These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 816 fasta sequence [CAAGGACGTCTTGGAACGATCCTGGGAAGTAGTCGACAATGTGAATGTCTCCCTGCGACTTTGGGACACATTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGTCGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTGGTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCGTGCTGTTAGTGGGATGCAAGAACGATTTGCGTTACATGTATCGAGATGAAACTTATTTGAGCTATTTTCGTGATCGAAGTCCGTTCGTGAGAGCCACGAGAAAGAGCGATCTGGTGATGCCTGATCAAGCTCGAGCCGTTGCACGTGAACTTGGCGTTTGTTATTACGAGACCAGTGTCTTCACGTATTACGGTGTTAATGAAGTGTTCGAAAATTCGATACGTGCTGCCTTAATTGCGAGGCGTCAGCAACGATTTTGGATGACGAACTTGAAGAGGGTGCAGAGACCTCTGCTTCAGGCACCATTTTGTCCACCGAAACCTGTTCCACCGGAAGTGTGTCTAGCTGCAAGCACTTATGAAGAGAATATGAAGACACTATGGACAAAGCCTGTTCACACTGACGTGACTTAATAGCCGGAAACTGCACGTTTTCCGCTCATAGGTGTCTTTTAGCCGCTGCATCGCCTGCATTTCATCGACTTTTCTCTATGGAACTTGTTCAAGAGCAAACACCTCGAAGTTCCAGCGAATCTAGCATGGTGTTTCATATTTCTTATCATTTTTTTTACTATTTTTTGTCTTACTTATAAACGTTG] [+] EMBL BI502835 [CAAGGACGTCTTGGAACGATCCTGGGAAGTAGTCGACAATGTGAATGTCTCCCTGCGACTTTGGGACACATTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGTCGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTGGTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCGTGCTGTTAGTGGGATGCAAGAACGATTTGCGTTACATGTATCGAGATGAAACTTATTTGAGCTATTTTCGTGATCGAAGTCCGTTCGTGAGAGCCACGAGAAAGAGCGATCTGGTGATGCCTGATCAAGCTCGAGCCGTTGCACGTGAACTTGGCGTTTGTTATTACGAGACCAGTGTCTTCACGTATTACGGTGTTAATGAAGTGTTCGAAAATTCGATACGTGCTGCCTTAATTGCGAGGCGTCAGCAACGATTTTGGATGACGAACTTGAAGAGGGTGCAGAGACCTCTGCTTCAGGCACCATTTT ] [+] EMBL BI507123 [ ATCGAGATGAAACTTATTTGAGCTATTTTCGTGATCGAAGTCCGTTCGTGAGAGCCACGAGAAAGAGCGATCTGGTGATGCCTGATCAAGCTCGAGCCGTTGCACGTGAACTTGGCGTTTGTTATTACGAGACCAGTGTCTTCACGTATTACGGTGTTAATGAAGTGTTCGAAAATTCGATACGTGCTGCCTTAATTGCGAGGCGTCAGCAACGATTTTGGATGACGAACTTGAAGAGGGTGCAGAGACCTCTGCTTCAGGCACCATTTTGTCCACCGAAACCTGTTCCACCGGAAGTGTGTCTAGCTGCAAGCACTTATGAAGAGAATATGAAGACACTATGGACAAAGCCTGTTCACACTGACGTGACTTAATAGCCGGAAACTGCACGTTTTCCGCTCATAGGTGTCTTTTAGCCGCTGCATCGCCTGCATTTCATCGACTTTTCTCTATGGAACTTGTTCAAGAGCAAACACCTCGAAGTTCCAGCGAATCTAGCATGGTGTTTCATATTTCTTATCATTTTTTTTACTATTTTTTGTCTTACTTATAAACGTTG] consensusID : consensus_1075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [TTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGTCGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTGGTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCATTTTCCGTCAATGAGCACGGCACGTTTTTCGAATGTGAAGAACGTGAATGCTTTAAATTGCTCATCCATTCTGATCACATAATAAGTGATTTTTATACAAGAGATATTTCAGTGGCTGTTGAAATCTTTGAGATTTTTCAAATTTTTTCTGTTAATATTGTTCAAGATTTCTGTATATTCTGTATACAAGAAAATTTCTAAATCGATTTCAAAAAGAATTTTAGAAATGCATCAAATCCGAATTGCATTTTATACCGAATTGCTCTGCATCTAAATGATAAGAAATCTTGGACAGTATTTACTCGAATGATTATTATAATTTCCACTTCCCTCTCCCTACAAAAATTACAAT] [+] EMBL BI511659 [TTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGTCGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTGGTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCATTTTCCGTCAATGAGCACGGCACGTTTTTCGAATGTGAAGAACGTGAATGCTTTAAATTGCTCATCCATTCTGATCACATAATAAGTGATTTTTATACAAGAGATATTTCAGTGGCTGTTGAAATCTTTGAGATTTTTCAAATTTTTTCTGTTAATATTGTTCAAGATTTCTGTATATTCTGTATACAAGAAAATTTCTAAATCGATTTCAAAAAGAATTTTAGAAATGCATCAAATCCGAATTGCATTTTATACCGAATTGCTCTGCATCTAAATGATAAGAAATCTTGGACAGTATTTACTCGAATGATTATTATAATTTCCACTTCCCTCTCCCTACAAAAATTACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1075#0 CAAGGACGTCTTGGAACGATCCTGGGAAGTAGTCGACAATGTGAATGTCTCCCTGCGACT 60 consensus_1075#1 ------------------------------------------------------------ consensus_1075#0 TTGGGACACATTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGT 120 consensus_1075#1 ----------TTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGT 50 ************************************************** consensus_1075#0 CGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTG 180 consensus_1075#1 CGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTG 110 ************************************************************ consensus_1075#0 GTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCGTGCTGTTAGTGGGATGCAAGAA 240 consensus_1075#1 GTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCAT--TTTCCGTCAA---TGAGCA 165 ************************************* * * * ** ** * consensus_1075#0 CGATTTGCGTTACATGTATCGAGA-TGAAACTTATTTGAGCTATTTTCGTGATCGAAGTC 299 consensus_1075#1 CGGCACGTTTTTCGAATGTGAAGAACGTGAATGCTTTAAATTGCTC-----------ATC 214 ** * ** * * * *** * * * *** * * * ** consensus_1075#0 CGTTCGTGAGAGCCACGAGAAAGAGCGATCTGGTGATGCCTGATCAAGCTCGAGCCGTTG 359 consensus_1075#1 CATTC-TGA---TCAC-ATAATAAGTGATTT--TTATACAAGAG-ATATTTCAGTGGCTG 266 * *** *** *** * ** ** *** * * ** * ** * * ** * ** consensus_1075#0 CACGTGAACTTGGCGTTTGTTATTACGAGACCAGTGTCTTCACGTATTACGGTGTTAATG 419 consensus_1075#1 T-TGAAATCTTTGAGATTTTT---------CAAATTTTTTC-----------TGTTAAT- 304 * * *** * * ** ** * * * * *** ******* consensus_1075#0 AAGTGTTCGAAAATTCGATACGTGCTGCCTTAATTGCGAGGCGTCAGCAACGATTTTGGA 479 consensus_1075#1 -ATTGTTCAAGATTTCTGTATATTCTGTAT--ACAAGAAAATTTCTAAATCGATTTCAAA 361 * ***** * * *** ** * *** * * * ** * ****** * consensus_1075#0 TGACGAACTTGAAGAGGGTGCAGAGACCTCTGCTTCAGGCACCATTTTGTCCACCGAAAC 539 consensus_1075#1 --AAGAATTTTAGAAA--TGCA------TCAAATCCGAATTGCATTTTAT--ACCGAATT 409 * *** ** * * **** ** * * ****** * ****** consensus_1075#0 CTGTTCCACCGGAAGTGTGTCTAGCTGCAAGCACTTATGAAGAGAAT-ATGAAGACACTA 598 consensus_1075#1 GCTCTGCATCTAAATGATAAGAAATCTTGGACAGTATTTACTCGAATGATTATTATAATT 469 * ** * ** * * ** * * * **** ** * * * * consensus_1075#0 TGGACAAAGCCTGTTCACACTGACGTGACTTAATAGCCGGAAACTGCACGTTTTCCGCTC 658 consensus_1075#1 TCCACTTC-CCTCTCCCTACAAAAATTAC--AAT-------------------------- 500 * ** *** * * ** * * ** *** consensus_1075#0 ATAGGTGTCTTTTAGCCGCTGCATCGCCTGCATTTCATCGACTTTTCTCTATGGAACTTG 718 consensus_1075#1 ------------------------------------------------------------ consensus_1075#0 TTCAAGAGCAAACACCTCGAAGTTCCAGCGAATCTAGCATGGTGTTTCATATTTCTTATC 778 consensus_1075#1 ------------------------------------------------------------ consensus_1075#0 ATTTTTTTTACTATTTTTTGTCTTACTTATAAACGTTG 816 consensus_1075#1 -------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |