAGCAGCAGCATCCGTCGAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATCATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGCCGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGAGCCTGCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGGAACCGAGCGCTGCGCTGATCTATACTTTCAAACAGTAGCAGGAGCAGTAGCAGCAGCAGCATGGTCGTGATATACCCAGCGATCGCCATTCCCACAGCGCGAACC] [+] EMBL BM622153 [CCGAACGGTAATGGTGTGGGAGGTCGTCACGCAGGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCACCGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACCGCCGCACACTACCCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGTGCCTGGCGCGAGCTCAAAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAACAGCAGCATCAGCAGCAGCAGCATCCGTCGAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATCATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGCCGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGAGCCTGCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGGAACCGAGCGCTGCGCTGATCTATACTTTCAAACAGTAGCAGGAGCAGTAGCAGCAGCAGCATGGTCGTGATATACCCAGCGATCGCCATTCCCACAGCGCGAACC] consensusID : consensus_999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CCGGGAGCAGCTGTAGGTGGCTCCATTGGCAATGGTAACAGTGTGGGAGGTCGTCACGCAGGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCACCGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACGGCCGCGCACTACCCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGCGCCTGGGGCGAGCTCAAAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAGCAGCAGCAGCAGCAGCAACATCCGTCAAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATCATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGCCGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGTGCCTGCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGGCAACCGAGCGCTGCGCTGATCTATACTTTCAAACAGTAGCAGCAACAGCATGGTCGTG] [+] EMBL BM615324 [CCGGGAGCAGCTGTAGGTGGCTCCATTGGCAATGGTAACAGTGTGGGAGGTCGTCACGCAGGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCACCGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACGGCCGCGCACTACCCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGCGCCTGGGGCGAGCTCAAAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAGCAGCAGCAGCAGCAGCAACATCCGTCAAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATCATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGCCGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGTGCCTGCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGGCAACCGAGCGCTGCGCTGATCTATACTTTCAAACAGTAGCAGCAACAGCATGGTCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_999#0 ---------------------------CCGAACGGTAATGGTGTGGGAGGTCGTCACGCA 33 consensus_999#1 CCGGGAGCAGCTGTAGGTGGCTCCATTGGCAATGGTAACAGTGTGGGAGGTCGTCACGCA 60 ** ***** ******************** consensus_999#0 GGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCAC 93 consensus_999#1 GGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCAC 120 ************************************************************ consensus_999#0 CGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACCGCCGCACACTAC 153 consensus_999#1 CGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACGGCCGCGCACTAC 180 *********************************************** ***** ****** consensus_999#0 CCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGTGCCTGGCGCGAGCTCA 213 consensus_999#1 CCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGCGCCTGGGGCGAGCTCA 240 ******************************************* ****** ********* consensus_999#0 AAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAACAGCAGCATCAGCAGCAGCAG 273 consensus_999#1 AAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAGCAGCAGCA---GCAGCAGCAA 297 ************************************** ******** ********* consensus_999#0 CATCCGTCGAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATC 333 consensus_999#1 CATCCGTCAAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATC 357 ******** *************************************************** consensus_999#0 ATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGC 393 consensus_999#1 ATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGC 417 ************************************************************ consensus_999#0 CGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGAGCCT 453 consensus_999#1 CGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGTGCCT 477 ******************************************************* **** consensus_999#0 GCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGG-AAC 512 consensus_999#1 GCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGGCAAC 537 ******************************************************** *** consensus_999#0 CGAGCGCTGCGCTGATCTATACTTTCAAACAGTAGCAGGAGCAGTAGCAGCAGCAGCATG 572 consensus_999#1 CGAGCGCTGCGCTGATCTATACTTTCAAACAG------------TAGCAGCAACAGCATG 585 ******************************** ******** ******* consensus_999#0 GTCGTGATATACCCAGCGATCGCCATTCCCACAGCGCGAACC 614 consensus_999#1 GTCGTG------------------------------------ 591 ****** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||