These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_172#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [GCATATATATACACACACATACACATATATAGATTACACATATACGTATATACAATTGTCATACCGCTGCAGCTGTTCTCGAATAACGAACTCTTTGCCTGCCGATTTTTCGTGTTCCCTTTTGTTCGCGTATTTGAAAAAAGAACCAGCCAGTGTGTTCTTCGTTCCCCTTAGCTTCTTCGTTCGCGCTTAAAAATAATTCTGCCTTCCTTAATTAAAATTTCTTGTCTTGCATTTTTTTTTAAATTTTTCAACATAAGTATTGAAAAGTATTTTAAATTCTGTATTTAATTGTTCTTTAATATACTTTCAAATAAAGTTAAAAAGTTCCATTTGATTGCACTTTAGAGATATGAAATTTATATTATTCTAAGAATATATTTTTTTCAAGTATATTAGAAATAAGATATTTTAATTGAGGAGGTAAGATTAATTATTCTTGGATCTTCTTTGTAGATATATTTGTACGGATAGATAGATTTCCTTTCTTTTCTAATGTTTTATGCGGAAAGAGAGTGATAGATTTTTGTGCAAAAGTGGAGTAGGATTTGTACGTAAATAGTGGCNTCGACAGGGAAAGACAGGAAAAATCGGCATCGAGCGAGGGA] [+] EMBL BI507399 [GCATATATATACACACACATACACATATATAGATTACACATATACGTATATACAATTGTCATACCGCTGCAGCTGTTCTCGAATAACGAACTCTTTGCCTGCCGATTTTTCGTGTTCCCTTTTGTTCGCGTATTTGAAAAAAGAACCAGCCAGTGTGTTCTTCGTTCCCCTTAGCTTCTTCGTTCGCGCTTAAAAATAATTCTGCCTTCCTTAATTAAAATTTCTTGTCTTGCATTTTTTTTTAAATTTTTCAACATAAGTATTGAAAAGTATTTTAAATTCTGTATTTAATTGTTCTTTAATATACTTTCAAATAAAGTTAAAAAGTTCCATTTGATTGCACTTTAGAGATATGAAATTTATATTATTCTAAGAATATATTTTTTTCAAGTATATTAGAAATAAGATATTTTAATTGAGGAGGTAAGATTAATTATTCTTGGATCTTCTTTGTAGATATATTTGTACGGATAGATAGATTTCCTTTCTTTTCTAATGTTTTATGCGGAAAGAGAGTGATAGATTTTTGTGCAAAAGTGGAGTAGGATTTGTACGTAAATAGTGGCNTCGACAGGGAAAGACAGGAAAAATCGGCATCGAGCGAGGGA] consensusID : consensus_172#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 603 fasta sequence [AAGAGGAAGAGATAAAATCGCGGACTGATTAATTACGTGTGCCAAATCGTCGTTACACAGACACATACGTACGTATATACATGCATATATATATACACACACATACACATATATAGATTACACATATACGTATATACAATTGTCATACCGCTGCAGCTGTTCTCGAATAGCGAACTCTTTGCCTGCCGATTTTTCGTGTTCCCTTTTGTTCGCGTATTTGAAAAAAGAACCAGCCAGTGTGTTCTTCGTTCCCTTTAGCTTCTTCGTTCGCGCTTAAAAATAATTCTGCCTTCCTTAATTAAAATTTCTTGTCTTGCATTTTTTTTTGCAAATTTTCCAACATAAGTATTGAAGTATTTTAAATTCTGTTTAATTGTTTTTTCAAATAAAGTTAAAAAGTTTTGATTGCTCTTTAGAGATATGAAATTTATATTATTCTAAGAATATATCTTCTTCAAGCATATTAGAAATGCTTGATAAGATATTTTAATTGAGGAGGTAAGATTAATTATTCTTGGATCTTGTTTGTAGATATATTTGTACGGATAGATAGATTTCCTTTCTTTTCTAATGTTTTATGCGGAAAGAGAGTGATAGATTTTT] [+] EMBL BI506247 [AAGAGGAAGAGATAAAATCGCGGACTGATTAATTACGTGTGCCAAATCGTCGTTACACAGACACATACGTACGTATATACATGCATATATATATACACACACATACACATATATAGATTACACATATACGTATATACAATTGTCATACCGCTGCAGCTGTTCTCGAATAGCGAACTCTTTGCCTGCCGATTTTTCGTGTTCCCTTTTGTTCGCGTATTTGAAAAAAGAACCAGCCAGTGTGTTCTTCGTTCCCTTTAGCTTCTTCGTTCGCGCTTAAAAATAATTCTGCCTTCCTTAATTAAAATTTCTTGTCTTGCATTTTTTTTTGCAAATTTTCCAACATAAGTATTGAAGTATTTTAAATTCTGTTTAATTGTTTTTTCAAATAAAGTTAAAAAGTTTTGATTGCTCTTTAGAGATATGAAATTTATATTATTCTAAGAATATATCTTCTTCAAGCATATTAGAAATGCTTGATA ] [+] EMBL BI505030 [ TACGTGTGCCAAATCGTCGTTACACAGACACATACGTACGTATATACATGCATATATATATACACACACATACACATATATAGATTACACATATACGTATATACAATTGTCATACCGCTGCAGCTGTTCTCGAATAGCGAACTCTTTGCCTGCCGATTTTTCGTGTTCCCTTTTGTTCGCGTATTTGAAAAAAGAACCAGCCAGTGTGTTCTTCGTTCCCTTTAGCTTCTTCGTTCGCGCTTAAAAATAATTCTGCCTTCCTTAATTAAAATTTCTTGTCTTGCATTTTTTTTTGCAAATTTTCCAACATAAGTATTGAAGTATTTTAAATTCTGTTTAATTGTTTTTTCAAATAAAGTTAAAAAGTTTTGATTGCTCTTTAGAGATATGAAATTTATATTATTCTAAGAATATATCTTCTTCAAGCATATTAGAAATGCTTGATA ] [+] EMBL BI504066 [ TGCCAAATCGTCGTTACACAGACACATACGTACGTATATACATGCATATATATATACACACACATACACATATATAGATTACACATATACGTATATACAATTGTCATACCGCTGCAGCTGTTCTCGAATAGCGAACTCTTTGCCTGCCGATTTTTCGTGTTCCCTTTTGTTCGCGTATTTGAAAAAAAAAaa ] [+] EMBL BI511821 [ TACGTACGTATATACATGCATATATATATACACACACATACACATATATAGATTACACATATACGTATATACAATTGTCATACCGCTGCAGCTGTTCTCGAATAGCGAACTCTTTGCCTGCCGATTTTTCGTGTTCCCTTTTGTTCGCGTATTTGAAAAAAGAACCAGCCAGTGTGTTCTTCGTTCCCTTTAGCTTCTTCGTTCGCGCTTAAAAATAATTCTGCCTTCCTTAATTAAAATTTCTTGTCTTGCATTTTTTTTTGCAAATTTTCCAACATAAGTATTGAAGTATTTTAAATTCTGTTTAATTGTTTTTTCAAATAAAGTTAAAAAGTTTTGATTGCTCTTTAGAGATATGAAATTTATATTATTCTAAGAATATATCTTCTTCAAGCATATTAGAAATGCTTGATAAGATATTTTAATTGAGGAGGTAAGATTAATTATTCTTGGATCTTGTTTGTAGATATATTTGTACGGATAGATAGATTTCCTTTCTTTTCTAATGTTTTATGCGGAAAGAGAGTGATAGATTTTT] [+] EMBL BI511283 [ CATACCGCTGCAGCTGTTCTCGAATAGCGAACTCTTTGCCTGCCGATTTTTCGTGTTCCCTTTTGTTCGCGTATTTGAAAAAAGAACCAGCCAGTGTGTTCTTCGTTCCCCTTAGCTTCTCCGTTCGCGCTTAAAAATAATTCTGCCTTCCTTAATTAAAATTTCTTGTCTTGCATTTTTTTTTGCAAATTTTCCAACATAAGTATTGAAGTATTTTAAATTCTGTTTAATTGTTTTTTCAAATAAAGTTAAAAAGTTTTGATTGCTCTTTAGAGATATGAAATTTATATTATTCTAAGAATATATCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_172#0 ------------------------------------------------------------ consensus_172#1 AAGAGGAAGAGATAAAATCGCGGACTGATTAATTACGTGTGCCAAATCGTCGTTACACAG 60 consensus_172#0 ------------------------GCATATATATACACACACATACACATATATAGATTA 36 consensus_172#1 ACACATACGTACGTATATACATGCATATATATATACACACACATACACATATATAGATTA 120 ********************************** consensus_172#0 CACATATACGTATATACAATTGTCATACCGCTGCAGCTGTTCTCGAATAACGAACTCTTT 96 consensus_172#1 CACATATACGTATATACAATTGTCATACCGCTGCAGCTGTTCTCGAATAGCGAACTCTTT 180 ************************************************* ********** consensus_172#0 GCCTGCCGATTTTTCGTGTTCCCTTTTGTTCGCGTATTTGAAAAAAGAACCAGCCAGTGT 156 consensus_172#1 GCCTGCCGATTTTTCGTGTTCCCTTTTGTTCGCGTATTTGAAAAAAGAACCAGCCAGTGT 240 ************************************************************ consensus_172#0 GTTCTTCGTTCCCCTTAGCTTCTTCGTTCGCGCTTAAAAATAATTCTGCCTTCCTTAATT 216 consensus_172#1 GTTCTTCGTTCCCTTTAGCTTCTTCGTTCGCGCTTAAAAATAATTCTGCCTTCCTTAATT 300 ************* ********************************************** consensus_172#0 AAAATTTCTTGTCTTGCATTTTTTTTT--AAATTTTTCAACATAAGTATTGAAAAGTATT 274 consensus_172#1 AAAATTTCTTGTCTTGCATTTTTTTTTGCAAATTTTCCAACATAAGTATTGAA--GTATT 358 *************************** ******* **************** ***** consensus_172#0 TTAAATTCTGTATTTAATTGTTCTTTAATATACTTTCAAATAAAGTTAAAAAGTTCCATT 334 consensus_172#1 TTAAATTCTG--TTTAATTGTTTTTT----------CAAATAAAGTTAAAAAGT----TT 402 ********** ********** *** ****************** ** consensus_172#0 TGATTGCACTTTAGAGATATGAAATTTATATTATTCTAAGAATATATTTTTTTCAAGTAT 394 consensus_172#1 TGATTGCTCTTTAGAGATATGAAATTTATATTATTCTAAGAATATATCTTCTTCAAGCAT 462 ******* *************************************** ** ****** ** consensus_172#0 ATTAGAAAT-------AAGATATTTTAATTGAGGAGGTAAGATTAATTATTCTTGGATCT 447 consensus_172#1 ATTAGAAATGCTTGATAAGATATTTTAATTGAGGAGGTAAGATTAATTATTCTTGGATCT 522 ********* ******************************************** consensus_172#0 TCTTTGTAGATATATTTGTACGGATAGATAGATTTCCTTTCTTTTCTAATGTTTTATGCG 507 consensus_172#1 TGTTTGTAGATATATTTGTACGGATAGATAGATTTCCTTTCTTTTCTAATGTTTTATGCG 582 * ********************************************************** consensus_172#0 GAAAGAGAGTGATAGATTTTTGTGCAAAAGTGGAGTAGGATTTGTACGTAAATAGTGGCN 567 consensus_172#1 GAAAGAGAGTGATAGATTTTT--------------------------------------- 603 ********************* consensus_172#0 TCGACAGGGAAAGACAGGAAAAATCGGCATCGAGCGAGGGA 608 consensus_172#1 ----------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |