These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TTCTTCTTCATCAATCTGTTGAAACAAAAAGTTATTTTCACCATGTCCCTCTGTGACTGTGACGATGAACTGGAATACAAACTACTCACCAGAGATAAGGTAGAGGATGCTCTGGCTATACAGGCGGAGACTATGAAACAGGAAAACCTGGCAATAGGTTTGGGGATGTTCGAAGAGGATGGAGCCCCGGAAGAAATGAACCTGCTCTTCAGGGAAGTTATCAAAGATGGCATGACGTTGATTGCCGTTGACAAGAGGACCGATGAAGTGGCAGCAGTGGCTTTTAACAAGCTTCGCGCGAAACCGAGGAAGGGCGAGAAGGACGAGCTGGACTCCTTCATAGAGGAGAATCTGAAACATCAGACGTGTAGAAAATTGATCAAGTTTCTCGATGACATCGACAATGTGGATATTTTTGAGAGGTACGATACGAACGGAGCGATGGAGGTGTTCTATCTTGGAACCGATCCACGGTACCAAGGTCGCGGGATCGGCCGTCGAATGATGCAGGAGTGTATCGGGTTCGGTCGAGGGCTGCTCAATGGCACGAGGAGAAGGACATCGATCGACGGGGTTATTCTTGAGCAGAGC] [+] EMBL BI505423 [TTCTTCTTCATCAATCTGTTGAAACAAAAAGTTATTTTCACCATGTCCCTCTGTGACTGTGACGATGAACTGGAATACAAACTACTCACCAGAGATAAGGTAGAGGATGCTCTGGCTATACAGGCGGAGACTATGAAACAGGAAAACCTGGCAATAGGTTTGGGGATGTTCGAAGAGGATGGAGCCCCGGAAGAAATGAACCTGCTCTTCAGGGAAGTTATCAAAGATGGCATGACGTTGATTGCCGTTGACAAGAGGACCGATGAAGTGGCAGCAGTGGCTTTTAACAAGCTTCGCGCGAAACCGAGGAAGGGCGAGAAGGACGAGCTGGACTCCTTCATAGAGGAGAATCTGAAACATCAGACGTGTAGAAAATTGATCAAGTTTCTCGATGACATCGACAATGTGGATATTTTTGAGAGGTACGATACGAACGGAGCGATGGAGGTGTTCTATCTTGGAACCGATCCACGGTACCAAGGTCGCGGGATCGGCCGTCGAATGATGCAGGAGTGTATCGGGTTCGGTCGAGGGCTGCTCAATGGCACGAGGAGAAGGACATCGATCGACGGGGTTATTCTTGAGCAGAGC] consensusID : consensus_2264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [CGATGAACTGGAATACAAACTACTCACCAGAGATAAGGTAGAGGATGCTCTGGNNNACAGGCGGAGACTATGAAACAGGAAAACCTGGCAATAGGTTTGGGGATGTTCGAAGAGGATGGAGCCCCGGAAGAAATGAACCTGCTCTTCAGGGAAGTTATCAAAGATGGCATGACGTTGATTGCCGTTGACAAGAGGACCGATGAAGTGGCAGCAGTGGCTTTTAACAAGCTTCGCGTAACTTTTCACTCCATCTCCATTAGAAATTAAACCTTAATGTTTCCTTTTTCACAAGACTTACTTTTGTATCTTTGCAAGGCGAAACCGAGGAAGGGCGAGAAGGACGAGCTGGACTCCTTCATAGAGGAGAATCTGAAACATCAGACGTGTAGAAAATTGATCAAGTTTCTCGATGACATCGACAATGTGGATATTTTTGAGAGGTACGATACGAACGGAGCGATGGAGGTGTTCTATCTTGGAACCGATCCACGGTACCAAGGTCGCGGGATCGGC] [+] EMBL BI503705 [CGATGAACTGGAATACAAACTACTCACCAGAGATAAGGTAGAGGATGCTCTGGNNNACAGGCGGAGACTATGAAACAGGAAAACCTGGCAATAGGTTTGGGGATGTTCGAAGAGGATGGAGCCCCGGAAGAAATGAACCTGCTCTTCAGGGAAGTTATCAAAGATGGCATGACGTTGATTGCCGTTGACAAGAGGACCGATGAAGTGGCAGCAGTGGCTTTTAACAAGCTTCGCGTAACTTTTCACTCCATCTCCATTAGAAATTAAACCTTAATGTTTCCTTTTTCACAAGACTTACTTTTGTATCTTTGCAAGGCGAAACCGAGGAAGGGCGAGAAGGACGAGCTGGACTCCTTCATAGAGGAGAATCTGAAACATCAGACGTGTAGAAAATTGATCAAGTTTCTCGATGACATCGACAATGTGGATATTTTTGAGAGGTACGATACGAACGGAGCGATGGAGGTGTTCTATCTTGGAACCGATCCACGGTACCAAGGTCGCGGGATCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2264#0 TTCTTCTTCATCAATCTGTTGAAACAAAAAGTTATTTTCACCATGTCCCTCTGTGACTGT 60 consensus_2264#1 ------------------------------------------------------------ consensus_2264#0 GACGATGAACTGGAATACAAACTACTCACCAGAGATAAGGTAGAGGATGCTCTGGCTATA 120 consensus_2264#1 --CGATGAACTGGAATACAAACTACTCACCAGAGATAAGGTAGAGGATGCTCTGGNNN-A 57 ***************************************************** * consensus_2264#0 CAGGCGGAGACTATGAAACAGGAAAACCTGGCAATAGGTTTGGGGATGTTCGAAGAGGAT 180 consensus_2264#1 CAGGCGGAGACTATGAAACAGGAAAACCTGGCAATAGGTTTGGGGATGTTCGAAGAGGAT 117 ************************************************************ consensus_2264#0 GGAGCCCCGGAAGAAATGAACCTGCTCTTCAGGGAAGTTATCAAAGATGGCATGACGTTG 240 consensus_2264#1 GGAGCCCCGGAAGAAATGAACCTGCTCTTCAGGGAAGTTATCAAAGATGGCATGACGTTG 177 ************************************************************ consensus_2264#0 ATTGCCGTTGACAAGAGGACCGATGAAGTGGCAGCAGTGGCTTTTAACAAGCTTCGCG-- 298 consensus_2264#1 ATTGCCGTTGACAAGAGGACCGATGAAGTGGCAGCAGTGGCTTTTAACAAGCTTCGCGTA 237 ********************************************************** consensus_2264#0 ------------------------------------------------------------ consensus_2264#1 ACTTTTCACTCCATCTCCATTAGAAATTAAACCTTAATGTTTCCTTTTTCACAAGACTTA 297 consensus_2264#0 -------------------CGAAACCGAGGAAGGGCGAGAAGGACGAGCTGGACTCCTTC 339 consensus_2264#1 CTTTTGTATCTTTGCAAGGCGAAACCGAGGAAGGGCGAGAAGGACGAGCTGGACTCCTTC 357 ***************************************** consensus_2264#0 ATAGAGGAGAATCTGAAACATCAGACGTGTAGAAAATTGATCAAGTTTCTCGATGACATC 399 consensus_2264#1 ATAGAGGAGAATCTGAAACATCAGACGTGTAGAAAATTGATCAAGTTTCTCGATGACATC 417 ************************************************************ consensus_2264#0 GACAATGTGGATATTTTTGAGAGGTACGATACGAACGGAGCGATGGAGGTGTTCTATCTT 459 consensus_2264#1 GACAATGTGGATATTTTTGAGAGGTACGATACGAACGGAGCGATGGAGGTGTTCTATCTT 477 ************************************************************ consensus_2264#0 GGAACCGATCCACGGTACCAAGGTCGCGGGATCGGCCGTCGAATGATGCAGGAGTGTATC 519 consensus_2264#1 GGAACCGATCCACGGTACCAAGGTCGCGGGATCGGC------------------------ 513 ************************************ consensus_2264#0 GGGTTCGGTCGAGGGCTGCTCAATGGCACGAGGAGAAGGACATCGATCGACGGGGTTATT 579 consensus_2264#1 ------------------------------------------------------------ consensus_2264#0 CTTGAGCAGAGC 591 consensus_2264#1 ------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |