These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 788 fasta sequence [AAAAGAGCGTCGAGACGACCGACAGATAAGACATCCAGTCAATCATTTCCTGCACATAACCGAAAAACTCCTTTATGAGAAAAGAAATTGTGATGAATATTGAAAAGATAAACATGCCACCAAGACCGTATAAGTGCAATGTACGTCTTCCTGTCCTATCCATAAGAGGGATGGATACTAACGTCATAACAACCATAATGGAACCTATGCCAATGGTTGCAAACTTGGCACTCTCCTCTGTCAAACCAGAACTAGTATACAAATTTGTCGAATAGTAAAATACAGCGTTAATGCCTGAAAGCTGTTGGGAAAGTTGCATAACCACACCGATGATAAGAGGTGCTCTCAAAGTTGGGCTACATATGAGCTCTGTCATCGATATTCTAGACTCGGCTTGTTGAGCTCGTTCTTCGGCTCTCATTTCTTCGATGTCTTCTTCCACTTGGTTACTGGCTCTCAACCTCCTCAAAGCTTTACGGGCTTCCTCCTCCCACTGTTTAGTAATGAGCAAATATCTTGGAGATTCGGGGCAAACTGGAAGCAGCAATAACTGTAGAAATGGCAGGGCAGATAGCTAGTAATAAGAGAACTGGCCAACCCTCGTCTGTTCCAAGGATTTGCTCGATGCCCAGCACCTGGGAGACCAGGAAGCCCACCGTAAACAGCGAGCTGGTTCACCGTGCCTAGGCCGCCTCTCAAGGTTCAGTGGTGCTATCTCCGATATGTACATGGGGAACCAACGAAGTGTTTAACCCACAATTGACACCGATGATGAACCCTCCAAAGAA] [-] EMBL BI510280 [AAAAGAGCGTCGAGACGACCGACAGATAAGACATCCAGTCAATCATTTCCTGCACATAACCGAAAAACTCCTTTATGAGAAAAGAAATTGTGATGAATATTGAAAAGATAAACATGCCACCAAGACCGTATAAGTGCAATGTACGTCTTCCTGTCCTATCCATAAGAGGGATGGATACTAACGTCATAACAACCATAATGGAACCTATGCCAATGGTTGCAAACTTGGCACTCTCCTCTGTCAAACCAGAACTAGTATACAAATTTGTCGAATAGTAAAATACAGCGTTAATGCCTGAAAGCTGTTGGGAAAGTTGCATAACCACACCGATGATAAGAGGTGCTCTCAAAGTTGGGCTACATATGAGCTCTGTCATCGATATTCTAGACTCGGCTTGTTGAGCTCGTTCTTCGGCTCTCATTTCTTCGATGTCTTCTTCCACTTGGTTACTGGCTCTCAACCTCCTCAAAGCTTTACGGGCTTCCTCCTCCCACTGTTTAGTAATGAGCAAATATCTTGGAGATTCGGGGCAAACTGGAAGCAGCAATAACTGTAG AATGGCAGGGCAGATAGCTAGTA ] [+] EMBL BE844475 [ CCTGTCCTATCCATAAGAGGGATGGATACTAACGTCATAACAACCATAATGGAACCTATGCCAATGGTTGCAAACTTGGCACTCTCCTCTGTCAAACCAGAACTAGTATACAAATTTGTCGAATAGTAAAATACAGCGTTAATGCCTGAAAGCTGTTGGGAAAGTTGCATAACCACACCGATGATAAGAGGTGCTCTCAAAGTTGGGCTACATATGAGCTCTGTCATCGATATTCTAGACTCGGCTTGTTGAGCTCGTTCTTCGGCTCTCATTTCTTCGATGTCTTCTTCCACTTGGTTACTGGCTCTCAACCTCCTCAAAGCTTTACGGGCTTCCTCCTCCCACTGTTTAGTAATGAGCAAATATCTTGGAGATTCGGGGCAAACTGGAAGCAGCAATAACTGTAGAAATGGCAGGGCAGATAGCTAGTAATAAGAGAACTGGCCAACCCTCGTCTGTTCCAAGGATTTGCTCGATGCCCAGCACCTGGGAGACCAGGAAGCCCACCGTAAACAGCGAGCTGGTTCACCGTGCCTAGGCCGCCTCTCAAGGTTCAGTGGTGCTATCTCCGATATGTACATGGGGAACCAACGAAGTGTTTAACCCACAATTGACACCGATGATGAACCCTCCAAAGAA] consensusID : consensus_191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 654 fasta sequence [CAAGCTGCTCCTGTCGTTACCATGCCTGAATAAAGCTAGAATTTCTTCGAATGTTTTATTCTTGGTCTCAGGAACCTGCTTGTACGTGAAGATCCAGAAGATGGCTAGGAATGCACTGAATGGTAGGAACGTGTAGTTTTCAAGGCTAGTCTTCATACTTGGAAAACCGATGCCAACCACAAAATTAGCTATCCAATTGACGAGGACCGCGATGACATGGCCGCAGGTCTGGGGCCTTGCGAGAACAGTTCGGCCGTGATCATCCACGGGATGGAGCCGGGGCCCACGGCAAAAAATACGACGAAAAAGAGCGTCGAGACGACCGACAGATAAGACATCCAGTCAATCATTTCCTTTATGAGAAAAGAAATTGTGATGAATATTGAAAAGATAAACATGCCACCAAGACCGTATAAGTGCAATGTACGTCTTCCTGTCCTATCCATAAGAGGGATGGATACTAACGTCATAACANNCATAATGGAACCTATGCCAATGGTTGCAAACTTGGCACTCTCCTCTGTCAAACCAGAACTAGTATACAAATTTGTCGAATAGTAAAATACAGCGTTAATGCCTGAAAGCTGTTGGGAAAGTTGCATAACCACACCGATGATAAGAGGTGCTCTCAAAGTTGGGCTACATATGAGCTCT] [-] EMBL BI505692 [CAAGCTGCTCCTGTCGTTACCATGCCTGAATAAAGCTAGAATTTCTTCGAATGTTTTATTCTTGGTCTCAGGAACCTGCTTGTACGTGAAGATCCAGAAGATGGCTAGGAATGCACTGAATGGTAGGAACGTGTAGTTTTCAAGGCTAGTCTTCATACTTGGAAAACCGATGCCAACCACAAAATTAGCTATCCAATTGACGAGGACCGCGATGACATGGCCGCAGGTCTGGGGCCTTGCGAGAACAGTTCGGCCGTGATCATCCACGGGATGGAGCCGGGGCCCACGGCAAAAAATACGACGAAAAAGAGCGTCGAGACGACCGACAGATAAGACATCCAGTCAATCATTTCCTTTATGAGAAAAGAAATTGTGATGAATATTGAAAAGATAAACATGCCACCAAGACCGTATAAGTGCAATGTACGTCTTCCTGTCCTATCCATAAGAGGGATGGATACTAAC ] [-] EMBL BI516958 [ AAAATACGACGAAAAAGAGCGTCGAGACGACCGACAGATAAGACATCCAGTCAATCATTTCCTTTATGAGAAAAGAAATTGTGATGAATATTGAAAAGATAAACATGCCACCAAGACCGTATAAGTGCAATGTACGTCTTCCTGTCCTATCCATAAGAGGGATGGATACTAACGTCATAACANNCATAATGGAACCTATGCCAATGGTTGCAAACTTGGCACTCTCCTCTGTCAAACCAGAACTAGTATACAAATTTGTCGAATAGTAAAATACAGCGTTAATGCCTGAAAGCTGTTGGGAAAGTTGCATAACCACACCGATGATAAGAGGTGCTCTCAAAGTTGGGCTACATATGAGCTCT] consensusID : consensus_191#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 561 fasta sequence [ATTATTTGTTTGAGTTCCATAGGTGTTTACGATTAATTTCCTCCTGAGAGAGAACTCCTCCGGCTGCTCAGGAAAGAAGAACACGATTCTACTGCCTGATAGGAGTTTTTCGGTTATGTGCAGGAAATGATTGACTGGATGTCTTATCTGTCGGTCGTCTCGACGCTCTTTTTCGTCGTATTTTTCGCCGTGGGCCCCGGCTCCATCCCGTGGATGATCACGGCCGAACTGTTCTCGCAAGGCCCCAGACCTGCGGCCATGTCCATCGCGGTCCTCGTCAATTGGATAGCTAATTTTGTGGTTGGCATCGGTTTTCCAAGTATGAAGACTAGCCTTGAAAACTACACGTTCCTACCATTCAGTGCATTCCTAGCCATCTTCTGGATCTTCACGTACAAGCAGGTTCCTGAGACCAAGAATAAAACATTCGAAGAAATTCTAGCTTTATTCAGGCATGGTAACGACAGGAGCAGCTTGCGGGACAGCAGACTTTATGGGGAAGAGGAGCTCGCCACTAACTCTAGCAAGGAGACCGTCCTATCTGACGCCACCACTGCCAAC] [+] EMBL BI510256 [ATTATTTGTTTGAGTTCCATAGGTGTTTACGATTAATTTCCTCCTGAGAGAGAACTCCTCCGGCTGCTCAGGAAAGAAGAACACGATTCTACTGCCTGATAGGAGTTTTTCGGTTATGTGCAGGAAATGATTGACTGGATGTCTTATCTGTCGGTCGTCTCGACGCTCTTTTTCGTCGTATTTTTCGCCGTGGGCCCCGGCTCCATCCCGTGGATGATCACGGCCGAACTGTTCTCGCAAGGCCCCAGACCTGCGGCCATGTCCATCGCGGTCCTCGTCAATTGGATAGCTAATTTTGTGGTTGGCATCGGTTTTCCAAGTATGAAGACTAGCCTTGAAAACTACACGTTCCTACCATTCAGTGCATTCCTAGCCATCTTCTGGATCTTCACGTACAAGCAGGTTCCTGAGACCAAGAATAAAACATTCGAAGAAATTCTAGCTTTATTCAGGCATGGTAACGACAGGAGCAGCTTGCGGGACAGCAGACTTTATGGGGAAGAGGAGCTCGCCACTAACTCTAGCAAGGAGACCGTCCTATCTGACGCCACCACTGCCAAC] [-] EMBL BI509566 [ tTTTTTTTGAGTTCCATAGGTGTTTACGATTAATTTCCTCCTGAGAGAGAACTCCTCCGGCTGCTCAGGAAAGAAGAACACGATTCTACTGCCTGATAGGAGTTTTTCGGTTATGTGCAGGAAATGATTGACTGGATGTCTTATCTGTCGGTCGTCTCGACGCTCTTTTTCGTCGTATTTTTCGCCGTGGGCCCCGGCTCCATCCCGTGGATGATCACGGCCGAACTGTTCTCGCAAGGCCCCAGACCTGCGGCCATGTCCATCGCGGTCCTCGTCAATTGGATAGCTAATTTTGTGGTTGGCATCGGTTTTCCAAGTATGAAGACTAGCCTTGAAAACTACACGTTCCTACCATTCAGTGCATTCCTAGCCATCTTCTGGATCTTCACGTACAAGCAGGTTCCTGAGACCAAGAATAAAACATTCGAAGAAATTCTAGCTTTATTCAGGCATGGTAACGACAGGAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_191#0 ------------------------------------------------------------ consensus_191#1 CAAGCTGCTCCTGTCGTTACCATGCCTGAATAAAGCTAGAATTTCTTCGAATGTTTTATT 60 consensus_191#2 ------------------------------------------------------------ consensus_191#0 ------------------------------------------------------------ consensus_191#1 CTTGGTCTCAGGAACCTGCTTGTACGTGAAGATCCAGAAGATGGCTAGGAATGCACTGAA 120 consensus_191#2 ------------------------------------------------------------ consensus_191#0 ------------------------------------------------------------ consensus_191#1 TGGTAGGAACGTGTAGTTTTCAAGGCTAGTCTTCATACTTGGAAAACCGATGCCAACCAC 180 consensus_191#2 ------------------------------------------------------------ consensus_191#0 ------------------------------------------------------------ consensus_191#1 AAAATTAGCTATCCAATTGACGAGGACCGCGATGACATGGCCGCAGGTCTGGGGCCTTGC 240 consensus_191#2 ------------------------------------------------------------ consensus_191#0 ------------------------------------------------------------ consensus_191#1 GAGAACAGTTCGGCCGTGATCATCCACGGGATGGAGCCGGGGCCCACGGCAAAAAATACG 300 consensus_191#2 ------------------------------------------------------------ consensus_191#0 ----AAAAGAGCGTCGAGACGACCGACAGATAAGACATCCAGTCAATCATTTCCTGCACA 56 consensus_191#1 ACGAAAAAGAGCGTCGAGACGACCGACAGATAAGACATCCAGTCAATCATTTCCT----- 355 consensus_191#2 ---------ATTATTTGTTTGAGTTCCAT---AGGTGTTTA--CGATTAATTTCC----- 41 * * ** ** ** * * * ** * ** * consensus_191#0 TAACCGAAAAACTCCTTTATGAGAAAAGAAATTGTGATGAATATTGAAAAGATAAACATG 116 consensus_191#1 ----------------TTATGAGAAAAGAAATTGTGATGAATATTGAAAAGATAAACATG 399 consensus_191#2 ----------------TCCTGAGAGAGAACTCCTCCGGCTGCTCAGGAAAGAAGAACACG 85 * ***** * * * ***** **** * consensus_191#0 CCACCAAGACCGTATAAGTGCAATGTACGTCTTCCTGTCCTATCCATAAGAGGGATGGAT 176 consensus_191#1 CCACCAAGACCGTATAAGTGCAATGTACGTCTTCCTGTCCTATCCATAAGAGGGATGGAT 459 consensus_191#2 ATTCTACTGCCTGATAGGAG---------TTTTTCGGTTATGTGCAGGAAATGATTGACT 136 * * ** *** * * * ** * ** * * ** * * * ** * consensus_191#0 ACTAACGTCATAACAACCATAATGGAACCTATGCCAATGGTTGCAAACTTGGCACTCTCC 236 consensus_191#1 ACTAACGTCATAACANNCATAATGGAACCTATGCCAATGGTTGCAAACTTGGCACTCTCC 519 consensus_191#2 G--GATGTCTTATCTGTCGG--------TCGTCTCGACGCTCTTTTTCGTCGTATTTTTC 186 * *** ** * * * * * * * * * * * * * * consensus_191#0 TCTGTCAAACCAGAACTAGTATACAAATTTGTCGAATAGTAAAATACAGCGTTAATGCCT 296 consensus_191#1 TCTGTCAAACCAGAACTAGTATACAAATTTGTCGAATAGTAAAATACAGCGTTAATGCCT 579 consensus_191#2 GCCGTGGGCCCCGGCTCCAT-CCCGTGGATGATCACGGCCGAACTGTTCTCGCAAGGCCC 245 * ** ** * * * ** * ** * ** *** consensus_191#0 GAAAGCTGTTGGGAAAGTTGCATAACCACACCGATGATAAGAGGTGCTCTCAAAGTTGGG 356 consensus_191#1 GAAAGCTGTTGGGAAAGTTGCATAACCACACCGATGATAAGAGGTGCTCTCAAAGTTGGG 639 consensus_191#2 CAGACCTGC--GGCCATGTCCATCGCGGTCCTCGTCAATTGGATAGCT---AATTTTGTG 300 * * *** ** * * *** * * * * * *** ** *** * consensus_191#0 CTACATATGAGCTCTGTCATCGATATTCTAGACTCGGCTTGTTGA--GCTCGTTCTTCGG 414 consensus_191#1 CTACATATGAGCTCT--------------------------------------------- 654 consensus_191#2 GTTGGCATCGGTTTT----CCAAGTATGAAGACTAGCCTTGAAAACTACACGTTCCTACC 356 * ** * * * consensus_191#0 CTCTCATTTCTTCGATGTCTTCTTCCACTTGGTTACTGGCTCTCAACCTCCTCAAAGCTT 474 consensus_191#1 ------------------------------------------------------------ consensus_191#2 ATTCAGTGCATTCCTAGCCATCTTCTGGATCTTCACGTACAAGCAGGTTCCTGAGACCAA 416 consensus_191#0 TACGGGCTTCCTCCTCCCACTGTTTAGTAATGAGCAAATATCTTGGAGATTCGGGGCAAA 534 consensus_191#1 ------------------------------------------------------------ consensus_191#2 GAATAAAACATTCGAAGAAAT-TCTAGCTTTATTCAGGCATGGTAACGACAGGAGCAGCT 475 consensus_191#0 CTGGAAGCAGCAATAACTGTAGAAATGGCAGGGCAGATAGCTAGT--AATAAGAGAACTG 592 consensus_191#1 ------------------------------------------------------------ consensus_191#2 TGCGGGACAGCAGACTTTATGGGGAAGAGGAGCTCGCCACTAACTCTAGCAAGGAGACCG 535 consensus_191#0 GCCAACCCTCGTCTGTTCCAAGGATTTGCTCGATGCCCAGCACCTGGGAGACCAGGAAGC 652 consensus_191#1 ------------------------------------------------------------ consensus_191#2 TCCTATCTGACGCCACCACTGCCAAC---------------------------------- 561 consensus_191#0 CCACCGTAAACAGCGAGCTGGTTCACCGTGCCTAGGCCGCCTCTCAAGGTTCAGTGGTGC 712 consensus_191#1 ------------------------------------------------------------ consensus_191#2 ------------------------------------------------------------ consensus_191#0 TATCTCCGATATGTACATGGGGAACCAACGAAGTGTTTAACCCACAATTGACACCGATGA 772 consensus_191#1 ------------------------------------------------------------ consensus_191#2 ------------------------------------------------------------ consensus_191#0 TGAACCCTCCAAAGAA 788 consensus_191#1 ---------------- consensus_191#2 ---------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |