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Apis mellifera
cluster # 1955 cluster # 1955       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1955#0 length = 621 sequences # 1  
consensus_1955#1 length = 465 sequences # 1  

consensusID : consensus_1955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence
                              [ATCGCGTGACTCCTACTGCTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTATTACCTCTCACCATGCATTCCTACGTACAGAGAGCAACTTTTTATTTAAAAACTATCTCTCTCAGGAGTATCGTAGTGGAACGAATAGGAAGTGGAGGACGGGTTCATTTACCTGAATGTCTGAATAATCATATACGAGGTGGCTTGACAGGTCTTGGACATAAGGTCCTCTTTTAGGATGTTCCCGCACTCTGAGAGAATGAGACTGTGACTGATCCAGTCTTAGCAAATCCCTTACTCTTTCATTGTGTATTTCCAGGAAAGATACCTCGGTTCTATACGATGCTCCGCTCTCTTTACCAGCAGCCATTCTAGCAAATAATGTCTTACAAATCCGCGGTATCAATCCTTGAGCTTCCTAAGGTTTAAACATAATAAAAAATTATTAGAAGTAAAAAATAGAATTATTTGTGTTATAACAAATTATTGTTATATAATGAGATTATATTTTGAATCAAAGAAAAATTATAGAAATCAGGTGAAAGTTTTAGGCAAACGTTTTGCAATAATTTCTGTACTGATGAAAAGTGAATTGCGATTTAAAGGCATTAGAGCGTATTA]

[+] EMBL BI504523             [ATCGCGTGACTCCTACTGCTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTATTACCTCTCACCATGCATTCCTACGTACAGAGAGCAACTTTTTATTTAAAAACTATCTCTCTCAGGAGTATCGTAGTGGAACGAATAGGAAGTGGAGGACGGGTTCATTTACCTGAATGTCTGAATAATCATATACGAGGTGGCTTGACAGGTCTTGGACATAAGGTCCTCTTTTAGGATGTTCCCGCACTCTGAGAGAATGAGACTGTGACTGATCCAGTCTTAGCAAATCCCTTACTCTTTCATTGTGTATTTCCAGGAAAGATACCTCGGTTCTATACGATGCTCCGCTCTCTTTACCAGCAGCCATTCTAGCAAATAATGTCTTACAAATCCGCGGTATCAATCCTTGAGCTTCCTAAGGTTTAAACATAATAAAAAATTATTAGAAGTAAAAAATAGAATTATTTGTGTTATAACAAATTATTGTTATATAATGAGATTATATTTTGAATCAAAGAAAAATTATAGAAATCAGGTGAAAGTTTTAGGCAAACGTTTTGCAATAATTTCTGTACTGATGAAAAGTGAATTGCGATTTAAAGGCATTAGAGCGTATTA]


>consensus_1955#0 ATCGCGTGACTCCTACTGCTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTA TTACCTCTCACCATGCATTCCTACGTACAGAGAGCAACTTTTTATTTAAAAACTATCTCT CTCAGGAGTATCGTAGTGGAACGAATAGGAAGTGGAGGACGGGTTCATTTACCTGAATGT CTGAATAATCATATACGAGGTGGCTTGACAGGTCTTGGACATAAGGTCCTCTTTTAGGAT GTTCCCGCACTCTGAGAGAATGAGACTGTGACTGATCCAGTCTTAGCAAATCCCTTACTC TTTCATTGTGTATTTCCAGGAAAGATACCTCGGTTCTATACGATGCTCCGCTCTCTTTAC CAGCAGCCATTCTAGCAAATAATGTCTTACAAATCCGCGGTATCAATCCTTGAGCTTCCT AAGGTTTAAACATAATAAAAAATTATTAGAAGTAAAAAATAGAATTATTTGTGTTATAAC AAATTATTGTTATATAATGAGATTATATTTTGAATCAAAGAAAAATTATAGAAATCAGGT GAAAGTTTTAGGCAAACGTTTTGCAATAATTTCTGTACTGATGAAAAGTGAATTGCGATT TAAAGGCATTAGAGCGTATTA



consensusID : consensus_1955#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence
                              [AATATTTTCTTGGATGGTCATATAATAATACATTCAAAAAAGGCCATTTTAATCTATCCATTTAACTATTCATCTAATTCATCTACTTTCATCTTAATATTTTTGATATGTTACTTTTTTAATCTTTATTTATTTATTAGATTTTAATAATAAAAATGAAAGAGAAAGAAAGAGAGAAAGAGAGAAATAGACAGACAGACAGAGAGATAGAGAGAGAAAAAGACAGAGATTAAATAATGCAATAGTCTTTTACGTGTTTCTTTGACGATTTAAAATAAAAAATATCCTCAGAGTATTCCTTTCAACTACCTTCCAGCCAAGTCGACAAGATGCACCTTGGAAACAGTCTCCGATGGCATATTGCCTTCGGATAGTCCAGCTTGCACGAATGTAATTGTGAAAATCGCGTGACTCCTACTGCTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTATTA]

[+] EMBL BI516585             [AATATTTTCTTGGATGGTCATATAATAATACATTCAAAAAAGGCCATTTTAATCTATCCATTTAACTATTCATCTAATTCATCTACTTTCATCTTAATATTTTTGATATGTTACTTTTTTAATCTTTATTTATTTATTAGATTTTAATAATAAAAATGAAAGAGAAAGAAAGAGAGAAAGAGAGAAATAGACAGACAGACAGAGAGATAGAGAGAGAAAAAGACAGAGATTAAATAATGCAATAGTCTTTTACGTGTTTCTTTGACGATTTAAAATAAAAAATATCCTCAGAGTATTCCTTTCAACTACCTTCCAGCCAAGTCGACAAGATGCACCTTGGAAACAGTCTCCGATGGCATATTGCCTTCGGATAGTCCAGCTTGCACGAATGTAATTGTGAAAATCGCGTGACTCCTACTGCTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTATTA]


>consensus_1955#1 AATATTTTCTTGGATGGTCATATAATAATACATTCAAAAAAGGCCATTTTAATCTATCCA TTTAACTATTCATCTAATTCATCTACTTTCATCTTAATATTTTTGATATGTTACTTTTTT AATCTTTATTTATTTATTAGATTTTAATAATAAAAATGAAAGAGAAAGAAAGAGAGAAAG AGAGAAATAGACAGACAGACAGAGAGATAGAGAGAGAAAAAGACAGAGATTAAATAATGC AATAGTCTTTTACGTGTTTCTTTGACGATTTAAAATAAAAAATATCCTCAGAGTATTCCT TTCAACTACCTTCCAGCCAAGTCGACAAGATGCACCTTGGAAACAGTCTCCGATGGCATA TTGCCTTCGGATAGTCCAGCTTGCACGAATGTAATTGTGAAAATCGCGTGACTCCTACTG CTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTATTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1955#0      ATCGCGTGACTCCTACTGCTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTA 60
consensus_1955#1      -------------------------------AATATTTTCTTGG-ATGGTCATATA-ATA 27
                                                       * * * ****   * **  * *   **

consensus_1955#0      TTACCTCTCACCATG--CATTCCTACGTACAGAGAGCAACTTTTTATTTAAAAACTATCT 118
consensus_1955#1      ATACATTCAAAAAAGGCCATTTTAATCTATCCATT-TAACTATTCATCTAA--TTCATCT 84
                       *** *   *  * *  ****   *  **   *    **** ** ** ***     ****

consensus_1955#0      CTCTCAGGAGTATCGTAGTGGAACGAATAGGAAGTGGAGGACGGGTTCATTTACCTGAAT 178
consensus_1955#1      ACTTTCATCTTAATATTTTTGA-TATGTTACTTTTTTAATCTTTATTTATTTATTAGATT 143
                         *      **   *  * **     *      *  *       ** *****   ** *

consensus_1955#0      GTCTGAATAATCATATACGAGGTGGCTTGACAGGTCTTGGACATAAGGTCCTCTTTTAGG 238
consensus_1955#1      TTAATAATAAAAATGAAAGAGAAAGAAAGAGAGAAAGAGAGAAATAGACAGACAGACAGA 203
                       *   *****  **  * ***   *   ** **     *   *  **     *    ** 

consensus_1955#0      ATGTTCCCGCACTCTGAGAGAATGAGACTGTGACTGATCCAGTCTTAGCAAATCCCTTAC 298
consensus_1955#1      GAG-------ATAGAGAGAGAAAAAGACAGAGATTAAATAATGC---AATAGTCTTTTAC 253
                        *       *    *******  **** * ** * *   *  *      * **  ****

consensus_1955#0      -TCTTTCATTGTGTATTTCCAGGAAAGATACCTCGGTTCTATACGATGCTCCGCTCTCTT 357
consensus_1955#1      GTGTTTCTTTGACGATTTAAAATAAAAA------ATATCCTCAGAGTATTCCTTTCAACT 307
                       * **** ***   ****  *  *** *         **   *   *  ***  **   *

consensus_1955#0      TACCAGCAGCCATTCTAGCAAATAATGTCTTACAAATCCGCGGTATCAATCCTTGAGCTT 417
consensus_1955#1      ACCTTCCAGCCAAGTCGACAAGATGCACCTTGGAAACAGTCTCCGATGGCATATTGCCTT 367
                        *   ******      ***       ***  ***    *            *   ***

consensus_1955#0      CCTAAGGTTTAAACATAATAAAAAATTATTAGAAGTAAAAAATAGAATTATTTGTGTTAT 477
consensus_1955#1      CGGATAGTCCAG-CTTGCACGAATGTAATTGTG-----AAAATCGCGTGACTCCTACTGC 421
                      *  *  **  *  * *     **  * ***        ***** *  * * *  *  *  

consensus_1955#0      AACAAATTATTGTTATATAATGAGATTATATTTTGAATCAAAGAAAAATTATAGAAATCA 537
consensus_1955#1      T-CACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTATTA--------------- 465
                        ** **  **  * * *        * ** **     *  *  *               

consensus_1955#0      GGTGAAAGTTTTAGGCAAACGTTTTGCAATAATTTCTGTACTGATGAAAAGTGAATTGCG 597
consensus_1955#1      ------------------------------------------------------------
                                                                                  

consensus_1955#0      ATTTAAAGGCATTAGAGCGTATTA 621
consensus_1955#1      ------------------------
                                              




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)