These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 978 fasta sequence [TCGACGATTTCAAGGATCTTTGATTGATGTTTTTACTTCGTTTTTTTTTTTAAATAATCGTTGGTGCCTTTCCTCTATTTCTTTCCCTTTTTTTTTTCTCTTAATTTTTACGAACGAGCTTTTCACATGTGTGGGTATATATATATATATATATGTATATTTTATATATATATATAAAATAATATTTCTCATAGAAATACGTTATTTATATTGTAGATAGATTTACTTTTTACTGAACGTATTTTTTGTAGTACATAATGAAAGAGAAAGAGGAGGATTAATGTACGCTGTGAGTACGCGAGCGCGCAGAGTCTCGTTCGAAGCGACAAGCTCTCCGCATTTTAATTGTAATCTAACTATTTTCGGGGGTTCTGACAGACGTCGAATCTATCGCTCCCCGCAATCACTGAGCATCCTTGGTCCGGAAGAATAGAATTACGAATAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCT--TCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGATATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCCNNNTAATTAAGAAATAAAGTGTGCTCTATGTCATGCTA] [+] EMBL BI514039 [TCGACGATTTCAAGGATCTTTGATTGATGTTTTTACTTCGTTTTTTTTTTTAAATAATCGTTGGTGCCTTTCCTCTATTTCTTTCCCTTTTTTTTTTCTCTTAATTTTTACGAACGAGCTTTTCACATGTGTGGGTATATATATATATATATATGTATATTTTATATATATATATAAAATAATATTTCTCATAGAAATACGTTATTTATATTGTAGATAGATTTACTTTTTACTGAACGTATTTTTTGTAGTACATAATGAAAGAGAAAGAGGAGGATTAATGTACGCTGTGAGTACGCGAGCGCGCAGAGTCTCGTTCGAAGCGACAAGCTCTCCGCATTTTAATTGTAATCTAACTATTTTCGGGGGTTCTGACAGACGTCGAATCTATCGCTCCCCGCAATCACTGAGCATCCTTGGTCCGGAAGAATAGAATTA ] [+] EMBL BI514133 [TCGACGATTTCAAGGATCTTTGATTGATGTTTTTACTTCGTTTTTTTTTTTAAATAATCGTTGGTGCCTTTCCTCTATTTCTTTCCCTTTTTTTTTTCTCTTAATTTTTACGAACGAGCTTTTCACATGTGTGGGTATATATATATATATATATGTATATTTTATATATATATATAAAATAATATTTCTCATAGAAATACGTTATTTATATTGTAGATAGATTTACTTTTTACTGAACGTATTTTTTGTAGTACATAATGAAAGAGAAAGAGGAGGATTAATGTACGCTGTG ] [-] EMBL BI517148 [ CGCATTTTAATTGTAATCTAACTATTTTCGGGGGTTCTGACAGACGTCGAATCTATCGCTCCCCGCAATCACTGAGCATCCTTGGTCCGGAAGAATAGAATTACGAATAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAA TTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCT TCTTGATTCCCCATTATTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATAC ] [-] EMBL BI515513 [ TATCGCTCCCCGCAATCACTGAGCATCCNTGGTCCGGAAGAATAGAATTACGAATAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCT TCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGA ] [-] EMBL BI516388 [ CGAATAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAGCCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCT TCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGA ] [-] EMBL BI511839 [ CCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCTCCTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGATATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCCNNNTAATTAAGAAATAAAGTGTGCTCTATGTCATGCTA] consensusID : consensus_141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [TATTCTTCCGGACCAAGGATGCTCAGTGATTGCGATTAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCTTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGATATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCACT] [+] EMBL BI515791 [TATTCTTCCGGACCAAGGATGCTCAGTGATTGCGATTAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCTTATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGTTTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAGAAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGCTTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCGATCCCTTCCCTTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAGGGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACATTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGATATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_141#0 TCGACGATTTCAAGGATCTTTGATTGATGTTTTTACTTCGTTTTTTTTTTTAAATAATCG 60 consensus_141#1 ------------------------------------------------------------ consensus_141#0 TTGGTGCCTTTCCTCTATTTCTTTCCCTTTTTTTTTTCTCTTAATTTTTACGAACGAGCT 120 consensus_141#1 ------------------------------------------------------------ consensus_141#0 TTTCACATGTGTGGGTATATATATATATATATATGTATATTTTATATATATATATAAAAT 180 consensus_141#1 ------------------------------------------------------------ consensus_141#0 AATATTTCTCATAGAAATACGTTATTTATATTGTAGATAGATTTACTTTTTACTGAACGT 240 consensus_141#1 ------------------------------------------------------------ consensus_141#0 ATTTTTTGTAGTACATAATGAAAGAGAAAGAGGAGGATTAATGTACGCTGTGAGTACGCG 300 consensus_141#1 ------------------------------------------------------------ consensus_141#0 AGCGCGCAGAGTCTCGTTCGAAGCGACAAGCTCTCCGCATTTTAATTGTAATCTAACTAT 360 consensus_141#1 ------------------------------------------------------------ consensus_141#0 TTTCGGGGGTTCTGACAGACGTCGAATCTATCGCTCCCCGCAATCACTGAGCATCCTTGG 420 consensus_141#1 -----------------------------------------------TATTCTTCCGGAC 13 * * *** consensus_141#0 TCCGGAAGAATAG-AATTACGAATAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCT 479 consensus_141#1 CAAGGATGCTCAGTGATTGCGATTAGCTATTCTTGTTCCACCCTCCCCCGACGTATCGCT 73 *** * ** *** *** ************************************* consensus_141#0 TATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGT 539 consensus_141#1 TATTATCTCTATTATTCTTCCAACTACACGAAGCACGCTATTTTTCCCTTCCTTTCGTGT 133 ************************************************************ consensus_141#0 TTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAG 599 consensus_141#1 TTCTCGTAATTCCTGCCCACTTATATTTTGTAAGCGTTAGAATGTCCGGAATCGATCGAG 193 ************************************************************ consensus_141#0 AAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGC 659 consensus_141#1 AAACCCAAGAGGAAGCGAGGATTATATTACTTTTTTCTCTCCCTAATCATTGCACTACGC 253 ************************************************************ consensus_141#0 TTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCG 719 consensus_141#1 TTGCACTACTCGTTTCTTTTTTTTTCAATTTTTTTTTATATTTTTTTCTCTATCTTCCCG 313 ************************************************************ consensus_141#0 ATCCCTTCCCTTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAG 779 consensus_141#1 ATCCCTTCCCTTCTTGATTCCCCTTTGTTCTTCCCGTTGTTCTTGAAACGAAACGCGAAG 373 ************************************************************ consensus_141#0 GGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACA 839 consensus_141#1 GGACGACCAGTGGATGCAACGCAGTGATACTTTCAGACAATACAATTACAATTAATTACA 433 ************************************************************ consensus_141#0 TTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGA 899 consensus_141#1 TTACTTATATTATGATAAATTAATCTATTATTGAAACTCCGATCGAAGAAGAATATACGA 493 ************************************************************ consensus_141#0 TATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCCNNNTAATTAAGAAATAAAG 959 consensus_141#1 TATGTACTCGATATTCGGTCAATGCTAAATAATTATTATCACT----------------- 536 **************************************** consensus_141#0 TGTGCTCTATGTCATGCTA 978 consensus_141#1 ------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |