These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [CAAATTTATTCGACTATAATTAATAATATGCAATATTTATTTTGAATATATATTTGATACATATTTTTTTATGTATTCAATACGTGTGCAATTTATAACATTGTTACTTGACGTAATATATTTAAATATCCAAAAACAGTTTTTATTATATTACCAAACGTGATCACTGACATATCAATTATCTTTCCGGCAGTCATTTTATATTCCACGCTAGATCGTGTAATAATCATTATCAAATTGAGAATATCTTTCTTAGGTAATCGATACCAATTTGTCATATAAACCATGTTACCAATTTCCTTACACCTTTCAGTTAGTACTTCGCCGATATAACATATTAAAAATGTGTTTAAAGTTATATTTATTACCGCCAAAATATATGTACTGAGAATCCTAATATTATGTTCAGACCATTCCTTAGAATTCTCATATGATGTTCGATGATCACACTTATTTCATCAATGCGATTCTTATTTTCTTTCTGTGACCGGTTTATAAATTCTTCTATCCATATAATCATTATAGTTAACTGACCAGAAGCGTGGCATGCAAATACCGTAGCAAAGCTGAAAGCGCTAATAACGGTAGC] [+] EMBL BI505218 [CAAATTTATTCGACTATAATTAATAATATGCAATATTTATTTTGAATATATATTTGATACATATTTTTTTATGTATTCAATACGTGTGCAATTTATAACATTGTTACTTGACGTAATATATTTAAATATCCAAAAACAGTTTTTATTATATTACCAAACGTGATCACTGACATATCAATTATCTTTCCGGCAGTCATTTTATATTCCACGCTAGATCGTGTAATAATCATTATCAAATTGAGAATATCTTTCTTAGGTAATCGATACCAATTTGTCATATAAACCATGTTACCAATTTCCTTACACCTTTCAGTTAGTACTTCGCCGATATAACATATTAAAAATGTGTTTAAAGTTATATTTATTACCGCCAAAATATATGTACTGAGAATCCTAATATTATGTTCAGACCATTCCTTAGAATTCTCATATGATGTTCGATGATCACACTTATTTCATCAATGCGATTCTTATTTTCTTTCTGTGACCGGTTTATAAATTCTTCTATCCATATAATCATTATAGTTAACTGACCAGAAGCGTGGCATGCAAATACCGTAGCAAAGCTGAAAGCGCTAATAACGGTAGC] consensusID : consensus_1733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [TAACGACAAGGATTCTAATTCTTTTCTGCTGGACTATCGCGGTACTTGACACAACATCGGGCTTATTACATTTCGTCCTCGTGAAAGAAGATATCATCATCAAATTAAAATCTCTGGCTCCTATAAGTTATATTCTTGGCGGAGGGCTCAATTATGCCGTGTTGTTGCTTCGTAAAAATGATATACGCTACTGTATAGACCGCATAGAAGCCGATTGGAAAGTGATCACGAGGATGGCGGATCGGCAAGTGATGCTTAAAAATGCGAAAATTGGTCGCATCATTTCTTGTTGCATCGTAGGCTTCATGCAACTTGGTACTTTTTTTTTTTGCACCATTCTGGGAGTTTTTAAACGAACAATCAAAATCGGCAACGATAGCATGGAAATATACGTTTTACCCTCTCCAACCTATAAAATTCCGGTTGATACCAATCCAGGGCACGATATCGTACTTGGTTTTCAATATGTGGCTGCATACATTACGAGCGCTACCGTTATTAGCGCTTTCAGCTTTGCTACGGTATTTGCATGCCACGCTTCTGGTCAGTTAACTATAATGATTATATGGATAG] [+] EMBL BI507957 [TAACGACAAGGATTCTAATTCTTTTCTGCTGGACTATCGCGGTACTTGACACAACATCGGGCTTATTACATTTCGTCCTCGTGAAAGAAGATATCATCATCAAATTAAAATCTCTGGCTCCTATAAGTTATATTCTTGGCGGAGGGCTCAATTATGCCGTGTTGTTGCTTCGTAAAAATGATATACGCTACTGTATAGACCGCATAGAAGCCGATTGGAAAGTGATCACGAGGATGGCGGATCGGCAAGTGATGCTTAAAAATGCGAAAATTGGTCGCATCATTTCTTGTTGCATCGTAGGCTTCATGCAACTTGGTACTTTTTTTTTTTGCACCATTCTGGGAGTTTTTAAACGAACAATCAAAATCGGCAACGATAGCATGGAAATATACGTTTTACCCTCTCCAACCTATAAAATTCCGGTTGATACCAATCCAGGGCACGATATCGTACTTGGTTTTCAATATGTGGCTGCATACATTACGAGCGCTACCGTTATTAGCGCTTTCAGCTTTGCTACGGTATTTGCATGCCACGCTTCTGGTCAGTTAACTATAATGATTATATGGATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1733#0 CAAATTTATTCGACTATAATTAATAATATGCAATATTTATTTTGAATATATATT-TGATA 59 consensus_1733#1 ----------------TAACGACAAGGATTCTAATTCTTTTCTGCTGGACTATCGCGGTA 44 *** * * ** * * * * ** ** *** * ** consensus_1733#0 CATATTTTTTTAT-GTATTCAATACGTGTGCAATTTATAACATTGTTACTTGACGTAATA 118 consensus_1733#1 CTTGACACAACATCGGGCTTATTACATTTCGTCCTCGTGAAAGA---AGATATCATCATC 101 * * ** * * * *** * * * * * * * * * * ** consensus_1733#0 TATTTAAATATCCAAAAACAGTTTTTATTATATTACCAAACGTGATCACTGACATATCAA 178 consensus_1733#1 AAATTAAA-ATCTCTGGCTCCTATAAGTTATATTCTTGGCGGAGGGCTCAATTATGCCGT 160 * ***** *** * * ******* * * * * ** * consensus_1733#0 TTATCTTTCCGGCAGTCATTTTATATTCCACGCTA--GATCGTGTAATAATCATTATCAA 236 consensus_1733#1 GTTGTTGCTTCGTAAAAATGATATACGCTACTGTATAGACCGCATAGAAGCCGATTGGAA 220 * * * * ** **** * ** ** ** ** ** * * * ** consensus_1733#0 ATTGA----GAATATCTTTCTTAGGTAATCGATACCAATTTGTCATATAAACCATGTTAC 292 consensus_1733#1 AGTGATCACGAGGATGGCGGATCGGCAAGTGATGCTTAAAAATGCGAAAATTGGTCGCAT 280 * *** ** ** * ** ** *** * * * * ** * * consensus_1733#0 CAATTTCC-TTACACC-----TTTCAG-----TTAGTACTTCGCCGATATAACATATTAA 341 consensus_1733#1 CATTTCTTGTTGCATCGTAGGCTTCATGCAACTTGGTACTTTTTTTTTTTGCACCATTCT 340 ** ** ** ** * **** ** ****** * * *** consensus_1733#0 AAATGTGTTTAAAGTTATATTTATTACCGCCAAAATATATGTACTGAGAATCCTAATATT 401 consensus_1733#1 GGGAGTTTTTAAACGAACAATCAAAATCGGCAACG---ATAGCATGGAAATAT--ACGTT 395 ** ****** * * * * * ** *** ** ** *** * ** consensus_1733#0 ATGTTCAGACCATTCCTTAGAATTCTCATATGATGTTCGATGATCACACTTATTTCATCA 461 consensus_1733#1 TTACCCTCTCCAACCTATAAAATTCCGGT-TGATACCAATCCAGGGCACG-ATATCGT-- 451 * * *** * ** ***** * **** * *** ** ** * consensus_1733#0 ATGCGATTCTTATTTTCTTTCTGTGACCGGTTTATAAATTCTTCTATCCATATAATCATT 521 consensus_1733#1 ACTTGGTTTTCAATATGTGGCTGCATACA--TTACGAGCGCTACCGTTATTAGCGCTTTC 509 * * ** * * * * * *** * *** * ** * * ** * consensus_1733#0 ATAGTTAACTGACCAGAAGCGTGGCATGCAAATACCGTAGCAAAGCTGAAAGCGCTAATA 581 consensus_1733#1 AGCTTTGCTACGGTATTTGCATGCCACGC--TTCTGGTCAGTTAACT-ATAATGATTATA 566 * ** * ** ** ** ** * ** * ** * * * * *** consensus_1733#0 ACGGTAGC 589 consensus_1733#1 TGGATAG- 573 * *** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |