These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [ATCGCGTGACTCCTACTGCTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTATTACCTCTCACCATGCATTCCTACGTACAGAGAGCAACTTTTTATTTAAAAACTATCTCTCTCAGGAGTATCGTAGTGGAACGAATAGGAAGTGGAGGACGGGTTCATTTACCTGAATGTCTGAATAATCATATACGAGGTGGCTTGACAGGTCTTGGACATAAGGTCCTCTTTTAGGATGTTCCCGCACTCTGAGAGAATGAGACTGTGACTGATCCAGTCTTAGCAAATCCCTTACTCTTTCATTGTGTATTTCCAGGAAAGATACCTCGGTTCTATACGATGCTCCGCTCTCTTTACCAGCAGCCATTCTAGCAAATAATGTCTTACAAATCCGCGGTATCAATCCTTGAGCTTCCTAAGGTTTAAACATAATAAAAAATTATTAGAAGTAAAAAATAGAATTATTTGTGTTATAACAAATTATTGTTATATAATGAGATTATATTTTGAATCAAAGAAAAATTATAGAAATCAGGTGAAAGTTTTAGGCAAACGTTTTGCAATAATTTCTGTACTGATGAAAAGTGAATTGCGATTTAAAGGCATTAGAGCGTATTA] [+] EMBL BI504523 [ATCGCGTGACTCCTACTGCTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTATTACCTCTCACCATGCATTCCTACGTACAGAGAGCAACTTTTTATTTAAAAACTATCTCTCTCAGGAGTATCGTAGTGGAACGAATAGGAAGTGGAGGACGGGTTCATTTACCTGAATGTCTGAATAATCATATACGAGGTGGCTTGACAGGTCTTGGACATAAGGTCCTCTTTTAGGATGTTCCCGCACTCTGAGAGAATGAGACTGTGACTGATCCAGTCTTAGCAAATCCCTTACTCTTTCATTGTGTATTTCCAGGAAAGATACCTCGGTTCTATACGATGCTCCGCTCTCTTTACCAGCAGCCATTCTAGCAAATAATGTCTTACAAATCCGCGGTATCAATCCTTGAGCTTCCTAAGGTTTAAACATAATAAAAAATTATTAGAAGTAAAAAATAGAATTATTTGTGTTATAACAAATTATTGTTATATAATGAGATTATATTTTGAATCAAAGAAAAATTATAGAAATCAGGTGAAAGTTTTAGGCAAACGTTTTGCAATAATTTCTGTACTGATGAAAAGTGAATTGCGATTTAAAGGCATTAGAGCGTATTA] consensusID : consensus_1955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [AATATTTTCTTGGATGGTCATATAATAATACATTCAAAAAAGGCCATTTTAATCTATCCATTTAACTATTCATCTAATTCATCTACTTTCATCTTAATATTTTTGATATGTTACTTTTTTAATCTTTATTTATTTATTAGATTTTAATAATAAAAATGAAAGAGAAAGAAAGAGAGAAAGAGAGAAATAGACAGACAGACAGAGAGATAGAGAGAGAAAAAGACAGAGATTAAATAATGCAATAGTCTTTTACGTGTTTCTTTGACGATTTAAAATAAAAAATATCCTCAGAGTATTCCTTTCAACTACCTTCCAGCCAAGTCGACAAGATGCACCTTGGAAACAGTCTCCGATGGCATATTGCCTTCGGATAGTCCAGCTTGCACGAATGTAATTGTGAAAATCGCGTGACTCCTACTGCTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTATTA] [+] EMBL BI516585 [AATATTTTCTTGGATGGTCATATAATAATACATTCAAAAAAGGCCATTTTAATCTATCCATTTAACTATTCATCTAATTCATCTACTTTCATCTTAATATTTTTGATATGTTACTTTTTTAATCTTTATTTATTTATTAGATTTTAATAATAAAAATGAAAGAGAAAGAAAGAGAGAAAGAGAGAAATAGACAGACAGACAGAGAGATAGAGAGAGAAAAAGACAGAGATTAAATAATGCAATAGTCTTTTACGTGTTTCTTTGACGATTTAAAATAAAAAATATCCTCAGAGTATTCCTTTCAACTACCTTCCAGCCAAGTCGACAAGATGCACCTTGGAAACAGTCTCCGATGGCATATTGCCTTCGGATAGTCCAGCTTGCACGAATGTAATTGTGAAAATCGCGTGACTCCTACTGCTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1955#0 ATCGCGTGACTCCTACTGCTCACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTA 60 consensus_1955#1 -------------------------------AATATTTTCTTGG-ATGGTCATATA-ATA 27 * * * **** * ** * * ** consensus_1955#0 TTACCTCTCACCATG--CATTCCTACGTACAGAGAGCAACTTTTTATTTAAAAACTATCT 118 consensus_1955#1 ATACATTCAAAAAAGGCCATTTTAATCTATCCATT-TAACTATTCATCTAA--TTCATCT 84 *** * * * * **** * ** * **** ** ** *** **** consensus_1955#0 CTCTCAGGAGTATCGTAGTGGAACGAATAGGAAGTGGAGGACGGGTTCATTTACCTGAAT 178 consensus_1955#1 ACTTTCATCTTAATATTTTTGA-TATGTTACTTTTTTAATCTTTATTTATTTATTAGATT 143 * ** * * ** * * * ** ***** ** * consensus_1955#0 GTCTGAATAATCATATACGAGGTGGCTTGACAGGTCTTGGACATAAGGTCCTCTTTTAGG 238 consensus_1955#1 TTAATAATAAAAATGAAAGAGAAAGAAAGAGAGAAAGAGAGAAATAGACAGACAGACAGA 203 * ***** ** * *** * ** ** * * ** * ** consensus_1955#0 ATGTTCCCGCACTCTGAGAGAATGAGACTGTGACTGATCCAGTCTTAGCAAATCCCTTAC 298 consensus_1955#1 GAG-------ATAGAGAGAGAAAAAGACAGAGATTAAATAATGC---AATAGTCTTTTAC 253 * * ******* **** * ** * * * * * ** **** consensus_1955#0 -TCTTTCATTGTGTATTTCCAGGAAAGATACCTCGGTTCTATACGATGCTCCGCTCTCTT 357 consensus_1955#1 GTGTTTCTTTGACGATTTAAAATAAAAA------ATATCCTCAGAGTATTCCTTTCAACT 307 * **** *** **** * *** * ** * * *** ** * consensus_1955#0 TACCAGCAGCCATTCTAGCAAATAATGTCTTACAAATCCGCGGTATCAATCCTTGAGCTT 417 consensus_1955#1 ACCTTCCAGCCAAGTCGACAAGATGCACCTTGGAAACAGTCTCCGATGGCATATTGCCTT 367 * ****** *** *** *** * * *** consensus_1955#0 CCTAAGGTTTAAACATAATAAAAAATTATTAGAAGTAAAAAATAGAATTATTTGTGTTAT 477 consensus_1955#1 CGGATAGTCCAG-CTTGCACGAATGTAATTGTG-----AAAATCGCGTGACTCCTACTGC 421 * * ** * * * ** * *** ***** * * * * * * consensus_1955#0 AACAAATTATTGTTATATAATGAGATTATATTTTGAATCAAAGAAAAATTATAGAAATCA 537 consensus_1955#1 T-CACATCGTTCATGTTTGTGCTTGCTGTAGTTCTGTGCGTATTA--------------- 465 ** ** ** * * * * ** ** * * * consensus_1955#0 GGTGAAAGTTTTAGGCAAACGTTTTGCAATAATTTCTGTACTGATGAAAAGTGAATTGCG 597 consensus_1955#1 ------------------------------------------------------------ consensus_1955#0 ATTTAAAGGCATTAGAGCGTATTA 621 consensus_1955#1 ------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |