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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence
[CGAATCACATATAACGATACGCCACAATTTTCTACAAAGAAAGCACGTGTGTGCGCGTGTATTTGAGGCAGTATTCGACTCGAATAAATTTTTCTTTTCTCTGTTTACATTTTATCAAACTCAAAGCATAACCATATATTAAAAATCATAAACAAAAGAAATTAATATATATATATATATATATATATATAACGCATTGGAAAGATAATCTTTCTTGTCTTTCTTTCTCCCCCCCTCTCCCCCACCTTTTTTTACACTTTGCACGAACAGGTTATGCTTCAAGCGAATCTTTTTAACAAAAAAAGTATTTCTTTTTTCGACTTCTTTTCAAATCAAACATCAGACATATCAAAACTCAATCTCCATTAAAACTAAATATGCTGCTCGTCCTAAACCAGATGTGAAATTGGTTATCGAGAAATCTGTGCGAGTTCAATTCGTGTGTGTGTGGCAAAGCGACGACCCATAGCTATCTTCTTATTTCATCCGGTATAGTTTTGTATTTCGTTAGTATAGCACAACGAAAAGACGTGAGTACTTCAATCTTGTTTTTTTCTATTATGCGGCATTCGGGAAAATTCAAGGCTCATCGCGCTGCCGCTGGAGAAAGATAGCCATAGGCAGTTAGAGGGCTACAGGCAAAGTTTAGATATAGCAGGCCCTTCTTCAAATTTGACGATAAGAGGATCAACAGCTGGACTACCAATAAAACTGCCTGCTTCACTGCTTCCTCTACCTTGATCTGATTCTGTGCTACTTCCATCATATTTTGTGTCATCTTGACGATTTGGCCATTCTTGAT]
[+] EMBL BQ103831 [CGAATCACATATAACGATACGCCACAATTTTCTACAAAGAAAGCACGTGTGTGCGCGTGTATTTGAGGCAGTATTCGACTCGAATAAATTTTTCTTTTCTCTGTTTACATTTTATCAAACTCAAAGCATAACCATATATTAAAAATCATAAACAAAAGAAATTAATATATATATATATATATATATATATAACGCATTGGAAAGATAATCTTTCTTGTCTTTCTTTCTCCCCCCCTCTCCCCCACCTTTTTTTACACTTTGCACGAACAGGTTATGCTTCAAGCGAATCTTTTTAACAAAAAAAGTATTTCTTTTTTCGACTTCTTTTCAAATCAAACATCAGACATATCAAAACTCAATCTCCATTAAAACTAAATATGCTGCTCGTCCTAAACCAGATGTGAAATTGGTTATCGAGAAATCTGTGCGAGTTCAATTCGTGTGTGTGTGGCAAAGCGACGACCCATAGCTATCTTCTTATTTCATCCGGTATAGTTTTGTATTTCGTTAGTATAGCACAACGAAAAGACGTGAGTACTTCAATCTTGTTTTTTTCTATTATGCGGCATTCGGGAAAATTCAAGGCTCATCGCGCTGCCGCTGGAGAAAGATAGCCATAGGCAGTTAGAGGGCTACAGGCAAAGTTTAGATATAGCAGGCCCTTCTTCAAATTTGACGATAAGAGGATCAACAGCTGGACTACCAATAAAACTGCCTGCTTCACTGCTTCCTCTACCTTGATCTGATTCTGTGCTACTTCCATCATATTTTGTGTCATCTTGACGATTTGGCCATTCTTGAT]
consensusID : consensus_168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence
[ACCAACTTAATTATATTAATTTATATGTCTGAATGAAATAAATTAACCAAAGATCGATTAAGTATCGGAAATGTACTAACATTCCTGGTGCTCAATCAATATGAAAATCTGTGATAATTTTTACTGCAATATAGGAAGTATAACTTTATTTTTGTGTGTAAAGTATTGTATATATTTATACATTTATACAATACTTTACATCAATTTTTAGAGAACAAATTGTTTCATAGTTGTTTTATATAATTCTATATATGTTTTTCTCTCTTGTTTTAGTAGTATTTCATTAATATACTTTTTTATGCTGGTTATTGGTCAATAGAAACTTACATTGTTACAATTAAAGCATTCCTGACAACTTTAAAATCGTCTATATGACGTCATTTCGAGATATGGAAAAGGAAATCTTGATGTTTGAGGCTGAGTAGTTTGCTGAGTATGAATAGGTGAATATGATGGCTGTTGAAGGAGAGGAGAATTTTGTTGATTTTGTAAAGGAGATAGTGATTGACCAGGAGAATGTGAATGTAGATTTTGTGGATGGGAAAATGATAATGCATGATGGCAAGGAGAAGTCTGTGAATTCTGTACATTAGCTTGTGGTATATTCAAATTGTTTGTAATGTTAATATTGTTTAGTATGTTGAGACTGTTAGATACGTTATTAGGGATTGTCAAATTGCTTGGAATACTGAGTGCATTTGGAATATTTGGTAAATTATGTGGAAGGCTTGTT]
[+] EMBL BQ103830 [ACCAACTTAATTATATTAATTTATATGTCTGAATGAAATAAATTAACCAAAGATCGATTAAGTATCGGAAATGTACTAACATTCCTGGTGCTCAATCAATATGAAAATCTGTGATAATTTTTACTGCAATATAGGAAGTATAACTTTATTTTTGTGTGTAAAGTATTGTATATATTTATACATTTATACAATACTTTACATCAATTTTTAGAGAACAAATTGTTTCATAGTTGTTTTATATAATTCTATATATGTTTTTCTCTCTTGTTTTAGTAGTATTTCATTAATATACTTTTTTATGCTGGTTATTGGTCAATAGAAACTTACATTGTTACAATTAAAGCATTCCTGACAACTTTAAAATCGTCTATATGACGTCATTTCGAGATATGGAAAAGGAAATCTTGATGTTTGAGGCTGAGTAGTTTGCTGAGTATGAATAGGTGAATATGATGGCTGTTGAAGGAGAGGAGAATTTTGTTGATTTTGTAAAGGAGATAGTGATTGACCAGGAGAATGTGAATGTAGATTTTGTGGATGGGAAAATGATAATGCATGATGGCAAGGAGAAGTCTGTGAATTCTGTACATTAGCTTGTGGTATATTCAAATTGTTTGTAATGTTAATATTGTTTAGTATGTTGAGACTGTTAGATACGTTATTAGGGATTGTCAAATTGCTTGGAATACTGAGTGCATTTGGAATATTTGGTAAATTATGTGGAAGGCTTGTT]
consensusID : consensus_168#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 727 fasta sequence
[CTGTTAGATACGTTATTAGGGATTGTCAAATTGCTTGGAATACTGAGTGCATTTGGAATATTTGGTAAATTATGTGGAAGGCTTGTTGGTAAATTATGTGGAAGGCTTGTTGGTAAATTATGTGGAAGAGAAAGAGTAGCCGACGTAAGGTAATGTACGCTGAAAGATGGGGGCTAGTAAAGCCTCATACCTTCTTCAAATTTGACGATAAGAGGATCAACAGCTGGACTACCAATAAAACTGCCTGCTTCACTGCTTCCTCTACCTTGATCTGATTCTGTGCTACTTCCATCATATTTTGTGTCATCTTGACGATTTGACCATTCTTGATTCATTGTTTTTGATGTTAAGTCAAAATTTTTTACTGGATTAATAGGATCACTAGTAATTGTACGAGCATTCTTATGCATAAATGAACAATGTGGTTTTCTGCAACCTCCAGGTTGTGTTTCCCAATAACATGGAATTGATTTACGATTTTTTCTTAACTCCATGTGCCTAAAATTACAATGTTCATCAAGGCATTTACCCTGCTTCCAATATACACACATTGTTTCACAACCCAAGGCAGATGGTTCATGTCTAAATGGACAATTATCACCCTTTGTGCACGTTGAATAATAGAAAAAATAACAGTCGGTATTCTTATGACTGTGCTCCATTTGCAAGAACTGATAGAAAGATGAATGATCGTGTCCTTCAGTGTGACGGCAGTGATTTCTTAGGT]
[-] EMBL BI507149 [CTGTTAGATACGTTATTAGGGATTGTCAAATTGCTTGGAATACTGAGTGCATTTGGAATATTTGGTAAATTATGTGGAAGGCTTGTTGGTAAATTATGTGGAAGGCTTGTTGGTAAATTATGTGGAAGAGAAAGAGTAGCCGACGTAAGGTAATGTACGCTGAAAGATGGGGGCTAGTAAAGCCTCATACCTTCTTCAAATTTGACGATAAGAGGATCAACAGCTGGACTACCAATAAAACTGCCTGCTTCACTGCTTCCTCTACCTTGATCTGATTCTGTGCTACTTCCATCATATTTTGTGTCATCTTGACGATTTGACCATTCTTGATTCATTGTTTTTGATGTTAAGTCAAAATTTTTTACTGGATTAATAGGATCACTAGTAATTGTACGAGCATTCTTATGCATAAATGAACAATGTGGTTTTCTGCAACCTCCAGGTTGTGTTTCCCAATAACATGGAATTGATTTACGATTTTTTCTTAACTCCATGTGCCTAAAATTACAATGTTCATCAAGGCATTTACCCTGCTTCCAATATACACACATTGTTTCACAACCCAAGGCAGATGGTTCATGTCTAAATGGACAATTATCACCCTTTGTGCACGTTGAATAATAG ]
[-] EMBL BI503916 [ ATTGTCAAATTGCTTGGAATACTGAGTGCATTTGGAATATTTGGTAAATTATGTGGAAGGCTTGTTGGTAAATTATGTGGAAGGCTTGTTGGTAAATTATGTGGAAGAGAAAGAGTAGCCGACGTAAGGTAATGTACGCTGAAAGATGGGGGCTAGTAAAGCCTCATACCTTCTTCAAATTTGACGATAAGAGGATCAACAGCTGGACTACCAATAAAACTGCCTGCTTCACTGCTTCCTCTACCTTGATCTGATTCTGTGCTACTTCCATCATATTTTGTGTCATCTTGACGATTTGACCATTCTTGATTCATTGTTTTTGATGTTAAGTCAAAATTTTTTACTGGATTAATAGGATCACTAGTAATTGTACGAGCATTCTTATGCATAAATGAACAATGTGGTTTTCTGCAACCTCCAGGTTGTGTTTCCCAATAACATGGAATTGATTTACGATTTTTTCTTAACTCCATGTGCCTAAAATTACAATGTTCATCAAGGCATTTACCCTGCTTCCAATATACACACATTGTTTCACAACCCAAGGCAGATGGTTCATGTCTAAATGGACAATTATCACCCTTTGTGCACGTTGAATAATAGAAAAAATAACAGTCGGTATTCTTATGACTGTGCTCCATTTGCAAGAACTGATAGAAAGATGAAT ]
[-] EMBL BI515597 [ AAGAGGATCAACAGCTGGACTACCAATAAAACTGCCTGCTTCACTGCTTCCNCTACCTTGATCTGATTCTGTGCTACTTCCATCATATTTTGTGTCATCTTGACGATTTGACCATTCTTGATTCATTGTTTTTGATGTTAAGTCAAAATTTTTTACTGGATTAATAGGATCACTAGTAATTGTACGAGCATTCTTATGCATAAATGAACAATGTGGTTTTCTGCAACCTCCAGGTTGTGTTTCCCAATAACATGGAATTGATTTACGATTTTTTCTTAACTCCATGTGCCTAAAATTACAATGTTCATCAAGGCATTTACCCTGCTTCCAATATACACACATTGTTTCACAACCCAAGGCAGATGGTTCATGTCTAAATGGACAATTATCACCCTTTGTGCACGTTGAATAATAGAAAAAATAACAGTCGGTATTCTTATGACTGTGCTCCATTTGCAAGAACTGATAGAAAGATGAATGATCGTGTCCTTCAGTGTGACGGCAGTGATTTCTTAGGT]
[-] EMBL BI512614 [ TGATCTGATTCTGTGCTACTTCCATCATATTTTGTGTCATCTTGACGATTTGACCATTCTTGATTCATTGTTTTTGATGTTAAGTCAAAATTTTTTACTGGATTAATAGGATCACTAGTAATTGTACGAGCATTCTTATGCATAAATGAACAATGTGGTTTTCTGCAACCTCCAGGTTGTGTTTCCCAATAACATGGAATTGATTTACGATTTTTTCTTAACTCCATGTGCCTAAAATTACAATGTTCATCAAGGCATTTACCCTGCTTCCAATATACACACATTGTTTCACAACCCAAGGCAGATGGTTCATGTCTAAATGGACAATTATCACCCTTTGTGCACGTTGAATAATAGAAAAAATAACAGTCGGTATTCTTATGACTGTGCTCCATTTGCAAGAACTGATAGAAAGATGAATGATCGTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_168#0 CGAATCACATATAACGATACGCCACAATTTTCTACAAAGAAAGCACGTGTGTGCGCGTGT 60
consensus_168#2 ---------------------------------------------CTGTTAGATACGT-T 14
consensus_168#1 ----------------------------------------------ACCAACTTAATTAT 14
* *
consensus_168#0 ATTTGAGGCAGTATTCGACTCGAATAAATTTTTCTTTTCTCTGTTTACATTTTATCAAAC 120
consensus_168#2 ATTAGGGATTGT---CAAATTGCTTGGAATACTGAGTGCATTTGGAATATTTGGTAAATT 71
consensus_168#1 ATTAATTTATATGTCTGAATGAAATAAATTAACCAAAG-ATCGATTAAGTATCGGAAATG 73
*** * * * * * * * * * **
consensus_168#0 TCAAAGCATAACCATATATTAAAAATCATAAACAAAAGAAATTAATATATATATATATAT 180
consensus_168#2 ATGTGGAAGGCTTGTTGGT---AAATTATGTGGAAGGCTTGTTGGTAAAT-TATGTGGAA 127
consensus_168#1 TACTAACATTCCTGGTGCT---CAATCAATATGAAAATCTGT-GATAATTTTTACTGCAA 129
* * *** * ** * ** * * * *
consensus_168#0 ATATATATATAACGCATTGGAAAGATAATCTTTCTTGTCTTTCTTTCTCCCCCCCTCTCC 240
consensus_168#2 GAGAAAGAGTAGCCGAC--GTAAGGTAATGTACGCTGAAAGATGGGGGCTAGTAAAGCCT 185
consensus_168#1 TATAGGAAGTATAACTT---TATTTTTGTGTGTAAAGTATTGTATATATTTATACATTTA 186
** * * * * *
consensus_168#0 CCCACCTTTTTTTA--CACTTTGCACGAACAGGTTATGCTTCAAGCGAATCTTTTTAACA 298
consensus_168#2 CATACCTTCTTC-A--AATTTGACGATAAGAGGAT---CAACAGCTGGAC-----TACCA 234
consensus_168#1 TACAATACTTTACATCAATTTTTAGAGAACAAATTGTTTCATAGTTGTTT---TATATAA 243
* ** * * ** ** * * * * ** *
consensus_168#0 AAAAAAGTATTTCTTTTTTCGACTTCTTTTCA--AATCAAACATCAGACATATCAAAACT 356
consensus_168#2 ATAAAACTGCCTGCTTCACTGCTTCCTCTACCTTGATCTGATTCTGTGCTACTTCCATCA 294
consensus_168#1 TTCTATATATGTTTTTCTCTCTTGTTTTAGTAGTATTTCATTAATATACTTTTTTATGCT 303
* * * ** * * * * *
consensus_168#0 CAATCTCCATTAAAACTAAATATGCTGCTCGTCCTAAACCAGATGTGAA-ATTGGTTATC 415
consensus_168#2 TATTTTGTGTCAT--CTTGACGATTTGACCATTCTTGATTCATTGTTTTTGATGTTAAGT 352
consensus_168#1 GGTTATTGGTCAA---TAGAAACTTACATTGTTACAATTAAAGCATTCCTGACA--ACTT 358
* * * * * * * *
consensus_168#0 GAGAAATCTGTGCGAGTTCAATTCGTGTGTGTGTGGCAAAGCGACGACCCATAGCTATCT 475
consensus_168#2 CAAAATTTTTTACTGGATTAATAGGATCACTAGTAATTGTACGAGCATTCTTA------T 406
consensus_168#1 TAAAATCGTCTATA----TGACGTCATTTCGAGATATGGAAAAGGAAATCTTG------- 407
* ** * * * * * * *
consensus_168#0 TCTTATTTCATCCGGTATAGTTTTGTATTTCGTTAGTATAGCACAACGAAAAGACGTGAG 535
consensus_168#2 GCATAAATGAAC-AATGTGGTTTTCTGCAACCTCCAGGTTGTGTTTCCCAATAACATGG- 464
consensus_168#1 --ATGTTTGAGGCTGAGTAGTTTGCTGAG---TATGAATAGGTGAATATGATGGC-TGTT 461
* * * * **** * * * * * * **
consensus_168#0 TACTTCAATCTTGTTTTTTTCTATTATGCGGCATTCGGGAAAATTCAAGGCTCATC---G 592
consensus_168#2 -AATTGATTTACGATTTTTTCT-TAACTCCATGTGCCTAAAATTACAATGTTCATCAAGG 522
consensus_168#1 GAAGGAGAGGAGAATTTTGT---TGATTTTGTAAAGGAGATAGTG-ATTGACCAGGAGAA 517
* **** * * * * * * * * **
consensus_168#0 CGCTGCCGCTGGAGAAAG--ATAGCCATAGGCAGTTAGAGGGCTACAGGCAAA--GTTTA 648
consensus_168#2 CATTTACCCTGCTTCCA---ATATACACACATTGTTTCACAACCCAAGGCAGATGGTTCA 579
consensus_168#1 TGTGAATGTAGATTTTGTGGATGGGAAAATGATAATGCATGATGGCAAGGAGA-AGTCTG 576
* ** * * * * * * * * **
consensus_168#0 GATATAGCAGGCCCTTCTTCAAATTTGACGATAAGAGGATCAACAGCTGGACTACCAATA 708
consensus_168#2 TGTCTAAATGGACAATTATCACCCTTTGTG-CACGTTGAATAATAGAAAAAATAACAGTC 638
consensus_168#1 TGAATT-CTGTACA-TTAGCTTGTGGTATATTCAAATTGTTTGTAATGTTAATATTGTTT 634
* * * * * * * ** *
consensus_168#0 AAACTGCCTGCTTCACTGCTTCCTCTACCTTGATCTGATTCTGTGCTACTTCCATCATAT 768
consensus_168#2 GGTATTCTTATGACTGTGCTCCATTTGCAA-GAACTGATAGAAAGATGAATG-ATCGTGT 696
consensus_168#1 AGTATGTTGAGACTGTTAGATACGTTATTAGGGATTGTCAAATTGCTTGGAATACTGAGT 694
* * * * ** * * * *
consensus_168#0 TTTGTGTCATCTTGACGATTTGGCCATTCTTGAT----- 802
consensus_168#2 CCT---TCAGTGTGACGGCAGTGATTTCTTAGGT----- 727
consensus_168#1 GCATTTGGAATATTTGGTAAATTATGTGGAAGGCTTGTT 733
* * * * *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |