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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[CACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGAAGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGATTGGTTCGATCGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAGACAGGAGTTAAATCGGCCTTAAATACGATTGGTCGCATAGATACCAAACCCCCTCCACTCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTCAGCGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAAGTAATCGTCGTCCCTTTTCGTTTTTCGTCCGTTTTTAGCTTTAAACCCCGTTGACTTGTGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCGT]
[+] EMBL BI506738 [CACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGAAGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGATTGGTTCGATCGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAGACAGGAGTTAAATCGGCCTTAAATACGATTGGTCGCATAGATACCAAACCCCCTCCACTCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTCAGCGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAAGTAATCGTCGTCCCTTTTCGTTTTTCGTCCGTTTTTAGCTTTAAACCCCGTTGACTTGTGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCGT]
consensusID : consensus_1107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[GATTGGACACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGAAGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGATTGGTTCGATCGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAGACAGGAGTTAAATCGGCCTTAAATACGATTGGTCGCATAGATACCAAACCCCCTCCACTCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTCAGCGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAAGTAATCGTCGTCCCTTTCCGGAGAGGAGGATGATGAAAAGGTGTATATAAAAAAAAAA]
[+] EMBL BI506811 [GATTGGACACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGAAGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGATTGGTTCGATCGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAGACAGGAGTTAAATCGGCCTTAAATACGATTGGTCGCATAGATACCAAACCCCCTCCACTCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTCAGCGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAAGTAATCGTCGTCCCTTTCCGGAGAGGAGGATGATGAAAAGGTGTATATAAAAAAAAAA]
consensusID : consensus_1107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[CCCCGTTGACTTGTGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCGTGTGTAGCGATATACTCGCGATTAGGAATTGAAGAATCAAATTACAATATTTACTTTCGAACAAGTACCATCGAATAAGTTTTCCGGGCCACGATATTAGAATTATATACCTTATATAAACTTGCAACAAACAGTGCACGTATCACCGATCATCTCGTTGGTATATGCATATACGTATAGTGTGTATGTTTTGGCCTAAAAAAAAGAGTAAGAGAAAGAGGATTTTTCTCTTTCGTTCACGTGTTATACATTACACCTGGTGACTTTGTTAATTTTTCGTTTTGTTTACGAAAGTAAGGTTC]
[+] EMBL BI510064 [CCCCGTTGACTTGTGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCGTGTGTAGCGATATACTCGCGATTAGGAATTGAAGAATCAAATTACAATATTTACTTTCGAACAAGTACCATCGAATAAGTTTTCCGGGCCACGATATTAGAATTATATACCTTATATAAACTTGCAACAAACAGTGCACGTATCACCGATCATCTCGTTGGTATATGCATATACGTATAGTGTGTATGTTTTGGCCTAAAAAAAAGAGTAAGAGAAAGAGGATTTTTCTCTTTCGTTCACGTGTTATACATTACACCTGGTGACTTTGTTAATTTTTCGTTTTGTTTACGAAAGTAAGGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1107#0 -------CACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGA 53
consensus_1107#1 GATTGGACACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGA 60
consensus_1107#2 -----------CCCCGTTGACTTGTGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCG 49
* ** ** * ** * ** * * *
consensus_1107#0 AGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGAT 113
consensus_1107#1 AGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGAT 120
consensus_1107#2 TGTGTAGCGATATACTCGCGATTAGGAATTGAAGA--ATCAAATTA-CAATATTTACTTT 106
* * ** * ***** * * ** * *** * * * *** *
consensus_1107#0 TGGTTCGAT-CGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAG 172
consensus_1107#1 TGGTTCGAT-CGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAG 179
consensus_1107#2 CGAACAAGTACCATCGAATAAGTT-TTCCGGGCCACGATATTAGA-ATTATATACCTTAT 164
* * * ****** * *** * * ** * * * * ** ** *
consensus_1107#0 ACAGGAGTTAAATCGGCCTTAAA--TACGATTGGTCGCATAGATACCAAACCCCCTCCAC 230
consensus_1107#1 ACAGGAGTTAAATCGGCCTTAAA--TACGATTGGTCGCATAGATACCAAACCCCCTCCAC 237
consensus_1107#2 ATAAACTTGCAACAAACAGTGCACGTATCACCGATCATCTCGTTGGTATATGCA-TATAC 223
* * * ** * * * ** * * ** * * * * * * * **
consensus_1107#0 TCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTC 290
consensus_1107#1 TCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTC 297
consensus_1107#2 GTATAGTGTGTATGTTTTGGCCTAAAAAAAAGA-GTAAGAGAAAGAGGATTTTTCTCTTT 282
* * * ** * *** * *** ** * ** ***
consensus_1107#0 AG--CGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAA 348
consensus_1107#1 AG--CGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAA 355
consensus_1107#2 CGTTCACGTGTTATACATTACACCTGGTGACTTTGTTAATTTTTCGTTTTGTTTACGAAA 342
* * ** * * ** * * *** * ** * * * * * ****
consensus_1107#0 GTAATCGTCGTCCCTTTTCGTTTTTC--GTCCGTTTTTAGCTTTAAACCCCGTTGACTTG 406
consensus_1107#1 GTAATCGTCGTCCCTTTCCGGAGAGGAGGATGATGAAAAGGTGTATATAAAAAAAAAA-- 413
consensus_1107#2 GTAAGGTTC--------------------------------------------------- 351
**** **
consensus_1107#0 TGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCGT 443
consensus_1107#1 -------------------------------------
consensus_1107#2 -------------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |