These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [TAGTTAGTGAAAAACTTGAAAAACCTTCTCAAGCTGACTTGATTGCAAAATCTGATAATGATATATTAGCAAAAATTAATAAACTACTGAGTGGTGTACCACCACCACCTAAACTTACAATTTGTAGAATAGATTGCTCAGAATTATTATTACGTATTTATGAGAATCAACATTTATTTTGGACACCATGTGTATTACCAGAAAAATATATACAACAAGATCTAAATAGAGAACAACAAAAAGAAAATATTAGTACAAATAATTATCGTCATATCAAAAGCACATCTAGAAATTTAAGTACAGCTTTTGATGCTTGTGATCCACAATATCAAAGTAATATTAGTAATAATATAGATACAGTAGATTTAAAAAATATTTGCAGTGATAATTTTAGAATAAAGAAAGCAGTTCCTAACAATGAGCAAGTACAAGCAACTACAACTGTAAACAAGGTAAAACAAGAATCAGTTGTAATTGCACCACAACAATCATTACTTTATTTTACTATTAATGAAAAAAATGTTAATACTTTGACATGGCCTGAAGCATATTATCATAAATTTCATGG] [+] EMBL BE844593 [TAGTTAGTGAAAAACTTGAAAAACCTTCTCAAGCTGACTTGATTGCAAAATCTGATAATGATATATTAGCAAAAATTAATAAACTACTGAGTGGTGTACCACCACCACCTAAACTTACAATTTGTAGAATAGATTGCTCAGAATTATTATTACGTATTTATGAGAATCAACATTTATTTTGGACACCATGTGTATTACCAGAAAAATATATACAACAAGATCTAAATAGAGAACAACAAAAAGAAAATATTAGTACAAATAATTATCGTCATATCAAAAGCACATCTAGAAATTTAAGTACAGCTTTTGATGCTTGTGATCCACAATATCAAAGTAATATTAGTAATAATATAGATACAGTAGATTTAAAAAATATTTGCAGTGATAATTTTAGAATAAAGAAAGCAGTTCCTAACAATGAGCAAGTACAAGCAACTACAACTGTAAACAAGGTAAAACAAGAATCAGTTGTAATTGCACCACAACAATCATTACTTTATTTTACTATTAATGAAAAAAATGTTAATACTTTGACATGGCCTGAAGCATATTATCATAAATTTCATGG] consensusID : consensus_1162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [ACTGTAAACAAGGTAAAACAAGAATCAGTTGTAATTGCACCACAACAATCATTACTTTATTTTACTATTAATGAAAAAAATGTTAATACTTTGACATGGCCTGAAGCATATTATCATAAATTTCATGGAATACATTATAACAGAAATAAAGCAGTTGAAGAATTTGAAAGCCTTACATCAAAATTGTGTAGTAGGTATATAGGAGCTGAAACTCAATCTACATGTACTGTATGGTTTTCTAAACCAGCACCAGGAAGTGCTAAAAAACGAAATCTTTTAGCTAATCGAAATAATGGTCAAAGTCCAGGAAAAAGATTAAGTCATTTAACAAAGAGACGAAAAGTATTCTCTAGTGCGAATTTACAAGGATTAGCTCTTAATAATAAAAAACTCTTAGTATTAAATATTAAAAAACCTACAATTAAAAAAGGCAAAAGTCCGCGAGGTAAAAGTCCACGGGGCAAAAGTCCAAGGGGAACTCCTAGAAGTTCAACAAAGAAAAAAGTGGCTCGACGACTTATTTTAGATGGATCTAATCCATTAAAATCTAAGATTGAAACATCTAA] [-] EMBL BE844592 [ACTGTAAACAAGGTAAAACAAGAATCAGTTGTAATTGCACCACAACAATCATTACTTTATTTTACTATTAATGAAAAAAATGTTAATACTTTGACATGGCCTGAAGCATATTATCATAAATTTCATGGAATACATTATAACAGAAATAAAGCAGTTGAAGAATTTGAAAGCCTTACATCAAAATTGTGTAGTAGGTATATAGGAGCTGAAACTCAATCTACATGTACTGTATGGTTTTCTAAACCAGCACCAGGAAGTGCTAAAAAACGAAATCTTTTAGCTAATCGAAATAATGGTCAAAGTCCAGGAAAAAGATTAAGTCATTTAACAAAGAGACGAAAAGTATTCTCTAGTGCGAATTTACAAGGATTAGCTCTTAATAATAAAAAACTCTTAGTATTAAATATTAAAAAACCTACAATTAAAAAAGGCAAAAGTCCGCGAGGTAAAAGTCCACGGGGCAAAAGTCCAAGGGGAACTCCTAGAAGTTCAACAAAGAAAAAAGTGGCTCGACGACTTATTTTAGATGGATCTAATCCATTAAAATCTAAGATTGAAACATCTAA] consensusID : consensus_1162#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [TTTTGCCCCGTGGACTTTTACCTCGCGGACTTTTGCCTTTTTTAATTGTAGGTTTTCTACACATAAAAAAAAAAAAGATAAATTTATATTTAATAAGTTTTAAATTAATAAAATCTTTTCAAAATATATTTCACAACTTTGATACGTACTTAATATTTAATACTAAGAGTTTTTTATTATTAAGAGCTAATCCTTGTAAATTCGCACTAGNGAATACTTTTCGTCTCTTTGTTAAATGACTTAATCTTTTTCCTGGACTTTGACCATTATTTCGATTAGCTAAAAGATTTCGTTTTTTAGCACTTCCTGNNNCTGGTTTAGAAAACCATACAGTACATGTAGATTGAGTTTCAGCTCCTATATACCTACTACACAATTTTGATGTAAGNNTTTCAAATTCTTCAACTGCTTTATTTCTGTTATAACTAAAACCACAAAAGTATTATTATGTATCTTTATACAGATATTATAAATTATATATATA] [+] EMBL BI516580 [TTTTGCCCCGTGGACTTTTACCTCGCGGACTTTTGCCTTTTTTAATTGTAGGTTTTCTACACATAAAAAAAAAAAAGATAAATTTATATTTAATAAGTTTTAAATTAATAAAATCTTTTCAAAATATATTTCACAACTTTGATACGTACTTAATATTTAATACTAAGAGTTTTTTATTATTAAGAGCTAATCCTTGTAAATTCGCACTAGNGAATACTTTTCGTCTCTTTGTTAAATGACTTAATCTTTTTCCTGGACTTTGACCATTATTTCGATTAGCTAAAAGATTTCGTTTTTTAGCACTTCCTGNNNCTGGTTTAGAAAACCATACAGTACATGTAGATTGAGTTTCAGCTCCTATATACCTACTACACAATTTTGATGTAAGNNTTTCAAATTCTTCAACTGCTTTATTTCTGTTATAACTAAAACCACAAAAGTATTATTATGTATCTTTATACAGATATTATAAATTATATATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1162#0 TAGTTAGTGAAAAACTTGAAAAACCTTCTCAAGCTGACTTGATTGCAAAATCTGATAATG 60 consensus_1162#1 ---ACTGTAAACAAGGTAAAACAAGAATCAGTTGTAATTGCACCACAACAATC-ATTACT 56 consensus_1162#2 ------------------------------------------------------------ consensus_1162#0 ATATATTAGCAAAAATTAATAAACTACTGAG----TGGTGTA-CCACCACCACCTAAACT 115 consensus_1162#1 TTATTTTACTATTAATGAAAAAAATGTTAATACTTTGACATGGCCTGAAGCATATTATCA 116 consensus_1162#2 --------------------------------------------TTTTGCCCCGTGGACT 16 * * * consensus_1162#0 TACAATTTGTAGAATAGATTGCT-CAGAATTA---TTATTACGTATTTATGAGAATCAAC 171 consensus_1162#1 TAAATTTCATGGAATACATTATAACAGAAATAAAGCAGTTGAAGAATTTGAAAGCCTTAC 176 consensus_1162#2 TTTACCTCGCGGACTTTTGCCTTTTTTAATTGTAGGTTTTCTACACATAAAAAAAAAAAA 76 * * * ** * ** * ** * * * * consensus_1162#0 ATTTATTTTGGAC--ACCATGTGTATTACCAGAAAAATATATACAACAAGATCTAAATAG 229 consensus_1162#1 ATCAAAATTGTGT--AGTAGGTATATAGGAGCTGAAACTCAATCTACATGTACTGTATGG 234 consensus_1162#2 GATAAATTTATATTTAATAAGTTTTAAATTAATAAAATCTTTTCAAAATATATTTCACAA 136 * ** * * ** * *** * * * * * consensus_1162#0 A-----GAACAACAAAAAGAAAATATTAGTACAAATAAT-TATCGTCATATCAAAAGCAC 283 consensus_1162#1 TTTTCTAAACCAGCACCAGGAAGTGCTAAAAAACGAAATCTTTTAGCTAATCGAAATAAT 294 consensus_1162#2 CTTT---GATACGTACTTAATATT--TAATACTAAGAGTTTTTTATTATTAAGAGCTAAT 191 * * * * ** * * * * * * * consensus_1162#0 ATCTAGAAATT-----TAAGTACAGCTTTTGATGCTTGTGATCCACAATATCAAAGTAAT 338 consensus_1162#1 GGTCA-AAGTC-----CAGGAAAAAGATTAAGT-CATTTAACAAAGAGACGAAAAGTATT 347 consensus_1162#2 CCTTGTAAATTCGCACTAGNGAATACTTTTCGTCTCTTTGTTAAATGACTTAATCTTTTT 251 ** * * * ** * * * * * * * consensus_1162#0 AT-TAGTAATAAT--ATAGATACAGTAGATTTAAAAAATATTT-----GCAGTGATAATT 390 consensus_1162#1 CTCTAGTGCGAAT--TTACAAGGATTAGCTCTTAATAATAAA------AAACTCTTAGTA 399 consensus_1162#2 CCTGGACTTTGACCATTATTTCGATTAGCTAAAAGATTTCGTTTTTTAGCACTTCCTGNN 311 * ** * *** * * * * * consensus_1162#0 TTAGA-ATAAAGAAAGCAGTTCCTAACAATGAGCAAGTACAAGCAACTACAACTGTAAAC 449 consensus_1162#1 TTAAATATTAAAAAACCTACAATTAA-AAAAGGCAAAAGTCCGCGAG-GTAAAAGTCCAC 457 consensus_1162#2 NCTGGTTTAGAAAACCATACAGTACATGTAGATTGAGTTTCAGCTCC--TATATACCTAC 369 * * ** * * ** * ** consensus_1162#0 AAGGTAAAA---CAAGAATCAGTTGTAATTGCACCACAACAATCATTACTTTATTTTACT 506 consensus_1162#1 GGGGCAAAAGTCCAAGGGGAACTCCTAGAAGTTCAACAAAGA--AAAAAGTGGCTCGACG 515 consensus_1162#2 TACACAATTTTGATGTAAGNNTTTCAAATTCTTCAACTGC-----TTTATTTCTGTTATA 424 ** * * * ** * * consensus_1162#0 ATTAATGAAAAAAATGT-TAATACTTTGACAT---GGCCTGAAGCATATTATCATAAATT 562 consensus_1162#1 ACTTATTTTAGATGGATCTAATCCATTAAAATCTAAGATTGAAACATCTAA--------- 566 consensus_1162#2 ACTAAAACCACAAAAGTATTATTATGTATCTTT--ATACAGATATTATAAATTATATATA 482 * * * * * * * ** * * ** * consensus_1162#0 TCATGG 568 consensus_1162#1 ------ consensus_1162#2 TA---- 484 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |