These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 488 fasta sequence [AGTATGGTGTAGTAGTATATAGAGATGATGGAAAAATAGAAAATTTTATAGAAAAGCCACAAGAATTTATTTCAAATAAAATTAATGCAGGCATGTATATTTTGAATCCAAGTGTCTTAAAAAGAATAGAATTGAAGCCAACAAGTATAGAAAAAGAAATTTTTCCGAATATGGCTCGTGATGGAGAATTATATGCAATGGAACTAACAGGATTCTGGATGGATGTTGGACAACCAAAAGATTTTCTTAAAGGAATGAGCATGTACCTGACATCTCTAAGACAAAAGTCTCCAGCAAAATTATATTCTGGTCCAGGAGTAGTAGGAAATGTCTTAATAGATGAAACAGCAAAGATTGGCAAAGATTGTAGAATAGGACCAAATGTTACAATTGGTCCTGNNGTTATTTTATCCGATGGTTGTTGCATTAAAAGAAGTACTATTCTTNNGGCAGCTATAATAAAAGAACACGCATGGCTGGATGGGTGC] [+] EMBL BI516068 [AGTATGGTGTAGTAGTATATAGAGATGATGGAAAAATAGAAAATTTTATAGAAAAGCCACAAGAATTTATTTCAAATAAAATTAATGCAGGCATGTATATTTTGAATCCAAGTGTCTTAAAAAGAATAGAATTGAAGCCAACAAGTATAGAAAAAGAAATTTTTCCGAATATGGCTCGTGATGGAGAATTATATGCAATGGAACTAACAGGATTCTGGATGGATGTTGGACAACCAAAAGATTTTCTTAAAGGAATGAGCATGTACCTGACATCTCTAAGACAAAAGTCTCCAGCAAAATTATATTCTGGTCCAGGAGTAGTAGGAAATGTCTTAATAGATGAAACAGCAAAGATTGGCAAAGATTGTAGAATAGGACCAAATGTTACAATTGGTCCTGNNGTTATTTTATCCGATGGTTGTTGCATTAAAAGAAGTACTATTCTTNNGGCAGCTATAATAAAAGAACACGCATGGCTGGATGGGTGC] [+] EMBL BI512271 [AGTATGGTGTAGTAGTATATAGAGATGATGGAAAAATAGAAAATTTTATAGAAAAGCCACAAGAATTTATTTCAAATAAAATTAATGCAGGCATGTATATTTTGAATCCAAGTGTCTTAAAAAGAATAGAATTGAAGCCAACAAGTATAGAAAAAGAAATTTTTCCGAATATGGCTCGTGATGGAGAATTATATGCAATGGAACTAACAGGATTCTGGATGGATGTTGGACAACCAAAAGATTTTCTTAAAGGAATGAGCATGTACCTGACATCTCTAAGACAAAAGTCTCCAGCAAAATTATATTCTGGTCCAGGAGTAGTAGGAAATGTCTTAATAGATGAAACAGCAAAGATTGGCAAAGATTGTAGAATAGGACCAAATG ] consensusID : consensus_1038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [GGACCAAATGTTACAATTGGTCCTGGTGTTATTTTATCCGATGGTTGTTGCATTAAAAGAAGTACTATTCTTAAGGCAGCTATAATAAAAGAACACGCATGGCTGGATGGGTGCATTGTGGGCTGGAAAAGTGTTGTAGGACGTTGGGTACGAATGGAAGGTACTACAGTACTTGGTGAAGATGTAATTGTTAAGGATGAATTATATATTAATGGTGGTCAAGTTTTACCTCACAAGAATATTTCCAGTTCTGTACCAGAACCACAAATAATCATGTGACCAAAAATAATATCTTAAAGTACACATCGAACATGATAAATGACCAAATTATGAAACATTTTATAAATAAACTTTTTATCAGCTTTTTTAATCATATGTAAATTGATGTTCATTATATATTCGTTTATATTTTTTTTTACATTTACAATTCAAATAAGCTTTATTGGCAGTCCTCG] [+] EMBL BI511385 [GGACCAAATGTTACAATTGGTCCTGGTGTTATTTTATCCGATGGTTGTTGCATTAAAAGAAGTACTATTCTTAAGGCAGCTATAATAAAAGAACACGCATGGCTGGATGGGTGCATTGTGGGCTGGAAAAGTGTTGTAGGACGTTGGGTACGAATGGAAGGTACTACAGTACTTGGTGAAGATGTAATTGTTAAGGATGAATTATATATTAATGGTGGTCAAGTTTTACCTCACAAGAATATTTCCAGTTCTGTACCAGAACCACAAATAATCATGTGACCAAAAATAATATCTTAAAGTACACATCGAACATGATAAATGACCAAATTATGAAACATTTTATAAATAAACTTTTTATCAGCTTTTTTAATCATATGTAAATTGATGTTCATTATATATTCGTTTATATTTTTTTTTACATTTACAATTCAAATAAGCTTTATTGGCAGTCCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1038#0 -AGTATGGTGTAGTAGTATATAGAGATGATGGAAAAATAGAAAATT-TTATAGAAAAGCC 58 consensus_1038#1 GGACCAAATGTTACAATTGGTCCTGGTGTTATTTTATCCGATGGTTGTTGCATTAAA--- 57 *** * * * * ** * * ** ** ** * *** consensus_1038#0 ACAAGAATTTATTTCAAATAAAAT-TAATGCAGGCATGTATATT-TTGAATCCAAGTGTC 116 consensus_1038#1 AGAAGTACTATTCTTAAGGCAGCTATAATAAAAGAACACGCATGGCTGGATGGGTGCATT 117 * *** * * * * ** * * **** * * * ** ** ** * * consensus_1038#0 TTAAAA-AGAATAGAATTGAAGCCAACAAGTATAGAAAAAGAAATTTTTCCGAATATGGC 175 consensus_1038#1 GTGGGCTGGAAAAGTGTTGTAGGACGTTGG-GTACGAATGGAAGGT------ACTACAGT 170 * *** ** *** ** * ** ** *** * * ** * consensus_1038#0 TCGTGATGGAGAATTATATGCAATGGAACTAACAGGATTCTGGATGGATGTTGGACAACC 235 consensus_1038#1 ACTTGGTGAAGATGTAATTGTTAAGGAT------GAATTATATATTAATGGTGGTCAAGT 224 * ** ** *** ** ** * *** * *** * ** *** *** *** consensus_1038#0 AAAAGATTTTCTTAAAGGAATGAGCATGTACCTGACATCTCTAAGACAAAAGTCTCCAGC 295 consensus_1038#1 T-----TTACCTCACAAGAATATTTCCAGTTCTG---TACCAGAACCACAAATAATCATG 276 ** ** * * **** *** * * * ** ** * ** consensus_1038#0 AAAATTATATTCTGGTCCAGGAGTAGTAGGAAATGTCTTAATAGATGAAACAGCAAAGAT 355 consensus_1038#1 TGACCAAAAATAATATCTTAAAGTAC------ACATCGAACATGATAAATGACCAAA--T 328 * * * * ** **** * ** * *** ** * **** * consensus_1038#0 TGGCAAAGATTGTAGAATAGGACCAAATGTTACAATTGGTCCTGNNGTTATTTTATCCGA 415 consensus_1038#1 TATGAAACATTTTATAAATAAACT---TTTTATCAGCTTTTTTAATCATATGTAAATTGA 385 * *** *** ** ** ** * *** * * * *** * * ** consensus_1038#0 TGGTTGTTGCATTAAAAGAAGTACTATTCTTNNGGCAGCTATAATAAAAGAACACGCATG 475 consensus_1038#1 TGTTCATTATAT--ATTCGTTTATATTTTTTTTTACATTTACAATTCAA--ATAAGCTTT 441 ** * ** ** * ** ** ** ** ** *** ** * * ** * consensus_1038#0 GCTGGATGGGTGC- 488 consensus_1038#1 ATTGGCAGTCCTCG 455 *** * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |