These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [CGTTGGAATTCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTAGGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACGGCGCGTGTAAAACGGGCATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTTAAATTTTAAGCGTGCAAGAATTACACATCGTGATGATTCGATCAATTGTGAAAATTTCAATATTTTGCTTCTTGTTATTCTTTATTTTTTTTTATCGTTTACTTGATTTTCTCACGGATAAAATAAGAAAGAAGAAACACTCTCGTGTTCATACGGATTACTCGATTCATTCTTCCATTATTCATTATAATAGATCAGATAAAAAAGAAGTGTTATTACATATTTAATTACATATTTTTTTACATATTTAAGTAGCTTGAATCGAAATTGTACTTTTAAATTGGAAAAAAAAAACAATAAATACGATCATTGCTGATAATTAAGGAAAATTTTTTACACGTTGAAAAGGAAATGAATAAATGAATAAAGTAGAATATAATTGCGAATTTAAAATCAATACGAATTTTATC] [+] EMBL BI503646 [CGTTGGAATTCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTAGGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACGGCGCGTGTAAAACGGGCATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTTAAATTTTAAGCGTGCAAGAATTACACATCGTGATGATTCGATCAATTGTGAAAATTTCAATATTTTGCTTCTTGTTATTCTTTATTTTTTTTTATCGTTTACTTGATTTTCTCACGGATAAAATAAGAAAGAAGAAACACTCTCGTGTTCATACGGATTACTCGATTCATTCTTCCATTATTCATTATAATAGATCAGATAAAAAAGAAGTGTTATTACATATTTAATTACATATTTTTTTACATATTTAAGTAGCTTGAATCGAAATTGTACTTTTAAATTGGAAAAAAAAAACAATAAATACGATCATTGCTGATAATTAAGGAAAATTTTTTACACGTTGAAAAGGAAATGAATAAATGAATAAAGTAGAATATAATTGCGAATTTAAAATCAATACGAATTTTATC] consensusID : consensus_2287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [AGAGATTTCTTGACAACGGCAAGAACATTATCGGGTCGGGCGCGTATTTTCCATTCGGGATCGGGCCCAGGATATGCATAGGGAACAGATTCGCGTTGATAGAGATGAAGGTCCTGGTCTGCTATATTCTTGCCGTTTGCGACATAAAGGCTGGAGCGAGGACTGGAATCCCGTTGGAATTCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTAGGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACGGCGCGTGTAAAACAGGGATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTTAAATTTTAAGAAGAATGTGGAAGAATTACACATCGTGTTGAATGATGATTCGGTTCGATCGTGAAAATTTCAATATTTTNNTTTATATTTTCTTATTACTTTTTATTTTTTACTTGATTTTCTCACG] [+] EMBL BI516203 [AGAGATTTCTTGACAACGGCAAGAACATTATCGGGTCGGGCGCGTATTTTCCATTCGGGATCGGGCCCAGGATATGCATAGGGAACAGATTCGCGTTGATAGAGATGAAGGTCCTGGTCTGCTATATTCTTGCCGTTTGCGACATAAAGGCTGGAGCGAGGACTGGAATCCCGTTGGAATTCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTAGGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACGGCGCGTGTAAAACAGGGATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTTAAATTTTAAGAAGAATGTGGAAGAATTACACATCGTGTTGAATGATGATTCGGTTCGATCGTGAAAATTTCAATATTTTNNTTTATATTTTCTTATTACTTTTTATTTTTTACTTGATTTTCTCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2287#0 ------------------------------------------------------------ consensus_2287#1 AGAGATTTCTTGACAACGGCAAGAACATTATCGGGTCGGGCGCGTATTTTCCATTCGGGA 60 consensus_2287#0 ------------------------------------------------------------ consensus_2287#1 TCGGGCCCAGGATATGCATAGGGAACAGATTCGCGTTGATAGAGATGAAGGTCCTGGTCT 120 consensus_2287#0 ---------------------------------------------------CGTTGGAAT 9 consensus_2287#1 GCTATATTCTTGCCGTTTGCGACATAAAGGCTGGAGCGAGGACTGGAATCCCGTTGGAAT 180 ********* consensus_2287#0 TCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTA 69 consensus_2287#1 TCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTA 240 ************************************************************ consensus_2287#0 GGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACG 129 consensus_2287#1 GGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACG 300 ************************************************************ consensus_2287#0 GCGCGTGTAAAACGGGCATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTT 189 consensus_2287#1 GCGCGTGTAAAACAGGGATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTT 360 ************* ** ******************************************* consensus_2287#0 AAATTTTAAG-----CGTGCAAGAATTACACATCGTG-------ATGATTCGAT-CAATT 236 consensus_2287#1 AAATTTTAAGAAGAATGTGGAAGAATTACACATCGTGTTGAATGATGATTCGGTTCGATC 420 ********** *** ***************** ******** * * ** consensus_2287#0 GTGAAAATTTCAATATTTTGCTTCTTGTTATTCTTTATTTTTTTTTATCGTTTACTTGAT 296 consensus_2287#1 GTGAAAATTTCAATATTTTNNTTTATATT--TTCTTATTACTTTTTATTTTTTACTTGAT 478 ******************* ** * ** * ***** ******* ********** consensus_2287#0 TTTCTCACGGATAAAATAAGAAAGAAGAAACACTCTCGTGTTCATACGGATTACTCGATT 356 consensus_2287#1 TTTCTCACG--------------------------------------------------- 487 ********* consensus_2287#0 CATTCTTCCATTATTCATTATAATAGATCAGATAAAAAAGAAGTGTTATTACATATTTAA 416 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 TTACATATTTTTTTACATATTTAAGTAGCTTGAATCGAAATTGTACTTTTAAATTGGAAA 476 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 AAAAAAACAATAAATACGATCATTGCTGATAATTAAGGAAAATTTTTTACACGTTGAAAA 536 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 GGAAATGAATAAATGAATAAAGTAGAATATAATTGCGAATTTAAAATCAATACGAATTTT 596 consensus_2287#1 ------------------------------------------------------------ consensus_2287#0 ATC 599 consensus_2287#1 --- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |