These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 507 fasta sequence [GCGGCCGCGTTGCTTTTTTTCGAGATACATTCCGTGACAAGATTTTTTCTTTCATATCGAAATATCGTGATAATCAACTTTTTAACTTTCAAATTGTTTTCAATCAATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAATTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTGTCACGTACCTACGCTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATTTCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTCCATCGCTGATCACCCGCTGTGTATCACGCATCCCCACAGCTATATATATATGTGTCCAACACACTTGTAGCTTTCGCATACAATTTCTTCCCGTAATTTTCCGATCAACAATCTGTGCATATATATATCGCGCACACATGGTTTGCTTTCAGCCTTGGAAAAAAAAAAAAAAAAA] [+] EMBL BI506700 [GCGGCCGCGTTGCTTTTTTTCGAGATACATTCCGTGACAAGATTTTTTCTTTCATATCGAAATATCGTGATAATCAACTTTTTAACTTTCAAATTGTTTTCAATCAATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAATTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTGTCACGTACCTACGCTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATTTCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTCCATCGCTGATCACCCGCTGTGTATCACGCATCCCCACAGCTATATATATATGTGTCCAACACACTTGTAGCTTTCGCATACAATTTCTTCCCGTAATTTTCCGATCAACAATCTGTGCATATATATATCGCGCACACATGGTTTGCTTTCAGCCTTGGAAAAAAAAAAAAAAAAA] [+] EMBL BI507809 [GCGGCCGCGTTGCTTTTTTTCGAGATACATTCCGTGACAAGATTTTTTCTTTCATATCGAAATATCGTGATAATCAACTTTTTAACTTTCAAATTGTTTTCAATCAATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAATTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTGTCACGTACCTACGCTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATTTCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTCCATCGCTGATCACCCGCTGTGTATCACGCATCCCCACAGCTATATATATATGTGTCCAACACACTTGTAGCTTTCGCATACAATTTCTTCCCGTAATTTTCCGATCAACAATCTGTGCATATAT ] consensusID : consensus_1168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [TTCCGCTACGAAAAGCCACCTGTGAATCTATCTCGCAAATATTATACTACGAGAGAATCACTAAAAAAAAAAAAATCGATTTAGCGTTGAAATTCGTTTTATTCCCCGATATATTATTTTAAAATATATATATAAATTGAAAATAAACTTTTTTTCGAGATACATTCCGTGACAAGATTTTTTCTTTCATATCGAAATATCGGGATAATCAACTTTTTAACTTTCAAATTNNNTTCAATCAATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAATTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTNTCACGTACCTACGCTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATTTCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTC] [+] EMBL BI509644 [TTCCGCTACGAAAAGCCACCTGTGAATCTATCTCGCAAATATTATACTACGAGAGAATCACTAAAAAAAAAAAAATCGATTTAGCGTTGAAATTCGTTTTATTCCCCGATATATTATTTTAAAATATATATATAAATTGAAAATAAACTTTTTTTCGAGATACATTCCGTGACAAGATTTTTTCTTTCATATCGAAATATCGGGATAATCAACTTTTTAACTTTCAAATTNNNTTCAATCAATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAATTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTNTCACGTACCTACGCTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATTTCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1168#0 ------------------------------------------------------------ consensus_1168#1 TTCCGCTACGAAAAGCCACCTGTGAATCTATCTCGCAAATATTATACTACGAGAGAATCA 60 consensus_1168#0 ------------------------------------------------------------ consensus_1168#1 CTAAAAAAAAAAAAATCGATTTAGCGTTGAAATTCGTTTTATTCCCCGATATATTATTTT 120 consensus_1168#0 ---------------GCGGCCGCGTTGCTTTTTTTCGAGATACATTCCGTGACAAGATTT 45 consensus_1168#1 AAAATATATATATAAATTGAAAATAAACTTTTTTTCGAGATACATTCCGTGACAAGATTT 180 * ********************************* consensus_1168#0 TTTCTTTCATATCGAAATATCGTGATAATCAACTTTTTAACTTTCAAATTGTTTTCAATC 105 consensus_1168#1 TTTCTTTCATATCGAAATATCGGGATAATCAACTTTTTAACTTTCAAATTNNNTTCAATC 240 ********************** *************************** ******* consensus_1168#0 AATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAA 165 consensus_1168#1 AATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAA 300 ************************************************************ consensus_1168#0 TTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTGTCACGTACCTACG 225 consensus_1168#1 TTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTNTCACGTACCTACG 360 ********************************************** ************* consensus_1168#0 CTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATT 285 consensus_1168#1 CTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATT 420 ************************************************************ consensus_1168#0 TCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTCCATCGCTGATCAC 345 consensus_1168#1 TCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTC------------- 467 *********************************************** consensus_1168#0 CCGCTGTGTATCACGCATCCCCACAGCTATATATATATGTGTCCAACACACTTGTAGCTT 405 consensus_1168#1 ------------------------------------------------------------ consensus_1168#0 TCGCATACAATTTCTTCCCGTAATTTTCCGATCAACAATCTGTGCATATATATATCGCGC 465 consensus_1168#1 ------------------------------------------------------------ consensus_1168#0 ACACATGGTTTGCTTTCAGCCTTGGAAAAAAAAAAAAAAAAA 507 consensus_1168#1 ------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |