Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2589 cluster # 2589       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2589#0 length = 429 sequences # 1  
 consensus_2589#1 length = 425 sequences # 1  
consensusID : consensus_2589#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence 
                              [ATGTTAAGAAAACTTAGTAATCTGTTACAAATTTTTGTTCCTGGTCAAAAAGTAAGCAAGCGATATCTAAATTTTATACCTGTTGTTGTAGAACAAAGTGGAAGAGGAGAACGTGCATATGACATTTACTCGCGTCTTTTAAAAGAAAGAATTATTTGTTTAATGGGCCCGATCACAGATAATGTATCTTCAGTAGTGATAGCTCAACTTCTATTTCTTCAATCAGAAAATAGTAAAAATCCAATTCATATGTATATTAACTCACCTGGTGGAAGTGTCACAGCTGGACTTGGTATATATGATACCATGCAATATGTTCTACCTCCTGTTGCAACATGGTGTGTAGGACAAGCATGCTCAATGGCAAGTTTATTATTGGCAGCAGGAACAAAGGGTATGCGCCATTCATTGCCTAATGCAAGAATTATG]

[+] EMBL BI510781             [ATGTTAAGAAAACTTAGTAATCTGTTACAAATTTTTGTTCCTGGTCAAAAAGTAAGCAAGCGATATCTAAATTTTATACCTGTTGTTGTAGAACAAAGTGGAAGAGGAGAACGTGCATATGACATTTACTCGCGTCTTTTAAAAGAAAGAATTATTTGTTTAATGGGCCCGATCACAGATAATGTATCTTCAGTAGTGATAGCTCAACTTCTATTTCTTCAATCAGAAAATAGTAAAAATCCAATTCATATGTATATTAACTCACCTGGTGGAAGTGTCACAGCTGGACTTGGTATATATGATACCATGCAATATGTTCTACCTCCTGTTGCAACATGGTGTGTAGGACAAGCATGCTCAATGGCAAGTTTATTATTGGCAGCAGGAACAAAGGGTATGCGCCATTCATTGCCTAATGCAAGAATTATG]




>consensus_2589#0
ATGTTAAGAAAACTTAGTAATCTGTTACAAATTTTTGTTCCTGGTCAAAAAGTAAGCAAG
CGATATCTAAATTTTATACCTGTTGTTGTAGAACAAAGTGGAAGAGGAGAACGTGCATAT
GACATTTACTCGCGTCTTTTAAAAGAAAGAATTATTTGTTTAATGGGCCCGATCACAGAT
AATGTATCTTCAGTAGTGATAGCTCAACTTCTATTTCTTCAATCAGAAAATAGTAAAAAT
CCAATTCATATGTATATTAACTCACCTGGTGGAAGTGTCACAGCTGGACTTGGTATATAT
GATACCATGCAATATGTTCTACCTCCTGTTGCAACATGGTGTGTAGGACAAGCATGCTCA
ATGGCAAGTTTATTATTGGCAGCAGGAACAAAGGGTATGCGCCATTCATTGCCTAATGCA
AGAATTATG

consensusID : consensus_2589#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence 
                              [GTTCGAATAGAAAGTTGAAGATGAAAAATGGAATATATTAAAAATTTCTTTGTGTAAAAAAAAATCTAATTAAAAGAAATAAAATATAACCTACAAGAGTTTAAAAAAATTGTACGATAAATTAAATATTTAGATCAATTTTTTCAATTATCATATAATTGATGTAACTATATTAACGAAAAATCTTTTTTTTGATATTATAATAAATTTATGATAATAAATTTTTATTTAGGTTATGTTTTATTCTTTAATTTCTTAACAAAGATTTATCAAACTACTCATTAGTTTATTATGTAAAGTATTATTTGCAGCAATATATATCCAAGTTTAATGATCACAATAAGCGTAAAATTATAAAAATGTTAAGAAAACTTAGTAATCTGTTACAAATTTTTGTTCCTGNTCAAAAAGTAAGCAAGCGATAT]

[+] EMBL BI516742             [GTTCGAATAGAAAGTTGAAGATGAAAAATGGAATATATTAAAAATTTCTTTGTGTAAAAAAAAATCTAATTAAAAGAAATAAAATATAACCTACAAGAGTTTAAAAAAATTGTACGATAAATTAAATATTTAGATCAATTTTTTCAATTATCATATAATTGATGTAACTATATTAACGAAAAATCTTTTTTTTGATATTATAATAAATTTATGATAATAAATTTTTATTTAGGTTATGTTTTATTCTTTAATTTCTTAACAAAGATTTATCAAACTACTCATTAGTTTATTATGTAAAGTATTATTTGCAGCAATATATATCCAAGTTTAATGATCACAATAAGCGTAAAATTATAAAAATGTTAAGAAAACTTAGTAATCTGTTACAAATTTTTGTTCCTGNTCAAAAAGTAAGCAAGCGATAT]




>consensus_2589#1
GTTCGAATAGAAAGTTGAAGATGAAAAATGGAATATATTAAAAATTTCTTTGTGTAAAAA
AAAATCTAATTAAAAGAAATAAAATATAACCTACAAGAGTTTAAAAAAATTGTACGATAA
ATTAAATATTTAGATCAATTTTTTCAATTATCATATAATTGATGTAACTATATTAACGAA
AAATCTTTTTTTTGATATTATAATAAATTTATGATAATAAATTTTTATTTAGGTTATGTT
TTATTCTTTAATTTCTTAACAAAGATTTATCAAACTACTCATTAGTTTATTATGTAAAGT
ATTATTTGCAGCAATATATATCCAAGTTTAATGATCACAATAAGCGTAAAATTATAAAAA
TGTTAAGAAAACTTAGTAATCTGTTACAAATTTTTGTTCCTGNTCAAAAAGTAAGCAAGC
GATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2589#0      -----------ATGTTAAGAAAACTTAGT--AATCTGTTACAAATTTTTGTTCCTGGTCA 47
consensus_2589#1      GTTCGAATAGAAAGTTGAAGATGAAAAATGGAATATATTAAAAATTTCTTTGTGTAAAAA 60
                                 * *** *  *     * *  *** * *** ****** * *   *    *

consensus_2589#0      AAAAG-TAAGCAAGCGATATCTAAATTTTATACCTGTTGTTGTAGAACAAAGTGGAAGAG 106
consensus_2589#1      AAAATCTAATTAAAAGAAAT--AAAATATA-ACCTACAAGAGTTTAAAAAAATTGTACGA 117
                      ****  ***  **  ** **  *** * ** ****      **  ** *** * * *   

consensus_2589#0      GAGAACGTGCATATGACATTTACTCGCGTCTTTTAAAAGAAAGAATTATTTGTTTAATGG 166
consensus_2589#1      TAAATTA-------AATATTTAGATCAATTTTTTCAATTATCATATAATTGATGTAACTA 170
                       * *           * *****      * **** **  *    ** ***  * ***   

consensus_2589#0      GCCCGATCACAGATAATGTATCTTCAGTAGTGATAGCTCAACTTCTATTTCTTCAATCAG 226
consensus_2589#1      ---TATTAACGAAAAATCTTTTTTTTGATATTATAA-TAAATTTATGATAATA-AATTTT 225
                            * **  * *** * * **  *   * ***  * ** ** *  *  *  ***   

consensus_2589#0      AAAATAGTAAAAATCCAATTCATATGTATATTAACTCAC-CTGGTGGAAGTG-TCACAGC 284
consensus_2589#1      TATTTAGGTTATGTTTTATTCTTTAATTTCTTAACAAAGATTTATCAAACTACTCATTAG 285
                       *  ***   *  *   **** *   * * *****  *   *  *  ** *  ***    

consensus_2589#0      TGGACTTGGTATA-TATGATACCATGCAATATGT-TCTACCTCCTGTTGCAACATGGTGT 342
consensus_2589#1      TTTATTATGTAAAGTATTATTTGCAGCAATATATATCCAAGTTTAATGATCACAATAAGC 345
                      *  * *  *** * *** **     ******* * ** *  *    *    ***    * 

consensus_2589#0      GTAGGACAAGCATGCTCAATGGCAAGTTTATTATTGGCAGCAGGAACAAAGGGTATGCGC 402
consensus_2589#1      GTAAAATTATAAAAATGTTAAGAAAACTTAGTA-----ATCTGTTACAAATTTTTGTTCC 400
                      ***  *  *  *   *     * **  *** **     * * *  *****   *     *

consensus_2589#0      CATTCATTGCCTAATGCAAGAATTATG 429
consensus_2589#1      TGNTCAAAAAGTAA-GCAAGCGATAT- 425
                         ***     *** *****   ***


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)