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Apis mellifera
cluster # 1367 cluster # 1367       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1367#0 length = 519 sequences # 1  
consensus_1367#1 length = 253 sequences # 1  

consensusID : consensus_1367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence
                              [TCGCATGAAAGCGAACGTGATATATTTCAATTTTTTCTTCGATTAACGAGAATTTCGCATCGTGTTCTTGTTTGAATTTATCGACAATTTATAATTTGCAGTGAAGAATTTACAATTTACGGCTTATGGCTTATGGCTTGCAGCTTACGGCTTACGGCTTACAGTTCACGATTGTGTAGTTCACTAATTTTCGTTTCTCGATTTTGTTAAATTTGTTAAATTCATTTTGTTTTTTTTTCTTATATACCGAATCCTACGTATTATTCTTCGATAACATGTTTTTCCTATTATATTTTTTATCAAATTTATTTCCATTTAAATTTTTTATTATTGATTAATTGTTTATTTTCAATTGGAATATTAAAGAACTGGTGAGTAATTAAAGAATGGCGAGGAATAAGCATAAAAATATTAATATATACATAAAAATATACAATTTTTTTTCGACGACATCGCAATATAGATATAGTGGAAGAATGATAACCATATACATATGTCTAGATTAACGTCTTATCTTAA]

[+] EMBL BI514618             [TCGCATGAAAGCGAACGTGATATATTTCAATTTTTTCTTCGATTAACGAGAATTTCGCATCGTGTTCTTGTTTGAATTTATCGACAATTTATAATTTGCAGTGAAGAATTTACAATTTACGGCTTATGGCTTATGGCTTGCAGCTTACGGCTTACGGCTTACAGTTCACGATTGTGTAGTTCACTAATTTTCGTTTCTCGATTTTGTTAAATTTGTTAAATTCATTTTGTTTTTTTTTCTTATATACCGAATCCTACGTATTATTCTTCGATAACATGTTTTTCCTATTATATTTTTTATCAAATTTATTTCCATTTAAATTTTTTATTATTGATTAATTGTTTATTTTCAATTGGAATATTAAAGAACTGGTGAGTAATTAAAGAATGGCGAGGAATAAGCATAAAAATATTAATATATACATAAAAATATACAATTTTTTTTCGACGACATCGCAATATAGATATAGTGGAAGAATGATAACCATATACATATGTCTAGATTAACGTCTTATCTTAA]


>consensus_1367#0 TCGCATGAAAGCGAACGTGATATATTTCAATTTTTTCTTCGATTAACGAGAATTTCGCAT CGTGTTCTTGTTTGAATTTATCGACAATTTATAATTTGCAGTGAAGAATTTACAATTTAC GGCTTATGGCTTATGGCTTGCAGCTTACGGCTTACGGCTTACAGTTCACGATTGTGTAGT TCACTAATTTTCGTTTCTCGATTTTGTTAAATTTGTTAAATTCATTTTGTTTTTTTTTCT TATATACCGAATCCTACGTATTATTCTTCGATAACATGTTTTTCCTATTATATTTTTTAT CAAATTTATTTCCATTTAAATTTTTTATTATTGATTAATTGTTTATTTTCAATTGGAATA TTAAAGAACTGGTGAGTAATTAAAGAATGGCGAGGAATAAGCATAAAAATATTAATATAT ACATAAAAATATACAATTTTTTTTCGACGACATCGCAATATAGATATAGTGGAAGAATGA TAACCATATACATATGTCTAGATTAACGTCTTATCTTAA



consensusID : consensus_1367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence
                              [GCGCCAATGTATCGAAAGCTTGAATGCATTGATGTGTATATGTGACCAGNNNNTTTTCCACCTAGGAGAAAAGTTTAGTCAGTGATGCGACGCGATTGCAGTTAGAAAGAGAAAAATGTGCACGTTTTTCGCATGAAAGCGAACGTGATATATTTCAATTTTTTCTTCGATTAACGAGAATTTCGCATCGTGTTCTTGTTTGAATTTATCGACAATTTATAATTTGCAGTGAAGAATTCAAACAAAAAAAAAA]

[+] EMBL BI506825             [GCGCCAATGTATCGAAAGCTTGAATGCATTGATGTGTATATGTGACCAGNNNNTTTTCCACCTAGGAGAAAAGTTTAGTCAGTGATGCGACGCGATTGCAGTTAGAAAGAGAAAAATGTGCACGTTTTTCGCATGAAAGCGAACGTGATATATTTCAATTTTTTCTTCGATTAACGAGAATTTCGCATCGTGTTCTTGTTTGAATTTATCGACAATTTATAATTTGCAGTGAAGAATTCAAACAAAAAAAAAA]


>consensus_1367#1 GCGCCAATGTATCGAAAGCTTGAATGCATTGATGTGTATATGTGACCAGNNNNTTTTCCA CCTAGGAGAAAAGTTTAGTCAGTGATGCGACGCGATTGCAGTTAGAAAGAGAAAAATGTG CACGTTTTTCGCATGAAAGCGAACGTGATATATTTCAATTTTTTCTTCGATTAACGAGAA TTTCGCATCGTGTTCTTGTTTGAATTTATCGACAATTTATAATTTGCAGTGAAGAATTCA AACAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1367#0      TCGCATGAAAGCGAACGTGATATATTTCAATTTTTTCTTCGATTAACGAGAATTTCGCAT 60
consensus_1367#1      ------------------------------------------------------------
                                                                                  

consensus_1367#0      CGTGTTCTTGTTTGAATTTATCGACAATTTATAATTTGCAGTGAAGAATTTACAATTTAC 120
consensus_1367#1      -------------------------------------GCGCCAATGTATCGAAAGCTTGA 23
                                                           **    * * **  * *  **  

consensus_1367#0      GGCTTATGGCTTATGGCTTGCAGCTTACGGCTTACGGCTTACAGTTCACGATTGTGTAGT 180
consensus_1367#1      -----ATGCATTGATGTGTATATGTGAC--CAGNNNNTTTTCCACCTAGGA--GAAAAGT 74
                           ***  **   *  *  *  * **  *       ** *     * **  *   ***

consensus_1367#0      TCACTAATTTTCGTTTCTCGATTTTGTTAAATTTGTTAAATTCATTTTGTTTTTTTTTCT 240
consensus_1367#1      TTAGTCAGTGATGCGACGCGATTGCAGTTAGAAAGAGAAA---AATGTGCACGTTTTTCG 131
                      * * * * *   *   * *****    * *    *  ***   * * **    ****** 

consensus_1367#0      TATATACCGAATCCTACGTATTATTCTTCGATAACATGTTTTTCCTATTATATTTTTTAT 300
consensus_1367#1      CATG----AAAGCGAACGTGATATATTTCAAT----TTTTTCTTCGATTAACGAGAATTT 183
                       **      ** *  ****  ***  *** **    * *** * * ****       * *

consensus_1367#0      CAAATT-TATTTCCATTTAAATTTTTTATTATTGATTAATTGTTTATTTTCAATTGGAAT 359
consensus_1367#1      CGCATCGTGTTCTTGTTTGAATTTATCGACAATTTATAATTTGCAGTGAAGAATTCAAAC 243
                      *  **  * **    *** ***** *    * *   *****     *    ****  ** 

consensus_1367#0      ATTAAAGAACTGGTGAGTAATTAAAGAATGGCGAGGAATAAGCATAAAAATATTAATATA 419
consensus_1367#1      AAAAAAAAAA-------------------------------------------------- 253
                      *  *** **                                                   

consensus_1367#0      TACATAAAAATATACAATTTTTTTTCGACGACATCGCAATATAGATATAGTGGAAGAATG 479
consensus_1367#1      ------------------------------------------------------------
                                                                                  

consensus_1367#0      ATAACCATATACATATGTCTAGATTAACGTCTTATCTTAA 519
consensus_1367#1      ----------------------------------------
                                                              




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)