These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [AGATTCAAAATTATACAATTTTATTTACATGAGCTAGTTGCTAATTGAATGTTCGCGCTTCTTTAAGCAGATAGAAACAATATTTTAAAATAGTTCTTATTTTATTTAAAATAATTAATTAAAAGTTAAAAATTAATATTTTGGCAATTAAAATCTTTCTATTTTCTATTTAGAAAATTCGATTTCCAGAAAACTCTATATGTTTCTTGATTATCGTTACCCCCACTTTTCATGGCGTATGAAATATATATTCGCGCGTAGGAATCATTATAATAGAATTCGAACGAAACTATTGCATAAACATTTAGCCAAACATCTTATTGTAGTCAAGCAGTACGTGAGTGAATAAAAAAGCTTTATAAAAGAAAAGAAAATTTTAAGTGAATTATTTTATATATATATTTTTATTATATATATAGATTAAATTTATTTTGAAATTAAAAGAAAAACAATGTCTTTTTTGCCGGTACTTCTTAACTGGGGGGAGGATTTGAAGACACCTTATTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCTTTCTTTCCTGACGATA] [+] EMBL BI509274 [AGATTCAAAATTATACAATTTTATTTACATGAGCTAGTTGCTAATTGAATGTTCGCGCTTCTTTAAGCAGATAGAAACAATATTTTAAAATAGTTCTTATTTTATTTAAAATAATTAATTAAAAGTTAAAAATTAATATTTTGGCAATTAAAATCTTTCTATTTTCTATTTAGAAAATTCGATTTCCAGAAAACTCTATATGTTTCTTGATTATCGTTACCCCCACTTTTCATGGCGTATGAAATATATATTCGCGCGTAGGAATCATTATAATAGAATTCGAACGAAACTATTGCATAAACATTTAGCCAAACATCTTATTGTAGTCAAGCAGTACGTGAGTGAATAAAAAAGCTTTATAAAAGAAAAGAAAATTTTAAGTGAATTATTTTATATATATATTTTTATTATATATATAGATTAAATTTATTTTGAAATTAAAAGAAAAACAATGTCTTTTTTGCCGGTACTTCTTAACTGGGGGGAGGATTTGAAGACACCTTATTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCTTTCTTTCCTGACGATA] consensusID : consensus_1992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [TTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCTTTCTTTCCTGACGATACTGATATTTTAATGCTAAGACCTCGTCGCTGTTTTCGCAGATATCAGCCTTATAAAAGAATTATAGATCGTACATCCAGTGGAACATCTACAATACAAGCTGATAAAAATAAATTTCAAGTATCATTAGATGTTCAACAATTTGCTCCAGAAGAAATGACTGTTAAAGTTGTAGGAAAGAATGTAGTTGTCGAAGGCAAACATGAAGAAAAACAGGATGAACATGGATGGATATCCAGGCATTTTGTACGAAAGTATATTGTACCAGAACAATGTGATATTGATCAATTAAAATCAAATTTATCTTCTGATGGAATATTGATGATCACTGCACCAAGAAAAGAGATTGATCCAACATCAAAGAATGAAAGAATTATTAAAATTCAAATTACAGGAAAACCTGCTTTAAGAGATGATACAAAACCAATTGAAAAACAAAAGGAAAATCAAGTTCAGAAGAATCCCATATCACAAAGAGGACAAGAACA] [+] EMBL BI504428 [TTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCTTTCTTTCCTGACGATACTGATATTTTAATGCTAAGACCTCGTCGCTGTTTTCGCAGATATCAGCCTTATAAAAGAATTATAGATCGTACATCCAGTGGAACATCTACAATACAAGCTGATAAAAATAAATTTCAAGTATCATTAGATGTTCAACAATTTGCTCCAGAAGAAATGACTGTTAAAGTTGTAGGAAAGAATGTAGTTGTCGAAGGCAAACATGAAGAAAAACAGGATGAACATGGATGGATATCCAGGCATTTTGTACGAAAGTATATTGTACCAGAACAATGTGATATTGATCAATTAAAATCAAATTTATCTTCTGATGGAATATTGATGATCACTGCACCAAGAAAAGAGATTGATCCAACATCAAAGAATGAAAGAATTATTAAAATTCAAATTACAGGAAAACCTGCTTTAAGAGATGATACAAAACCAATTGAAAAACAAAAGGAAAATCAAGTTCAGAAGAATCCCATATCACAAAGAGGACAAGAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1992#0 AGATTCAAAATTATACAATTTTATTTACATGAGCTAGTTGCTAATTGAATGTTCGCGCTT 60 consensus_1992#1 --TTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCT 58 * ** ** ** * ** * * * ** * * * * * consensus_1992#0 CTTTAAGCAGATAGAAACAATATTTTAA----AATAGTTC-TTATTTTATTTAAAATAAT 115 consensus_1992#1 TTCTTTCCTGACGATACTGATATTTTAATGCTAAGACCTCGTCGCTGTTTTCGCAGATAT 118 * * * ** * ********* ** * ** * * * ** * ** consensus_1992#0 TAA--TTAAAAGTTAAAAATTAATATTTTGGCAATTAAAATCTTTCTATTTTCTATTTAG 173 consensus_1992#1 CAGCCTTATAAAAGAATTATAGATCGTACATCCAGTGGAACATCTACAATACAAGCTGAT 178 * *** ** ** ** ** * * * * ** * * * * * * consensus_1992#0 AAAATTCGATTTCCAGAAAACTCTATATGTTTCTTGATTATCGTTACCC----CCACTTT 229 consensus_1992#1 AAAAATAAATTTCAAGTAT-CATTAGATGTTCAACAATTTGCTCCAGAAGAAATGACTGT 237 **** * ***** ** * * ** ***** *** * * *** * consensus_1992#0 TCATGGCGTATGAAATA-TATATTCGCGCGTAGGAATCATTATAATAGAATTCGAACGAA 288 consensus_1992#1 TAAAGTTGTAGGAAAGAATGTAGTTGTCGAAGGCAAACATGA--AGAAAAACAGGATGAA 295 * * * *** **** * * ** * * * ** *** * * * ** * * *** consensus_1992#0 ACTATTGCATAAACATTTAGCCAAACATCTTAT-TGTAGTCAAGCAGTACGTGAGTGAAT 347 consensus_1992#1 -------CATGGATGGATATCCAGGCATTTTGTACGAAAGTATATTGTACCAGAAC-AAT 347 *** * ** *** *** ** * * * * **** ** *** consensus_1992#0 AAAAAAGCTTTATAAAAGAAAAGAAAATTTTAAGTGAATTATTTTATATAT-ATATTTTT 406 consensus_1992#1 GTGATA--TTGATCAATTAAAATCAAATTTATCTTCTGATGGAATATTGATGATCACTGC 405 * * ** ** ** **** ****** * * *** ** ** * consensus_1992#0 ATTATATATATAGATTAAATTTATTTTGAA-ATTAAAAGAAAAACAATGTCTTTTTTGCC 465 consensus_1992#1 ACCAAGAAAAGAGATTGATCCAACATCAAAGAATGAAAGAATTATTAAAATTCAAATTAC 465 * * * * ***** * * * ** * * ****** * * * * * consensus_1992#0 GGTACTTCTTAACTGGGGGGAGGATTTGAAGACACCTTATTATCCCTTTGA----CCAGC 521 consensus_1992#1 AGGAAAACCTGCTTTAAGAGATGATACAAAACCAATTGAAAAACAAAAGGAAAATCAAGT 525 * * * * * * ** *** ** ** * * * * ** * ** consensus_1992#0 TTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCTTTCTTTCCTGACGATA 578 consensus_1992#1 TCAGAAGAATCCCAT--ATCACAAAGAGGACAAGAACA------------------- 561 * ** * **** * * * * **** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |