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Apis mellifera
cluster # 1168 cluster # 1168       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1168#0 length = 507 sequences # 2  
consensus_1168#1 length = 467 sequences # 1  

consensusID : consensus_1168#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 507
fasta sequence
                              [GCGGCCGCGTTGCTTTTTTTCGAGATACATTCCGTGACAAGATTTTTTCTTTCATATCGAAATATCGTGATAATCAACTTTTTAACTTTCAAATTGTTTTCAATCAATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAATTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTGTCACGTACCTACGCTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATTTCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTCCATCGCTGATCACCCGCTGTGTATCACGCATCCCCACAGCTATATATATATGTGTCCAACACACTTGTAGCTTTCGCATACAATTTCTTCCCGTAATTTTCCGATCAACAATCTGTGCATATATATATCGCGCACACATGGTTTGCTTTCAGCCTTGGAAAAAAAAAAAAAAAAA]

[+] EMBL BI506700             [GCGGCCGCGTTGCTTTTTTTCGAGATACATTCCGTGACAAGATTTTTTCTTTCATATCGAAATATCGTGATAATCAACTTTTTAACTTTCAAATTGTTTTCAATCAATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAATTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTGTCACGTACCTACGCTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATTTCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTCCATCGCTGATCACCCGCTGTGTATCACGCATCCCCACAGCTATATATATATGTGTCCAACACACTTGTAGCTTTCGCATACAATTTCTTCCCGTAATTTTCCGATCAACAATCTGTGCATATATATATCGCGCACACATGGTTTGCTTTCAGCCTTGGAAAAAAAAAAAAAAAAA]
[+] EMBL BI507809             [GCGGCCGCGTTGCTTTTTTTCGAGATACATTCCGTGACAAGATTTTTTCTTTCATATCGAAATATCGTGATAATCAACTTTTTAACTTTCAAATTGTTTTCAATCAATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAATTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTGTCACGTACCTACGCTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATTTCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTCCATCGCTGATCACCCGCTGTGTATCACGCATCCCCACAGCTATATATATATGTGTCCAACACACTTGTAGCTTTCGCATACAATTTCTTCCCGTAATTTTCCGATCAACAATCTGTGCATATAT                                                   ]


>consensus_1168#0 GCGGCCGCGTTGCTTTTTTTCGAGATACATTCCGTGACAAGATTTTTTCTTTCATATCGA AATATCGTGATAATCAACTTTTTAACTTTCAAATTGTTTTCAATCAATTTTTCATTTCGA AATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAATTCCATTTACAAAAA CCTTCAATTATTTAAAATTCTCTTCTTTCGTGTCACGTACCTACGCTTCTTTTCATCTCT TTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATTTCAATCTATCCAAAA AAAGACTGAATCAAAAGATATCGCAGTCGTTCCATCGCTGATCACCCGCTGTGTATCACG CATCCCCACAGCTATATATATATGTGTCCAACACACTTGTAGCTTTCGCATACAATTTCT TCCCGTAATTTTCCGATCAACAATCTGTGCATATATATATCGCGCACACATGGTTTGCTT TCAGCCTTGGAAAAAAAAAAAAAAAAA



consensusID : consensus_1168#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence
                              [TTCCGCTACGAAAAGCCACCTGTGAATCTATCTCGCAAATATTATACTACGAGAGAATCACTAAAAAAAAAAAAATCGATTTAGCGTTGAAATTCGTTTTATTCCCCGATATATTATTTTAAAATATATATATAAATTGAAAATAAACTTTTTTTCGAGATACATTCCGTGACAAGATTTTTTCTTTCATATCGAAATATCGGGATAATCAACTTTTTAACTTTCAAATTNNNTTCAATCAATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAATTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTNTCACGTACCTACGCTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATTTCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTC]

[+] EMBL BI509644             [TTCCGCTACGAAAAGCCACCTGTGAATCTATCTCGCAAATATTATACTACGAGAGAATCACTAAAAAAAAAAAAATCGATTTAGCGTTGAAATTCGTTTTATTCCCCGATATATTATTTTAAAATATATATATAAATTGAAAATAAACTTTTTTTCGAGATACATTCCGTGACAAGATTTTTTCTTTCATATCGAAATATCGGGATAATCAACTTTTTAACTTTCAAATTNNNTTCAATCAATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAATTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTNTCACGTACCTACGCTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATTTCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTC]


>consensus_1168#1 TTCCGCTACGAAAAGCCACCTGTGAATCTATCTCGCAAATATTATACTACGAGAGAATCA CTAAAAAAAAAAAAATCGATTTAGCGTTGAAATTCGTTTTATTCCCCGATATATTATTTT AAAATATATATATAAATTGAAAATAAACTTTTTTTCGAGATACATTCCGTGACAAGATTT TTTCTTTCATATCGAAATATCGGGATAATCAACTTTTTAACTTTCAAATTNNNTTCAATC AATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAA TTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTNTCACGTACCTACG CTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATT TCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1168#0      ------------------------------------------------------------
consensus_1168#1      TTCCGCTACGAAAAGCCACCTGTGAATCTATCTCGCAAATATTATACTACGAGAGAATCA 60
                                                                                  

consensus_1168#0      ------------------------------------------------------------
consensus_1168#1      CTAAAAAAAAAAAAATCGATTTAGCGTTGAAATTCGTTTTATTCCCCGATATATTATTTT 120
                                                                                  

consensus_1168#0      ---------------GCGGCCGCGTTGCTTTTTTTCGAGATACATTCCGTGACAAGATTT 45
consensus_1168#1      AAAATATATATATAAATTGAAAATAAACTTTTTTTCGAGATACATTCCGTGACAAGATTT 180
                                        *        *********************************

consensus_1168#0      TTTCTTTCATATCGAAATATCGTGATAATCAACTTTTTAACTTTCAAATTGTTTTCAATC 105
consensus_1168#1      TTTCTTTCATATCGAAATATCGGGATAATCAACTTTTTAACTTTCAAATTNNNTTCAATC 240
                      ********************** ***************************   *******

consensus_1168#0      AATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAA 165
consensus_1168#1      AATTTTTCATTTCGAAATTATTTCAGTCGTTGCCAAGAACTTTAGACTCCTGGTTAACAA 300
                      ************************************************************

consensus_1168#0      TTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTGTCACGTACCTACG 225
consensus_1168#1      TTCCATTTACAAAAACCTTCAATTATTTAAAATTCTCTTCTTTCGTNTCACGTACCTACG 360
                      ********************************************** *************

consensus_1168#0      CTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATT 285
consensus_1168#1      CTTCTTTTCATCTCTTTCGAGAAAGCTTTTACACAACACAATTATTATTCCAAGCTAATT 420
                      ************************************************************

consensus_1168#0      TCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTCCATCGCTGATCAC 345
consensus_1168#1      TCAATCTATCCAAAAAAAGACTGAATCAAAAGATATCGCAGTCGTTC------------- 467
                      ***********************************************             

consensus_1168#0      CCGCTGTGTATCACGCATCCCCACAGCTATATATATATGTGTCCAACACACTTGTAGCTT 405
consensus_1168#1      ------------------------------------------------------------
                                                                                  

consensus_1168#0      TCGCATACAATTTCTTCCCGTAATTTTCCGATCAACAATCTGTGCATATATATATCGCGC 465
consensus_1168#1      ------------------------------------------------------------
                                                                                  

consensus_1168#0      ACACATGGTTTGCTTTCAGCCTTGGAAAAAAAAAAAAAAAAA 507
consensus_1168#1      ------------------------------------------
                                                                




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)