These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 608 fasta sequence [GAAGAGAAGATACCGACTGGTAACTCTGCGCCCAAAAAGTTTTCCCTTCGACCGATTTATGCCGCCGCTGCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCC-TTTCCTTTTC-TTTTTTATTTTTCCCTCTCTCTCACGATGGTCATCTCTTTTCGACTCATTCTTGCATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATTCCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTTCTTTTCTCTTGCTTCTTTTCCTTCTTCTTTGTCTTCTTTCTTCTTTTCGTGCATCATCTCGTCGTTTCTTCTCTCCCTGATGCTCTTTACCGTTCACCTTTCGTAGTCTCCTTCCTTTTCGCGTTTTTTCCATCCATGTCTTCTCTCCTTTTCCCTATAGGTCTTTGCCGCTCTTTGTTTCCTTTTCTTGTTCACTTGTCTCTCAGGTCTCTGCTATGCAATGCTTGGCCAATACACAAG-A-A-ATATATATATATATATGCGATGGTTACTCTGTGTATGCACACACAGTGGCCGCCAGCCTATCGTGGCGCATGCCACGACCTCGAGTTGTCC] [+] EMBL BI511401 [GAAGAGAAGATACCGACTGGTAACTCTGCGCCCAAAAAGTTTTCCCTTCGACCGATTTATGCCGCCGCTGCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCC TTTCCTTTTC TTTTTTATTTTTCCCTCTCTCTCACGATGGTCATCTCTTTTCGACTCATTCTTGCATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATTCCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTTCTTTTCTCTTGCTTCTTTTCCTTCTTCTTTGTCTTCTTTCTTCTTTTCGTGCATCATCTCGTCGTTTCTTCTCTCCCTGATGCTCTTTACCGTTCACCTTTCGTAGTCTCCTTCCTTTTCGCGTTTTTTCCATCCATGTCTTCTCTCCTTTTCCCTATAGGTCT ] [+] EMBL BI505786 [ CAAAAAGTTTTCCCTTCGACCGATTTATGCCGCCGCTGCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCC TTTCCTTTTC TTTTTTATTTTTCCCTCTCTCTCACGATGGTCATCTCTTTTCGACTCATTCTTGCATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATTCCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTTCTTTTCTCTTGCTTCTTTTCCTTCTTCTTTGTCTTCTTTCTTCTTTTCGTGCATCATCTCGTCGTTTCTTCTCTCCCTGATGCTCTTTACCGTTCACCTTTCGTAGTCTCCTTCCTTTTCGCGTTTTTTCCATCCATGTCTTCTCTCCTTTTCCCTATAGGTCTTTGCCGCTCTTTGTTTCCTTTTCTTGTTCACTTGTCTCTCAGGTCTCTGCTATGCAATGCTTGGCCAATACACAAGTATATATATATATATATATATGCGATGGTTACTCTG ] [+] EMBL BI517143 [ AAGTTTTCCCTTCGACCGATTTATGCCGCCGCTGCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCC TTTCCTTTTCTTTTTTTATTTTTCCCTCTCTCTCACGATGNNCATCTCTTTTCGACTCATTCTTGCATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATTCCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTTCTTTTCTCTTGCTTC ] [+] EMBL BI508960 [ GCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCCTTTTCCTTTTC TTTTTTATTTTTCCCTCTCTCTCACGATGGTCATCTCTTTTCGACTCATTCTTGCATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATTCCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTTCTTTTCTCTTGCTTCTTTTCCTTCTTCTTTGTCTTCTTTCTTCTTTTCGTGCATCATCTCGTCGTTTCTTCTCTCCCTGATGCTCTTTACCGTTCACCTTTCGTAGTCTCCTTCCTTTTCGCGTTTTTTCCATCCATGTCTTCTCTCCTTTTCCCTATAGGTCTTTGCCGCTCTTTGTTTCCTTTTCTTGTTCACTTGTCTCTCAGGTCTCTGCTATGCAATGCTTGGCCAATACACAAG TATATATATATATATGCGATGGTTACTCTGTGTATGCACACACAGTGGCCGCCAGCCTATCGTGGCGCATGCCACGACCTCGAGTTGTCC] consensusID : consensus_226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [TTTCTAACACCAAGCCAAGTTTTTTTTATTCATCATTTAAAAAAATCTTCCAATTTCTATCATACTTATTTTTAATTAATTTTTTCTCGATTACATTTTATTTATACATATGCATATATCACAAGAATTCTTACTTTTTTCTTTTTTCTTAACATTAATATACGCGAACAAGTTATATACAAGATTGTCTTTAGAATATTTGTGTTACCGTTCTGTTCTAGTCTTACATTGAAGCTAAAGCGCGGAATCAGAAGCGTGGCAGGGAAATGAACTGTTATTATCAACACTGTCTGCGTTTAATCGTAAGTTACAACGTCTGCATACTTCTCGTGGCGGCGAAAGGACGATAGGACAACTCGAGGTCGTGGCATGCGCCACGATAGGCTGGCGGCCACTGTTTGTGCATACACAGAGTAACCATCGCATATATA] [+] EMBL BI502998 [TTTCTAACACCAAGCCAAGTTTTTTTTATTCATCATTTAAAAAAATCTTCCAATTTCTATCATACTTATTTTTAATTAATTTTTTCTCGATTACATTTTATTTATACATATGCATATATCACAAGAATTCTTACTTTTTTCTTTTTTCTTAACATTAATATACGCGAACAAGTTATATACAAGATTGTCTTTAGAATATTTGTGTTACCGTTCTGTTCTAGTCTTACATTGAAGCTAAAGCGCGGAATCAGAAGCGTGGCAGGGAAATGAACTGTTATTATCAACACTGTCTGCGTTTAATCGTAAGTTACAACGTCTGCATACTTCTCGTGGCGGCGAAAGGACGATAGGACAACTCGAGGTCGTGGCATGCGCCACGATAGGCTGGCGGCCACTGTTTGTGCATACACAGAGTAACCATCGCATATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_226#0 GAAGAGAAGATACCGACTGGTAACTCTGCGCCCAAAAAGTTTTCCCTTCGACCGATTTAT 60 consensus_226#1 ------------------------------------------------------------ consensus_226#0 GCCGCCGCTGCTTGCAACATCGAACGCCTTGCCATCGAAAAGAACTCTTTTCTCCCTTTC 120 consensus_226#1 ------------------------------------------------------------ consensus_226#0 CTTTTCTTTTTTATTTTTCCCTCTCTCTCACGATGGTCATCTCTTTTCGACTCATTCTTG 180 consensus_226#1 ---------------------TTTCTAACACCA-AGCCAAGTTTTTTTTATTCATCATT- 37 * *** *** * * ** * **** * **** ** consensus_226#0 CATCTCTCTCTTCCGCCTCTCTTTATAAACTTGTCTTTTTCTCCCATTCCTCTCTTCATT 240 consensus_226#1 TAAAAAAATCTTCCAATTTCTATCATACTTATTTTTAATTAATTTTTTCTCGATTACATT 97 * ****** * * *** * * * ** *** * **** consensus_226#0 CCAGTTCCCCTCATTTCCTTTTCTCTTATTATCTT-CTTTTCTCTTGCTTCTTTTCCTTC 299 consensus_226#1 TTATTTATACATATGCATATATCACAAGAATTCTTACTTTTTTCTTTTTTCTTAACATTA 157 * ** * ** * ** * **** ***** **** ***** * ** consensus_226#0 TTCTTTGTCTTCTTTCTTCTTTTCGTGCATCATCTCGTCGTTTCTTCTCTCCCTGATGCT 359 consensus_226#1 ATATACGCGAACAAG-TTATATACAAG-ATTGTCTTTAGAATATTTGTGTTACCGTTCTG 215 * * * * ** * * * * ** *** * ** * * * * * consensus_226#0 CTTTACCGTTCACCTTTCGTAGTCTCCTTCCTTTTCGCGTTTTTTCCATCCATGTCTTCT 419 consensus_226#1 TTCTA--GTCTTACATTGAAGCTAAAGCGCGGAATCAGAAGCGTGGCAGGGAAATGAACT 273 * ** ** * ** * * ** * ** * * ** consensus_226#0 CTCCTTTTCCCTATAGGTCTTTGCCGCTCTTTGTTTCCTTTTCTTGTTCACTTGTCTCTC 479 consensus_226#1 GTTATTATCAACAC---TGTCTGCGTTTAATCGTAAG-TTACAACGTCTGCATACTTCTC 329 * ** ** * * * *** * * ** ** ** * * **** consensus_226#0 AGGTCTCTGCTATGCAATGCTTGGCCAATACACAA--GAAATATATATATATATATGC-G 536 consensus_226#1 --GTGGCGGCGAAAGGACGATAGGACAACTCGAGGTCGTGGCATGCGCCACGATAGGCTG 387 ** * ** * * * * ** *** * * ** *** ** * consensus_226#0 ATGGTTACTCTGTGTATGCACACACAGTGGCCGCCAGCCTATCGTGGCGCATGCCACGAC 596 consensus_226#1 GCGGCCACTGTTTGTGCATACACAGAGTAACCATC-GCATAT-ATA-------------- 431 ** *** * *** ***** *** ** * ** *** * consensus_226#0 CTCGAGTTGTCC 608 consensus_226#1 ------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |