These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1112 fasta sequence [GTAAATTAATCGATTCAATAAATTTTATCAAAATAATATTAGAATATGTGTATAATCTTAAAGAATAAAAGAAATTTCGAATGTTAATAATAAAAAGAATAAGAATTGGTAGATTTTGATTTATATGCTGTTTCGTAGGTGAAATGTGTAATTTTCGTTGTAAGTATAGAAACAAAAAAATCATCGTTTTCAATTTAATCATAATAATTAATAAAACAATTAAATTATCATATAATATATAATTTTTATGAATAAAATGATTCTATACGTTAAAATTATCGAATTGACCAAATTGTACGTCGTACTTTTAGGTTAAATGATTCTATACAGTACAATATAATTGGCTATATTCAATCTTATAAAACATGATTTTTTTGCTTTTTGTATTGTAATTAGATTGTTTATATATAACATAAATAAATTAATTAATTTCACTTCTAGAATAAATCATAGCAAATGGAAGATTTTAAAGTGAAAGATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAAACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGACTACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCATCAAAATTGGACAGCACAAATTGCAAATACAAATTTGTGTGATAAAGAAGATGGTGCTATGCAAAGGTGCTTAACAAATGCAAATTTTGCTCAAGTACATGATGTAGAAAAACATTCTGGATTTTGTCCAAATGGACAGCAACCAAAATTTTATAAAATACAATGTTCAATTTGCAAAAAATGGTTTTTAAACAATGATTCTATGGTTACTCACCTGAGAATGCACTGTAGTGGAAATCAGTGTGAAGTTTGTCAACAAAATTTTCAGGATAATTCCAGTTTACATGCTCATATGCTGACTCATGTTGGGATGAGTCNATTGGAATGCAACATCTG] [+] EMBL BE844387 [GTAAATTAATCGATTCAATAAATTTTATCAAAATAATATTAGAATATGTGTATAATCTTAAAGAATAAAAGAAATTTCGAATGTTAATAATAAAAAGAATAAGAATTGGTAGATTTTGATTTATATGCTGTTTCGTAGGTGAAATGTGTAATTTTCGTTGTAAGTATAGAAACAAAAAAATCATCGTTTTCAATTTAATCATAATAATTAATAAAACAATTAAATTATCATATAATATATAATTTTTATGAATAAAATGATTCTATACGTTAAAATTATCGAATTGACCAAATTGTACGTCGTACTTTTAGGTTAAATGATTCTATACAGTACAATATAATTGGCTATATTCAATCTTATAAAACATGATTTTTTTGCTTTTTGTATTGTAATTAGATTGTTTATATATAACATAAATAAATTAATTAATTTCACTTCTAGAATAAATCATAGCAAATGGAAGATTTTAAAGTGAAAGATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAAACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGA ] [+] EMBL BI506603 [ ATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAAACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGACTACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCATCAAAATTGGACAGCACAAATTGCAAATACAAATTTGTGTGATAAAGAAGATGGTGCTATGCAAAGGTGCTTAACAAATGCAAATTTTGCTCAAGTACATGATGTAGAAAAACATTCTGGATTTTGTCCAAATGGACAGCAACCAAAATTTTATAAAATACAATGTTCAATTTGCAAAAAATGGTTTTTAAACAATGATTCTATGGTTACTCACCTGAGAATGCACTGTAGTGGAAATCAGTGTGAAGTTTGTCAACAAAATTTTCAGGATAATTCCAGTTTACATGCTCATATGCTGACTCATGTTGGGATGAGTCNATTGGAATGCAACATCTG] consensusID : consensus_1193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [GATATAAAAGTAAATTAATCGATTCAATAAATTTTATCAAAATAATATTAGAATATGTGTATAATCTTAAAGAATAAAAGAAATTTCGAATGTTAATAATAAAAAGAATAAGAATTGGTAGATTTTGATTTATATGCTGTTTCGTAGGTGAAATGTGTAATTTTCGTTAATAAATCATAGCAAATGGAAGATTTTAAAGTGAAAGATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAAACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGACTACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCATCAAAATTGGACAGCACAAATTGCAAATACAAATT] [+] EMBL BI504541 [GATATAAAAGTAAATTAATCGATTCAATAAATTTTATCAAAATAATATTAGAATATGTGTATAATCTTAAAGAATAAAAGAAATTTCGAATGTTAATAATAAAAAGAATAAGAATTGGTAGATTTTGATTTATATGCTGTTTCGTAGGTGAAATGTGTAATTTTCGTTAATAAATCATAGCAAATGGAAGATTTTAAAGTGAAAGATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAAACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAGGACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGACTACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAATGAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCATCAAAATTGGACAGCACAAATTGCAAATACAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1193#0 GTAAATTAATCGATTCAATAAATTTTATCAAAATAATATTAGAATATGTGTATAATCTTA 60 consensus_1193#1 ------------------------------------------------------------ consensus_1193#0 AAGAATAAAAGAAATTTCGAATGTTAATAATAAAAAGAATAAGAATTGGTAGATTTTGAT 120 consensus_1193#1 ------------------------------------------------------------ consensus_1193#0 TTATATGCTGTTTCGTAGGTGAAATGTGTAATTTTCGTTGTAAGTATAGAAACAAAAAAA 180 consensus_1193#1 ------------------------------------------------------------ consensus_1193#0 TCATCGTTTTCAATTTAATCATAATAATTAATAAAACAATTAAATTATCATATAATATAT 240 consensus_1193#1 ------------------------------------------------------------ consensus_1193#0 AATTTTTATGAATAAAATGATTCTATACGTTAAAATTATCGAATTGACCAAATTGTA-CG 299 consensus_1193#1 ---------------------GATATAAAAGTAAATTAATCGATTCAATAAATTTTATCA 39 **** ****** *** * ***** ** * consensus_1193#0 TCGTACTTTTAGGTTAAATGATT--CTATACAGTACAATATAATTGGCTATATTCAATCT 357 consensus_1193#1 AAATAATATTAGAATATGTGTATAATCTTAAAGAATAAAAGAAATTTCGAATGTTAATAA 99 ** * **** ** ** * ** ** * ** * ** * * * * *** consensus_1193#0 TATAAAACATGATTTTTTTGCTTTTTGTATTGTAATTAGATTGTTTATATATAACATAAA 417 consensus_1193#1 TAAAAAGAATAAG------AATTGGTAGATTTTGATTTATATGCT-----GTTTCGTAGG 148 ** *** ** * ** * *** * *** ** * * * ** consensus_1193#0 TAAATTAATTAATTTCACTTCTAGAATAAATCATAGCAAATGGAAGATTTTAAAGTGAAA 477 consensus_1193#1 TGAAATGTGTAATTTTCGTT----AATAAATCATAGCAAATGGAAGATTTTAAAGTGAAA 204 * ** * ****** ** ************************************ consensus_1193#0 GATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAA 537 consensus_1193#1 GATGAACCAATGGATGCGTTAAACATAGACAGTCAGGTTATGGTAAACGTTTTCTATGAA 264 ************************************************************ consensus_1193#0 ACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAG 597 consensus_1193#1 ACAGCAGCACCATACAATACAATGCTTCCACAAGGACTCTAACTTAAACCTTACTTTAAG 324 ************************************************************ consensus_1193#0 GACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGAC 657 consensus_1193#1 GACGAAAACATTGTAAGCGTTGTACTTAAGGAAGAACCCGGCGATAGATTTGATCCAGAC 384 ************************************************************ consensus_1193#0 TACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAAT 717 consensus_1193#1 TACATGGAGGACATCTGTTCTGGGACATTCGAGAAGGTATTTTTACCTATCGAAAATAAT 444 ************************************************************ consensus_1193#0 GAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCAT 777 consensus_1193#1 GAAGTTGACTTCTCTAATGAAATGGTAAAACTCGAATTAGATGGGGAATCCAGTAGTCAT 504 ************************************************************ consensus_1193#0 CAAAATTGGACAGCACAAATTGCAAATACAAATTTGTGTGATAAAGAAGATGGTGCTATG 837 consensus_1193#1 CAAAATTGGACAGCACAAATTGCAAATACAAATT-------------------------- 538 ********************************** consensus_1193#0 CAAAGGTGCTTAACAAATGCAAATTTTGCTCAAGTACATGATGTAGAAAAACATTCTGGA 897 consensus_1193#1 ------------------------------------------------------------ consensus_1193#0 TTTTGTCCAAATGGACAGCAACCAAAATTTTATAAAATACAATGTTCAATTTGCAAAAAA 957 consensus_1193#1 ------------------------------------------------------------ consensus_1193#0 TGGTTTTTAAACAATGATTCTATGGTTACTCACCTGAGAATGCACTGTAGTGGAAATCAG 1017 consensus_1193#1 ------------------------------------------------------------ consensus_1193#0 TGTGAAGTTTGTCAACAAAATTTTCAGGATAATTCCAGTTTACATGCTCATATGCTGACT 1077 consensus_1193#1 ------------------------------------------------------------ consensus_1193#0 CATGTTGGGATGAGTCNATTGGAATGCAACATCTG 1112 consensus_1193#1 ----------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |