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Apis mellifera
cluster # 175 cluster # 175       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_175#0 length = 751 sequences # 5  
consensus_175#1 length = 434 sequences # 1  

consensusID : consensus_175#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 751
fasta sequence
                              [CCAATATCAATTCTCCACCATATTTATCATCAGGATTTCTGTTTAAATAAAAACTAAAAACAGGTTGAGGTACTAATCCTTGTTTAACCATATTGTAAAATACAGGTGTTACACCATCAACAGAAATTTTAGAATAAGCCATTCCTAAGATACCATCAAATTTAGCAGCAACAAAAGCTAATCCAGGTTCACTCAAAGCTTCAGCAAAAGTCTGATCAGAAATTTTCATTCCTGCAATATCTACAGTATCAGTGGAAAGATAGCCAGAGAGACTTCCAGAGCCATAACGGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGC-AATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACACCATAATATTGAGCATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCATGAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAATTAAAAGATTAAGTTATGTATTAAAAAAAAAAAAAAATAGCACTATAGAAAAAAA]

[+] EMBL BI510332             [CCAATATCAATTCTCCACCATATTTATCATCAGGATTTCTGTTTAAATAAAAACTAAAAACAGGTTGAGGTACTAATCCTTGTTTAACCATATTGTAAAATACAGGTGTTACACCATCAACAGAAATTTTAGAATAAGCCATTCCTAAGATACCATCAAATTTAGCAGCAACAAAAGCTAATCCAGGTTCACTCAAAGCTTCAGCAAAAGTCTGATCAGAAATTTTCATTCCTGCAATATCTACAGTATCAGTGGAAAGATAGCCAGAGAGACTTCCAGAGCCATAACGGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGC AATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACACCATAATATTGAGCATCTAAGTAGTTAGNAAGAGGTTCTGGCTGNNNCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTAT                                                                                                                                                                      ]
[-] EMBL BI507683             [                             TCAGGATTTCTGTTTAAATAAAAACTAAAAACAGGTTGAGGTACTAATCCTTGTTTAACCATATTGTAAAATACAGGTGTTACACCATCAACAGAAATTTTAGAATAAGCCATTNNNAAGATACCATCAAATTTAGCAGCAACAAAAGCTAATCCAGGTTCACTCAAAGCTTCAGCAAAAGTCTGATCAGAAATTTTCATTCCTGCAATATCTACAGTATCAGTGGAAAGATAGCCAGAGAGACTTCCAGAGCCATAACGGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGCNNNTATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCT                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BI506155             [                                                       AAAAACAGGTTGAGGTACTAATCCTTGTTTAACCATATTGTAAAATACAGGTGTTACACCATCAACAGAAATTTTAGAATAAGCCATTCCTAAGATACCATCAAATTTAGCAGCAACAAAAGCTAATCCAGGTTCACTCAAAGCTTCAGCAAAAGTCTGATCAGAAATTTTCATTCCTGCAATATCTACAGTATCAGTGGAAAGATAGCCAGAGAGACTTCCAGAGCCATAACGGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGC AATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACACCATAATATTGAGCATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTAT                                                                                                                     ]
[-] EMBL BI514733             [                                                                                                                                                                                                                                                                                                    TGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGC AATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACACCATAATATTGAGCATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCATGAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAATTAAAAGATTAAGTTATGTATTAAATAATATTAAATATAGCACTATAGAAAAAAA]
[-] EMBL BI512932             [                                                                                                                                                                                                                                                                                                                                            GTGTTATCATATTTACGATGTAATTTGCAAGC AATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACCCCATAATATTGAGCATTTAAGTAGTTAGAAAGAGGTNNNGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCATGAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAATTAAAAGATTAAGTTATGTATTAAAAAAAAAAAAAA                   ]


>consensus_175#0 CCAATATCAATTCTCCACCATATTTATCATCAGGATTTCTGTTTAAATAAAAACTAAAAA CAGGTTGAGGTACTAATCCTTGTTTAACCATATTGTAAAATACAGGTGTTACACCATCAA CAGAAATTTTAGAATAAGCCATTCCTAAGATACCATCAAATTTAGCAGCAACAAAAGCTA ATCCAGGTTCACTCAAAGCTTCAGCAAAAGTCTGATCAGAAATTTTCATTCCTGCAATAT CTACAGTATCAGTGGAAAGATAGCCAGAGAGACTTCCAGAGCCATAACGGATTGCAAAGT CAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGC AAGCAATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTAT CAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACACCATAATATTGAG CATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTT GATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATG GAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCAT GAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAATTAAAAGATTAAGTTATGTATTAA AAAAAAAAAAAAATAGCACTATAGAAAAAAA



consensusID : consensus_175#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence
                              [GGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGCAATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACCCCATAATATTGAGCATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCATGAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAAAAAAAAAAAAAAAGCAACGCGGCCGC]

[-] EMBL BI513499             [GGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGCAAGCAATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACCCCATAATATTGAGCATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCATGAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAAAAAAAAAAAAAAAGCAACGCGGCCGC]


>consensus_175#1 GGATTGCAAAGTCAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTAC GATGTAATTTGCAAGCAATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTG AGGAACCAGTATCAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACCC CATAATATTGAGCATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAA ATATATGTGTTTGATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGA TTTTGTGCAATGGAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGC ACAGAATGGCATGAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAAAAAAAAAAAAAA AGCAACGCGGCCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_175#0      CCAATATCAATTCTCCACCATATTTATCATCAGGATTTCTGTTTAAATAAAAACTAAAAA 60
consensus_175#1      ------------------------------------------------------------
                                                                                 

consensus_175#0      CAGGTTGAGGTACTAATCCTTGTTTAACCATATTGTAAAATACAGGTGTTACACCATCAA 120
consensus_175#1      ------------------------------------------------------------
                                                                                 

consensus_175#0      CAGAAATTTTAGAATAAGCCATTCCTAAGATACCATCAAATTTAGCAGCAACAAAAGCTA 180
consensus_175#1      ------------------------------------------------------------
                                                                                 

consensus_175#0      ATCCAGGTTCACTCAAAGCTTCAGCAAAAGTCTGATCAGAAATTTTCATTCCTGCAATAT 240
consensus_175#1      ------------------------------------------------------------
                                                                                 

consensus_175#0      CTACAGTATCAGTGGAAAGATAGCCAGAGAGACTTCCAGAGCCATAACGGATTGCAAAGT 300
consensus_175#1      ------------------------------------------------GGATTGCAAAGT 12
                                                                     ************

consensus_175#0      CAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGC 360
consensus_175#1      CAGTACCATTCTTCTTGTATGTAGATGATTTGGTGTTATCATATTTACGATGTAATTTGC 72
                     ************************************************************

consensus_175#0      AAGCAATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTAT 420
consensus_175#1      AAGCAATATTGGTAAGATGACATTTTTTAGAGGGAACCCAGAGATTTGAGGAACCAGTAT 132
                     ************************************************************

consensus_175#0      CAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACACCATAATATTGAG 480
consensus_175#1      CAAAGATTACTCTGAAATCTTGTGGAGGAGTTCCAATGCTAATAACCCCATAATATTGAG 192
                     ********************************************** *************

consensus_175#0      CATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTT 540
consensus_175#1      CATCTAAGTAGTTAGAAAGAGGTTCTGGCTGAGGCAAATCTCCTTGAAATATATGTGTTT 252
                     ************************************************************

consensus_175#0      GATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATG 600
consensus_175#1      GATATATTTCTGTGTTATATTCTTTGAATTGTTTCCTAATGCTATCGATTTTGTGCAATG 312
                     ************************************************************

consensus_175#0      GAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCAT 660
consensus_175#1      GAATCCTCGTAACATCAGCATTGGCTATCGCTATAAAAGCGCAAAAGCACAGAATGGCAT 372
                     ************************************************************

consensus_175#0      GAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAATTAAAAGATTAA-GTTATGTATTA 719
consensus_175#1      GAAACATTTTTAAATAAGTTTCCAGTGCCTTTAAAAAAAAAAAAAAAAAGCAACGCGGCC 432
                     ************************************  **** *  ** *  * *     

consensus_175#0      AAAAAAAAAAAAAATAGCACTATAGAAAAAAA 751
consensus_175#1      GC------------------------------ 434
                                                     




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)