These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence [GTCCGAAGTCGTCGGGAAATCACGAAGTCACGAAGAGATGCGATTGAAAAATATAGTTCGGTGTTGCAGTTTCTTTCAGAATTTGGATCTTTTCTTTTCATGATTAATCAGGAGAGTAGTCATTAAGAGTAATTCGTTCTGTCTTCAGAAAAGTCTATCCATCTTTTTAATTAGACTTCTTATTTTTATTCTTCTATTTCTTCTTTCCTCCCTCGAATATTGTAATACAATTTATGCTAAAAACAAGAAATTAAGTTAGTAAAGAAATATAATATATTAGAAAGATCGATTACAAGTAACCGGAAGTATAGATCTTGCTCTTTGGATCTAAAGGATATTGGTACCGAGTATTAACATTTCCTTGTTAATTTCGTCGAGGTTAAAAGGAAACAATTAATACTTAGAAGTATCCTTAGCTAATTCTATTAATTAATTATCTAAATTATCTTATTACCTTCTTCAGCGCTTTTCATTGCCAATAAAATCTCCTACTCTGCCGTATCTAAAGAACAAATCTTTTAAATCCATTTTAACAATAAAC] [+] EMBL BI516950 [GTCCGAAGTCGTCGGGAAATCACGAAGTCACGAAGAGATGCGATTGAAAAATATAGTTCGGTGTTGCAGTTTCTTTCAGAATTTGGATCTTTTCTTTTCATGATTAATCAGGAGAGTAGTCATTAAGAGTAATTCGTTCTGTCTTCAGAAAAGTCTATCCATCTTTTTAATTAGACTTCTTATTTTTATTCTTCTATTTCTTCTTTCCTCCCTCGAATATTGTAATACAATTTATGCTAAAAACAAGAAATTAAGTTAGTAAAGAAATATAATATATTAGAAAGATCGATTACAAGTAACCGGAAGTATAGATCTTGCTCTTTGGATCTAAAGGATATTGGTACCGAGTATTAACATTTCCTTGTTAATTTCGTCGAGGTTAAAAGGAAACAATTAATACTTAGAAGTATCCTTAGCTAATTCTATTAATTAATTATCTAAATTATCTTATTACCTTCTTCAGCGCTTTTCATTGCCAATAAAATCTCCTACTCTGCCGTATCTAAAGAACAAATCTTTTAAATCCATTTTAACAATAAAC] [+] EMBL BI517202 [ TCGTCGGGAAATCACGAAGTCACGAAGAGATGCGATTGAAAAATATAGTTCGGTGTTGCAGTTTCTTTCAGAATTTGGATCTTTTCTTTTCATGATTAATCAGGAGAGTAGTCATTAAGAGTAATTCGTTCTGTCTTCAGAAAAGTCTATCCATCTTTTTAATTAGACTTCTTATTTTTATTCTTCTATTTCTTCTTTCCTCCCTCGAATATTGTAATACAATTTATGCTAAAAACAAGAAATTAAGTTAGTAAAGAAATATAATATATTAGAAAGATCGATTACAAGTAACCGGAAGTATAGATCTTGCTCTTTGGATCTAAAGGATATTGGTACCGAGTATTAACATTTCCTTGTTAATTTCGTCGAGGTTAAAAGGAAACAATTAATACTTAGAAGTATCCTTAGCTAATTCTATTAATTAATTATCTAAATTATCTTATTACCTTCTTCAGCGCTTTTCATTGCCAATAAAATCTCCTACTCTGCCGTATCTAAAGAA ] consensusID : consensus_1129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [AATCGACATCGGTATCCGTATCTAAAGAACAAATCTTTTAAATCCATTTTAACAATAAACAAATATAATCAATTTAACAAACTTAACCCAACGAAATTACATATTTGATAATTTTCCCGAGCTATATTTACATAATCGTCAATCTCCTGGTGCAAATTTTTCACGTAAAAAAAAAATAAAAAAAAA] [+] EMBL BI510112 [AATCGACATCGGTATCCGTATCTAAAGAACAAATCTTTTAAATCCATTTTAACAATAAACAAATATAATCAATTTAACAAACTTAACCCAACGAAATTACATATTTGATAATTTTCCCGAGCTATATTTACATAATCGTCAATCTCCTGGTGCAAATTTTTCACGTAAAAAAAAAATAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1129#0 GTCCGAAGTCGTCGGGAAATCACGAAGTCACGAAGAGATGCGATTGAAAAATATAGTTCG 60 consensus_1129#1 ------------------------------------------------------------ consensus_1129#0 GTGTTGCAGTTTCTTTCAGAATTTGGATCTTTTCTTTTCATGATTAATCAGGAGAGTAGT 120 consensus_1129#1 ------------------------------------------------------------ consensus_1129#0 CATTAAGAGTAATTCGTTCTGTCTTCAGAAAAGTCTATCCATCTTTTTAATTAGACTTCT 180 consensus_1129#1 ------------------------------------------------------------ consensus_1129#0 TATTTTTATTCTTCTATTTCTTCTTTCCTCCCTCGAATATTGTAATACAATTTATGCTAA 240 consensus_1129#1 ----------------AATCGACATCGGTATC-CGTAT-CTAAAGAACAAATC-TTTTAA 41 ** * * * * ** ** * * **** * * *** consensus_1129#0 AAACAAGAAATTAAGTTAGTAAAGAAATATAATATATTAGAAAGATCGATTACAAGTAAC 300 consensus_1129#1 ATCCA-----TTTTAACAATAAACAAATATAATCAATTTAACAAACTTAACCCAA----- 91 * ** ** * **** ********* *** * * * * *** consensus_1129#0 CGGAAGTATAGATCTTGCTCTTTGGATCTAAAGGATATTGGTACCGAGTATTAACATTTC 360 consensus_1129#1 CGAAATTACATATTTGATAATTTT--CCCGAGCTATATTTACAT-AATCGTCAATCTCCT 148 ** ** ** * ** * *** * * ***** * * * ** * consensus_1129#0 CTTGTTAATTTCGTCGAGGTTAAAAGGAAACAATTAATACTTAGAAGTATCCTTAGCTAA 420 consensus_1129#1 GGTGCAAATTT--TTCACGTAAAAAAAAAATAAAAAAAAA-------------------- 186 ** ***** * * ** **** *** ** ** * consensus_1129#0 TTCTATTAATTAATTATCTAAATTATCTTATTACCTTCTTCAGCGCTTTTCATTGCCAAT 480 consensus_1129#1 ------------------------------------------------------------ consensus_1129#0 AAAATCTCCTACTCTGCCGTATCTAAAGAACAAATCTTTTAAATCCATTTTAACAATAAA 540 consensus_1129#1 ------------------------------------------------------------ consensus_1129#0 C 541 consensus_1129#1 - |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |