These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CGCGAGTGAAAAATCACGACACGTTGAGAAACGGCTAAGAAAATTATAGTAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAGCGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTATTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGGATTTCTATGATGACGAGTACGAACTGGATGACGACGATGATGACGAACAAATGAGCGCCAGCGATTACGAAGACGGTGACGATAGTGGCAACGGAGAGTCGTGATCCATTTTCTGAAACAATTAAATAAACTCGAAAACGCTATAATTATTATCAGTTCTGTATAGATTAATAAATTAACGGGCTTCTAAACCGGACGCTCTCTCTTTTCAGACGTGCCACCTAAATATTCAAATCACACGGTCAAAAAAGAAAAAAAAGGAAATTATTCGTCGTTTAGATGTTTAAGACAGAGTTTAAAGTAACGTTGATTATTGCATTTAATTCGTTGTCGCGATGTTTCAGGCAGAATCAAC] [+] EMBL BI513656 [CGCGAGTGAAAAATCACGACACGTTGAGAAACGGCTAAGAAAATTATAGTAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAGCGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTATTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGGATTTCTATGATGACGAGTACGAACTGGATGACGACGATGATGACGAACAAATGAGCGCCAGCGATTACGAAGACGGTGACGATAGTGGCAACGGAGAGTCGTGATCCATTTTCTGAAACAATTAAATAAACTCGAAAACGCTATAATTATTATCAGTTCTGTATAGATTAATAAATTAACGGGCTTCTAAACCGGACGCTCTCTCTTTTCAGACGTGCCACCTAAATATTCAAATCACACGGTCAAAAAAGAAAAAAAAGGAAATTATTCGTCGTTTAGATGTTTAAGACAGAGTTTAAAGTAACGTTGATTATTGCATTTAATTCGTTGTCGCGATGTTTCAGGCAGAATCAAC] consensusID : consensus_1011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [CGTCCTGCCGCGAGTGAAAAATCACGACACGTTGAGAAACGGCTAAGAAAATTATAGTAAAGACTGTAAATTGTCTGGAAAACCCGTTGGAAATTGATTCTCACGAGAAGGAGTAGTGTTCGCAAAGGCGTCCGTCCGACTGTAGTGTTCTGTGCTACCACTTCAGGAGGTTTGGGACGTTCCGCTTCCTGGAACAGACTGCAACTCTACTTCCAGAAAAAAAAATATGGCACAAACAACGAGTAGCGCTTTAAGGGCACTTGCCCTTGAATATAAAAGTCTTCAAGAGGAACCCGTCGAGGGATTCCGCGTGAAACTCGTTAACGAGGACAACATGTTTGAGTGGGAAGTGGCTATCTTCGGGCCCCCGGATACTCTTTACCAAGGAGGATACTTCAAGGCACACATGAAATTCCCTCCGGATTATCCGTACAGCCCGCCCAGCATTCGGTTTATGACGAAAGTTTGGCATCCGAACGTGTACGAGAATGGAGATCTATGTATATCGATTCTGCATCC] [+] EMBL BI510602 [CGTCCTGCCGCGAGTGAAAAATCACGACACGTTGAGAAACGGCTAAGAAAATTATAGTAAAGACTGTAAATTGTCTGGAAAACCCGTTGGAAATTGATTCTCACGAGAAGGAGTAGTGTTCGCAAAGGCGTCCGTCCGACTGTAGTGTTCTGTGCTACCACTTCAGGAGGTTTGGGACGTTCCGCTTCCTGGAACAGACTGCAACTCTACTTCCAGAAAAAAAAATATGGCACAAACAACGAGTAGCGCTTTAAGGGCACTTGCCCTTGAATATAAAAGTCTTCAAGAGGAACCCGTCGAGGGATTCCGCGTGAAACTCGTTAACGAGGACAACATGTTTGAGTGGGAAGTGGCTATCTTCGGGCCCCCGGATACTCTTTACCAAGGAGGATACTTCAAGGCACACATGAAATTCCCTCCGGATTATCCGTACAGCCCGCCCAGCATTCGGTTTATGACGAAAGTTTGGCATCCGAACGTGTACGAGAATGGAGATCTATGTATATCGATTCTGCATCC] consensusID : consensus_1011#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [TGTATATCGATTCTGCATCCACCAGTGGATGATCCACAAAGTGGTGAACTGCCATGCGAAAGGTGGAATCCGACACAAAATGTTAGGACGATCCTGTTGTCCGTGATATCGTTACTGAACGAACCGAATACGTACAGCCCTGCCAACGTGGATGCCTCTGTAATGTATAGGCGCTGGCGCGACTCCAAGGGTAAAGACAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAGCGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTATTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGGATTTCTATGATGACGAGTACGA] [+] EMBL BI515008 [TGTATATCGATTCTGCATCCACCAGTGGATGATCCACAAAGTGGTGAACTGCCATGCGAAAGGTGGAATCCGACACAAAATGTTAGGACGATCCTGTTGTCCGTGATATCGTTACTGAACGAACCGAATACGTACAGCCCTGCCAACGTGGATGCCTCTGTAATGTATAGGCGCTGGCGCGACTCCAAGGGTAAAGACAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAGCGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTATTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGGATTTCTATGATGACGAGTACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1011#0 ------------------------------------------------------------ consensus_1011#2 TGTATATCGATTCTGCATCCACCAGTGGATGATCCACAAAGTGGTGAACTGCCATGCGAA 60 consensus_1011#1 ------------------------------------------------------------ consensus_1011#0 ------------------------------------------------------------ consensus_1011#2 AGGTGGAATCCGACACAAAATGTTAGGACGATCCTGTTGTCCGTGATATCGTTACTGAAC 120 consensus_1011#1 ------------------------------------------------------------ consensus_1011#0 --------------------------CGCGAGTGAAAA-ATCACG-ACACGTTGAGAAAC 32 consensus_1011#2 GAACCGAATACGTACAGCCCTGCCAACGTGGATGCCTCTGTAATGTATAGGCGCTGGCGC 180 consensus_1011#1 ------------------CGTCCTGCCGCGAGTGAAAA-ATCACG-ACACGTTGAGAAAC 40 ** * ** * * * * * * * * consensus_1011#0 GGCTAAGAAAATTATAGTAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAG-- 90 consensus_1011#2 GACTCCAAGGGTAAAGACAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAG-- 238 consensus_1011#1 GGCTAAGAAAATTATAGTAAAGACTGT-AAATTGTC-TGGAAAACCCGTTGGAAATTGAT 98 * ** * * * ***** * * *** * ** * *** * * * ** * consensus_1011#0 -----CGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTA 145 consensus_1011#2 -----CGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTA 293 consensus_1011#1 TCTCACGAGAAGGAGTAGTGTTCGCAAAGGCGTCCGTCCGACTGTAGTGTTCTGTG-CTA 157 *** * * ** * ** ** * * *** *** * ** consensus_1011#0 TTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGG-ATTTCTATG 204 consensus_1011#2 TTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGG-ATTTCTATG 352 consensus_1011#1 CCACTTCAGGAGGTTTGGGACGTTCCGCTTCCTGGAACAGACTGCAACTCTACTTCCAGA 217 * * * * ** ** * * * * ** * *** * consensus_1011#0 ATGACGAGTACGAACTGGATGACGACGATGATGACGAACAAATGAGCGCCAGCGATTACG 264 consensus_1011#2 ATGACGAGTACGA----------------------------------------------- 365 consensus_1011#1 AAAAAAAATATGGCACAAACAACGA--GTAGCGCTTTAAGGGCACTTGCCCTTGAATATA 275 * * * ** * consensus_1011#0 AAGACGGTGACGATAGTGGCAACGGAGAGTCGTGATCCATTTTCTGAAACAATTA-AATA 323 consensus_1011#2 ------------------------------------------------------------ consensus_1011#1 AAAGTCTTCAAGAGGAACCCGTCGAGGGATTCCGCGTGAAACTCGTTAACGAGGACAACA 335 consensus_1011#0 AACTCGAAAACGCTATAATTATTATCAGTTCTGTATAGATTAATAAATTAACGGGCTTCT 383 consensus_1011#2 ------------------------------------------------------------ consensus_1011#1 TGTTTGAGTGGGAAGTGGCTATCTTCGGGCCCCCGGATACTCTTTACCAAGGAGGATACT 395 consensus_1011#0 AAACCGGACGCTCTCTCTTTTCAGACGTGCCACCTAAATATTCAAATCACACGGTCAAAA 443 consensus_1011#2 ------------------------------------------------------------ consensus_1011#1 TCAAGGCACACA-TGAAATTCCCTCCGGATTATCCGTACAGCCCGCCCA-GCATTCGGTT 453 consensus_1011#0 AAGAAAAAAAAGGAAATTATTCGTCGTTTAGATGTTTAAGACAGAGTTTAAAGTAACGTT 503 consensus_1011#2 ------------------------------------------------------------ consensus_1011#1 TATGACGAAAGTTTGGCATCCGAACGTGTACGAGAATGGAGATCTATGTATATCGATTCT 513 consensus_1011#0 GATTATTGCATTTAATTCGTTGTCGCGATGTTTCAGGCAGAATCAAC 550 consensus_1011#2 ----------------------------------------------- consensus_1011#1 GCATCC----------------------------------------- 519 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |