These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [GAGATATTATCTTGGGTATGGAAATTAGTGCACCCTCTGCACAACGTCAACAAATTGCTGAAATAGAAAAGCAAACAAAAGAACAATCGCAGCTTACAGCAACGACTACAAGGACAGTAAACAAACATGGAGACGAAATTATCACGGCGACAACTTCCAATTATGAAACACAAACATTTAGTTCGAAAACTGAATGGCGAGTAAGAGCAATTTCTGCTACCAATTTGCATCTTCGAACTAATCATATATATGTATCATCCGATGATATTAAGGAAACTGGTTACACATATATTTTGCCAAAGAATGTTCTCAAAAAATTCGTCACTATTTCAGATTTACGAGCGCAGATAGCGGGATATTTATATGGAATTAGCCCACCAGATAATCCACAAGTTAAAGAAATACGATGTATAGTTATGGCACCACAATGGGGTACTCATCAAACAGTTCATTTACCTAATACACTTCCAAATCATCAATATCTTAAGGAAATGGAGCCTCTCGGTTGGATTCAT] [+] EMBL BI510572 [GAGATATTATCTTGGGTATGGAAATTAGTGCACCCTCTGCACAACGTCAACAAATTGCTGAAATAGAAAAGCAAACAAAAGAACAATCGCAGCTTACAGCAACGACTACAAGGACAGTAAACAAACATGGAGACGAAATTATCACGGCGACAACTTCCAATTATGAAACACAAACATTTAGTTCGAAAACTGAATGGCGAGTAAGAGCAATTTCTGCTACCAATTTGCATCTTCGAACTAATCATATATATGTATCATCCGATGATATTAAGGAAACTGGTTACACATATATTTTGCCAAAGAATGTTCTCAAAAAATTCGTCACTATTTCAGATTTACGAGCGCAGATAGCGGGATATTTATATGGAATTAGCCCACCAGATAATCCACAAGTTAAAGAAATACGATGTATAGTTATGGCACCACAATGGGGTACTCATCAAACAGTTCATTTACCTAATACACTTCCAAATCATCAATATCTTAAGGAAATGGAGCCTCTCGGTTGGATTCAT] consensusID : consensus_1769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [AGTTCATTTACCTAATACACTTCCAAATCATCAATATCTTAAGGAAATGGAGCCTCTCGGTTGGATTCATACTCAACCTAATGAATTGCCACAATTATCGCCACAGGATATATCTACTCACGCTCGAATAATGGCAGAAAATCCAATTTGGGATGGAGAAAAGACTATTGTTATTACTTGCAGTTTTACGCCAGGATCTTGTTCTCTTACGGCATATAAATTAACACCTAGTGGTTTTGAATGGGGAAAGCAAAATACCGATAAGGGAAATAATCCTAAAGGTTATTTACCAAGTCATTATGAAAAAGTACAAATGTTATTATCTGATCGTTTTCTTGGTTTCTTTATGGTCCCAAGTCAAGGATCTTGGAATTATAACTTTATGGGTGTGAGACATGATCCAAATATGAAATATGAATTGCAATTGGCAAATCCGAAAGAATTTTATCATGAAATTCATAGACCTGCCCAT] [+] EMBL BI512028 [AGTTCATTTACCTAATACACTTCCAAATCATCAATATCTTAAGGAAATGGAGCCTCTCGGTTGGATTCATACTCAACCTAATGAATTGCCACAATTATCGCCACAGGATATATCTACTCACGCTCGAATAATGGCAGAAAATCCAATTTGGGATGGAGAAAAGACTATTGTTATTACTTGCAGTTTTACGCCAGGATCTTGTTCTCTTACGGCATATAAATTAACACCTAGTGGTTTTGAATGGGGAAAGCAAAATACCGATAAGGGAAATAATCCTAAAGGTTATTTACCAAGTCATTATGAAAAAGTACAAATGTTATTATCTGATCGTTTTCTTGGTTTCTTTATGGTCCCAAGTCAAGGATCTTGGAATTATAACTTTATGGGTGTGAGACATGATCCAAATATGAAATATGAATTGCAATTGGCAAATCCGAAAGAATTTTATCATGAAATTCATAGACCTGCCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1769#0 GAGATATTATCTTGGGTATGGAAATTAGTGCACCCTCTGCACAACGTCAACAAATTGCTG 60 consensus_1769#1 -------------AGTTCATTTACCTAATACACTTCC---AAATCATCAATATCTTAAGG 44 * * * ** * *** * * * * **** * ** * consensus_1769#0 AAATAGAAAAGCAAACAAAAGAACAATCGCAGCTTA-----CAGCAACGACTACAAGGAC 115 consensus_1769#1 AAATGGAGCCTCTCGGTTGGATTCATACTCAACCTAATGAATTGCCACAATTATCGCCAC 104 **** ** * ** * ** * ** ** ** * ** ** consensus_1769#0 AGTAAACAAACATGGAGACGAAATTATCACGGCGACAACTTCCAATTATGAAACACAAAC 175 consensus_1769#1 AGGATATATCTACTCACGCTCGA--ATAATGGCAGAAAATCCAATTTGGGATGGAGAAAA 162 ** * * * * * * * ** * *** ** * * * ** ** * *** consensus_1769#0 ATTTAGTTCGAAAACTGAATGGCGAGTAAGAGCAATTTCTGCTACCAATTTGCATCTTCG 235 consensus_1769#1 GACTATTGTTATTACTTGCAGTTTTACGCCAGGATCTTGTTCT-----CTTACGGCATAT 217 ** * * *** * ** * ** * ** ** * * * consensus_1769#0 AACTAATCATATATATGTATCATCCGATGATATTAAGGAAACTGGTTACACATATATTTT 295 consensus_1769#1 AAATTAACACCTAGTGGTTTTGAATGGGGAAAGCAAA-ATACCGATAAGGGAAATAATC- 275 ** * * ** ** ** * * ** * ** * ** * * * * *** * consensus_1769#0 GCCAAAGAATGTTCTCAAAAAATTCGTCACTATTTCAGATTTACGAGCGCAGATAGCGGG 355 consensus_1769#1 -CTAAAGGTTATTTACCAA------GTCATTATGA-AAAAGTACAAATGTTATTATCTGA 327 * **** * ** * ** **** *** * * *** * * ** * * consensus_1769#0 ATATTTATATGGAATTAGCCCACCAGATAATCCACAAGTTAAAGAAATACGATGTATAG- 414 consensus_1769#1 TCGTTTTCTTGGTTT-------CTTTATGGTCC-CAAGTCAAGGATCTTGGAATTATAAC 379 *** *** * * ** *** ***** ** ** * ** **** consensus_1769#0 -TTATGGCACCACAATGGGGTACTCATCAAACAGTTCATTTACCTAATACACTTCCAAAT 473 consensus_1769#1 TTTATGGGTGTGAGACATGATCCAAATATGAAATATGAATTGCAATTGGCAAATCCGAAA 439 ****** * * * * ** * * * * ** * ** *** ** consensus_1769#0 CATCAATATCTTAAGGAAATGGAGCCTCTCGGTTGGATTCAT 515 consensus_1769#1 GAATTTTATCATGAAATTCATAGACCTGCCCAT--------- 472 * **** * * *** * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |