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Apis mellifera
cluster # 2196 cluster # 2196       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2196#0 length = 601 sequences # 1  
consensus_2196#1 length = 363 sequences # 1  

consensusID : consensus_2196#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence
                              [ACTCTCTCGATCGGCGCACATCGCCGTCCCAGATGTCCAGCTCGTCGTCCAGCTCGTCCTTGCCATCGTTGGACGTGTCGTTGAGCTCGGGGGGCGGGAGCGGAGCGGCGACGAGCCAACAGAACCGATTGGCACCGCCGACCGCCATCACCGCGAACGGGAACAGCCCCAACGTGGTCGGCCTGTCCAGCCCGAGCCACTCGCACAAGAGTTCGCCCGACTTTTACATCATAAAAGTGACGATGGAGAGCGACAACGTGGAGACGGAGGGTGTGGTGCTGTACAAATCCATCATGCTCTCGAACAACGAGAGGACGCCGCAAGTGATACGGAACGCTATGCTCAAGTTGGGAATAGAGGGGAGCCCGGACCAGTACACGCTGGCCCAGGTTCTGCCCGATCGTGAGATGCTTCTGCCAAATTCGGCCAACGTTTATTACGCCGTCAACACCGCGCACAATCTCAACTTCATTCTACGNNNTAGAAGGGAGCCTAACGAGAGCGCCACCGAAAGTCCTAAGAGCAAGACGAGTCACAAGCGGTAGTGTCGAAGAGNTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATT]

[+] EMBL BI504088             [ACTCTCTCGATCGGCGCACATCGCCGTCCCAGATGTCCAGCTCGTCGTCCAGCTCGTCCTTGCCATCGTTGGACGTGTCGTTGAGCTCGGGGGGCGGGAGCGGAGCGGCGACGAGCCAACAGAACCGATTGGCACCGCCGACCGCCATCACCGCGAACGGGAACAGCCCCAACGTGGTCGGCCTGTCCAGCCCGAGCCACTCGCACAAGAGTTCGCCCGACTTTTACATCATAAAAGTGACGATGGAGAGCGACAACGTGGAGACGGAGGGTGTGGTGCTGTACAAATCCATCATGCTCTCGAACAACGAGAGGACGCCGCAAGTGATACGGAACGCTATGCTCAAGTTGGGAATAGAGGGGAGCCCGGACCAGTACACGCTGGCCCAGGTTCTGCCCGATCGTGAGATGCTTCTGCCAAATTCGGCCAACGTTTATTACGCCGTCAACACCGCGCACAATCTCAACTTCATTCTACGNNNTAGAAGGGAGCCTAACGAGAGCGCCACCGAAAGTCCTAAGAGCAAGACGAGTCACAAGCGGTAGTGTCGAAGAGNTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATT]


>consensus_2196#0 ACTCTCTCGATCGGCGCACATCGCCGTCCCAGATGTCCAGCTCGTCGTCCAGCTCGTCCT TGCCATCGTTGGACGTGTCGTTGAGCTCGGGGGGCGGGAGCGGAGCGGCGACGAGCCAAC AGAACCGATTGGCACCGCCGACCGCCATCACCGCGAACGGGAACAGCCCCAACGTGGTCG GCCTGTCCAGCCCGAGCCACTCGCACAAGAGTTCGCCCGACTTTTACATCATAAAAGTGA CGATGGAGAGCGACAACGTGGAGACGGAGGGTGTGGTGCTGTACAAATCCATCATGCTCT CGAACAACGAGAGGACGCCGCAAGTGATACGGAACGCTATGCTCAAGTTGGGAATAGAGG GGAGCCCGGACCAGTACACGCTGGCCCAGGTTCTGCCCGATCGTGAGATGCTTCTGCCAA ATTCGGCCAACGTTTATTACGCCGTCAACACCGCGCACAATCTCAACTTCATTCTACGNN NTAGAAGGGAGCCTAACGAGAGCGCCACCGAAAGTCCTAAGAGCAAGACGAGTCACAAGC GGTAGTGTCGAAGAGNTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGAT T



consensusID : consensus_2196#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence
                              [TGTCGAAGAGGTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATTCGGATAATTTCATCGCGTTGCGTTGGGCGGAAGCGATGTCGGCCTCGATTATTTATTCTTCTCTTCCCGCGGGGGAACGTCTCGAGAAAGGAGGAATCTCGTTAGGTTTGCGATGATGCATTTTTCTTTTTTTTTTTTTTTTTTCGTACGTCGTTTTATCCATGACAGTCCGTTAATAACAATGTGTAATATCGCGATACTTTTTTTATTTATTCTTTCCTTTCCTTACGTGGTAATTGTAAACAACGCGTTAACAGCGATCGAATCGGATAACATTGATCGTCGATCAAGCTGTCCTTCCCGTAAA]

[+] EMBL BI503874             [TGTCGAAGAGGTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATTCGGATAATTTCATCGCGTTGCGTTGGGCGGAAGCGATGTCGGCCTCGATTATTTATTCTTCTCTTCCCGCGGGGGAACGTCTCGAGAAAGGAGGAATCTCGTTAGGTTTGCGATGATGCATTTTTCTTTTTTTTTTTTTTTTTTCGTACGTCGTTTTATCCATGACAGTCCGTTAATAACAATGTGTAATATCGCGATACTTTTTTTATTTATTCTTTCCTTTCCTTACGTGGTAATTGTAAACAACGCGTTAACAGCGATCGAATCGGATAACATTGATCGTCGATCAAGCTGTCCTTCCCGTAAA]


>consensus_2196#1 TGTCGAAGAGGTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATTCGGA TAATTTCATCGCGTTGCGTTGGGCGGAAGCGATGTCGGCCTCGATTATTTATTCTTCTCT TCCCGCGGGGGAACGTCTCGAGAAAGGAGGAATCTCGTTAGGTTTGCGATGATGCATTTT TCTTTTTTTTTTTTTTTTTTCGTACGTCGTTTTATCCATGACAGTCCGTTAATAACAATG TGTAATATCGCGATACTTTTTTTATTTATTCTTTCCTTTCCTTACGTGGTAATTGTAAAC AACGCGTTAACAGCGATCGAATCGGATAACATTGATCGTCGATCAAGCTGTCCTTCCCGT AAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2196#0      ACTCTCTCGATCGGCGCACATCGCCGTCCCAGATGTCCAGCTCGTCGTCCAGCTCGTCCT 60
consensus_2196#1      ------------------------------------------------------------
                                                                                  

consensus_2196#0      TGCCATCGTTGGACGTGTCGTTGAGCTCGGGGGGCGGGAGCGGAGCGGCGACGAGCCAAC 120
consensus_2196#1      ------------------------------------------------------------
                                                                                  

consensus_2196#0      AGAACCGATTGGCACCGCCGACCGCCATCACCGCGAACGGGAACAGCCCCAACGTGGTCG 180
consensus_2196#1      ------------------------------------------------------------
                                                                                  

consensus_2196#0      GCCTGTCCAGCCCGAGCCACTCGCACAAGAGTTCGCCCGACTTTTACATCATAAAAGTGA 240
consensus_2196#1      ---------------------TGTCGAAGAGGTTA--GGATTATTATTACGTACGTTTGA 37
                                            *   ***** *     ** * ***   * **    ***

consensus_2196#0      CGATGGAGAGCGACAA---CGTGGAGACGGAGGGTGTGGTGCTGTACA-AATCCATCATG 296
consensus_2196#1      TAATCGATATTGATGGATTCGGATAATTTCATCGCGTTGCGTTGGGCGGAAGCGATGTCG 97
                        ** ** *  **      **   *     *  * ** * * **  *  ** * **   *

consensus_2196#0      CTCTCGAACAACGAGAGGACGCCGCAAGTGATACGGAACGCTATGCTCAAGTTGGGAATA 356
consensus_2196#1      GCCTCGATTATTTATTCTTCTCTTCCCGCGG--GGGAACGTCTCGAGAAAGG-AGGAATC 154
                        *****  *   *     * *  *  * *    ******    *   ***   ***** 

consensus_2196#0      GAGGGGAGCCCGGACCAGTACACGCTGGCCCAGGTTCTGCCCGATCGTGAGATGCTTCTG 416
consensus_2196#1      TCGTTAGGTTTGCGATGATGCATTTTTCTTTTTTTTTTTTTTTTTTCGTACGTCGTTTTA 214
                        *    *   *      * **   *        ** *      *    *  *  ** * 

consensus_2196#0      CCAAATTCGGCCAACGTTTATTACGCCGT-CAACACCGCGCACAATCTCAACTTCATTCT 475
consensus_2196#1      TCCATGACAGTC--CGTTAATAACAATGTGTAATATCGCGATACTTTTTTTATTTATTCT 272
                       * *   * * *  **** ** **   **  ** * ****     * *    ** *****

consensus_2196#0      ACGNNNTAGAAGGGAGCCTAACGAGAGCGCCACCGAAAGTCCTAAGAGCAAGACGAGTCA 535
consensus_2196#1      TTCCTTTCCTTACGTGGTAATTGTAAACAACGCGTTAA---CAGCGATCGAATCGGATAA 329
                            *      * *   *  *  * *  * *   **   *   ** * *  **  * *

consensus_2196#0      CAAGCGGTAGTGTCGAAGAGNTTAGGATTATTATTACGTACGTTTGATAATCGATATTGA 595
consensus_2196#1      CAT-TGAT--CGTCGATCAAGCTGTCCTTCCCGTAAA----------------------- 363
                      **   * *   *****  *   *    **    * *                        

consensus_2196#0      TGGATT 601
consensus_2196#1      ------
                            




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)