These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [CAATTGAACATACAAATCGATTGCATCGTCCTCTTTTCTCTTGTCTCATAAGAAGAAATGAATTCATGAATTACTTTTACAGAAATACGAAAATCTGTTGCGAAAATTCTGAAGAATTCGAAAAAGATCAGCCTCATTATTATTTTTTGAATTTTAATTTTAAAAAAACTGTGTCGTTCGTTGCATGCTCGTTCAAAATTAGTGATCGAATATCAATCGAAGATCAATCGGACGCTTGACGTTCGTTCGACGTAGCAGTTCCATCGCGACCGATACCGCGTGCAATAAAACAAAATATGTAAACAATATTAATATCATTATATACAACATTTTTACGGCATATACGAATACGATGTAGAGAAAAGCAGGTGAAACAAGTTTAGGATAATATTACTTGTTGTTGTCTACCATAGCGTTGTAGTTATATACAATACAGGTAGAAAATTATAGGCAAGCCGAAGCGAATGTATGAAAGAACAAATGCGAGAGTGTAACGAAAGTGAGAGAGAAAAAAATGCATGTGAGCAAAAATGAACGTGAGAGAGAGAGAGAGAGAGAGAGATGCGAATGAG] [+] EMBL BI514354 [CAATTGAACATACAAATCGATTGCATCGTCCTCTTTTCTCTTGTCTCATAAGAAGAAATGAATTCATGAATTACTTTTACAGAAATACGAAAATCTGTTGCGAAAATTCTGAAGAATTCGAAAAAGATCAGCCTCATTATTATTTTTTGAATTTTAATTTTAAAAAAACTGTGTCGTTCGTTGCATGCTCGTTCAAAATTAGTGATCGAATATCAATCGAAGATCAATCGGACGCTTGACGTTCGTTCGACGTAGCAGTTCCATCGCGACCGATACCGCGTGCAATAAAACAAAATATGTAAACAATATTAATATCATTATATACAACATTTTTACGGCATATACGAATACGATGTAGAGAAAAGCAGGTGAAACAAGTTTAGGATAATATTACTTGTTGTTGTCTACCATAGCGTTGTAGTTATATACAATACAGGTAGAAAATTATAGGCAAGCCGAAGCGAATGTATGAAAGAACAAATGCGAGAGTGTAACGAAAGTGAGAGAGAAAAAAATGCATGTGAGCAAAAATGAACGTGAGAGAGAGAGAGAGAGAGAGAGATGCGAATGAG] consensusID : consensus_2118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [CATCGTCCTCTTTTCTCTTGTCTCATAAGAAGATATGAATTCATGAATTACTTTTACAGAAATACGAAAATCTGTAAGAATTCGAAAAAGATCAGCCACCCGTTATTATTTTTTGAATTTTAATTTTAAAAAAACTGTGTCGTTCGTTGCATGCTCGTTCAAAATTAGTGATCGAATATCAATCGAAGATCAATCGGACGCTTGACGTTCGTTCGACGTAGCAGTTCCATCGCGACCGATACCGCGTGCAATAAAACAAAATATGTAAACAATATTAATATCATTATATACAACATTTTTACGGCATATACGAATACGATGTAGAGAAAAGCAGGTGAAACAAGTTTAGGATAATATTACTTGTTGTTGTCTACCATAGCGTTGTAGTTATATACAATACAGGTAGAAAATTATAGGCAAGCCGAAGCGAATGTGTGAAAGAACAAATGCGAGAGTGTAACGTGAGAGAGAAAAAAATGCATGTGAGCAAAAATGAACGTGAAAGAGAGAGAGAGAGA] [+] EMBL BI517179 [CATCGTCCTCTTTTCTCTTGTCTCATAAGAAGATATGAATTCATGAATTACTTTTACAGAAATACGAAAATCTGTAAGAATTCGAAAAAGATCAGCCACCCGTTATTATTTTTTGAATTTTAATTTTAAAAAAACTGTGTCGTTCGTTGCATGCTCGTTCAAAATTAGTGATCGAATATCAATCGAAGATCAATCGGACGCTTGACGTTCGTTCGACGTAGCAGTTCCATCGCGACCGATACCGCGTGCAATAAAACAAAATATGTAAACAATATTAATATCATTATATACAACATTTTTACGGCATATACGAATACGATGTAGAGAAAAGCAGGTGAAACAAGTTTAGGATAATATTACTTGTTGTTGTCTACCATAGCGTTGTAGTTATATACAATACAGGTAGAAAATTATAGGCAAGCCGAAGCGAATGTGTGAAAGAACAAATGCGAGAGTGTAACGTGAGAGAGAAAAAAATGCATGTGAGCAAAAATGAACGTGAAAGAGAGAGAGAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2118#0 CAATTGAACATACAAATCGATTGCATCGTCCTCTTTTCTCTTGTCTCATAAGAAGAAATG 60 consensus_2118#1 -----------------------CATCGTCCTCTTTTCTCTTGTCTCATAAGAAGATATG 37 ********************************* *** consensus_2118#0 AATTCATGAATTACTTTTACAGAAATACGAAAATCTGTTGCGAAAATTCTGAAGAATTCG 120 consensus_2118#1 AATTCATGAATTACTTTTACAGAAATACGAAAATCTGT-------------AAGAATTCG 84 ************************************** ********* consensus_2118#0 AAAAAGATCAGCC--TCATTATTATTTTTTGAATTTTAATTTTAAAAAAACTGTGTCGTT 178 consensus_2118#1 AAAAAGATCAGCCACCCGTTATTATTTTTTGAATTTTAATTTTAAAAAAACTGTGTCGTT 144 ************* * ****************************************** consensus_2118#0 CGTTGCATGCTCGTTCAAAATTAGTGATCGAATATCAATCGAAGATCAATCGGACGCTTG 238 consensus_2118#1 CGTTGCATGCTCGTTCAAAATTAGTGATCGAATATCAATCGAAGATCAATCGGACGCTTG 204 ************************************************************ consensus_2118#0 ACGTTCGTTCGACGTAGCAGTTCCATCGCGACCGATACCGCGTGCAATAAAACAAAATAT 298 consensus_2118#1 ACGTTCGTTCGACGTAGCAGTTCCATCGCGACCGATACCGCGTGCAATAAAACAAAATAT 264 ************************************************************ consensus_2118#0 GTAAACAATATTAATATCATTATATACAACATTTTTACGGCATATACGAATACGATGTAG 358 consensus_2118#1 GTAAACAATATTAATATCATTATATACAACATTTTTACGGCATATACGAATACGATGTAG 324 ************************************************************ consensus_2118#0 AGAAAAGCAGGTGAAACAAGTTTAGGATAATATTACTTGTTGTTGTCTACCATAGCGTTG 418 consensus_2118#1 AGAAAAGCAGGTGAAACAAGTTTAGGATAATATTACTTGTTGTTGTCTACCATAGCGTTG 384 ************************************************************ consensus_2118#0 TAGTTATATACAATACAGGTAGAAAATTATAGGCAAGCCGAAGCGAATGTATGAAAGAAC 478 consensus_2118#1 TAGTTATATACAATACAGGTAGAAAATTATAGGCAAGCCGAAGCGAATGTGTGAAAGAAC 444 ************************************************** ********* consensus_2118#0 AAATGCGAGAGTGTAACGAAAGTGAGAGAGAAAAAAATGCATGTGAGCAAAAATGAACGT 538 consensus_2118#1 AAATGCGAGAGTGTAACG----TGAGAGAGAAAAAAATGCATGTGAGCAAAAATGAACGT 500 ****************** ************************************** consensus_2118#0 GAGAGAGAGAGAGAGAGAGAGAGATGCGAATGAG 572 consensus_2118#1 GAAAGAGAGAGAGAGAGA---------------- 518 ** *************** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |