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Apis mellifera
cluster # 2612 cluster # 2612       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2612#0 length = 539 sequences # 1  
consensus_2612#1 length = 424 sequences # 1  

consensusID : consensus_2612#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence
                              [GAATGTAGGTTTACAAACATCGTTTGAAAGAATAGTAATAATACAGTGGAGTTTGCGAGTCTAAAAGAAAATCGAGCGAGAAAAAGAGATACATTTATACGATTTTAAATATACCGCCAGGACCATTGCCTCTTCGATTTTGGAGGCGGGGCAAAATACGAATCGAAGAGGTTTCGATTCAAATGATGATATATATGAGAGATAACTTTACTATAAGAATACGTTTTAATCCGTACGTATGTCGATAATATTTCTTACAGTTCTCTGTAACATAAGTTTCCCTAGTTATAATGTTAAGAAGATGTAGATTTTTGGATTCTCATGATAAACATTCTATTTTGCGTAATGAATACGAGTAAGAAGGCACTCGGTCCCCTTTACGATGGAACTCTGTGCGTTATAATTGTTCGTGGACAAAGAATGAATATTTCGTATGTCGACGTTCGCCGAGATTTTGCCAGGAGAACAGATCGCGATGCTACCAATTCATCGCGTAAATATCCCTATATTGCAACTTATCCCATATGTCTGTCCTTCTT]

[+] EMBL BI502996             [GAATGTAGGTTTACAAACATCGTTTGAAAGAATAGTAATAATACAGTGGAGTTTGCGAGTCTAAAAGAAAATCGAGCGAGAAAAAGAGATACATTTATACGATTTTAAATATACCGCCAGGACCATTGCCTCTTCGATTTTGGAGGCGGGGCAAAATACGAATCGAAGAGGTTTCGATTCAAATGATGATATATATGAGAGATAACTTTACTATAAGAATACGTTTTAATCCGTACGTATGTCGATAATATTTCTTACAGTTCTCTGTAACATAAGTTTCCCTAGTTATAATGTTAAGAAGATGTAGATTTTTGGATTCTCATGATAAACATTCTATTTTGCGTAATGAATACGAGTAAGAAGGCACTCGGTCCCCTTTACGATGGAACTCTGTGCGTTATAATTGTTCGTGGACAAAGAATGAATATTTCGTATGTCGACGTTCGCCGAGATTTTGCCAGGAGAACAGATCGCGATGCTACCAATTCATCGCGTAAATATCCCTATATTGCAACTTATCCCATATGTCTGTCCTTCTT]


>consensus_2612#0 GAATGTAGGTTTACAAACATCGTTTGAAAGAATAGTAATAATACAGTGGAGTTTGCGAGT CTAAAAGAAAATCGAGCGAGAAAAAGAGATACATTTATACGATTTTAAATATACCGCCAG GACCATTGCCTCTTCGATTTTGGAGGCGGGGCAAAATACGAATCGAAGAGGTTTCGATTC AAATGATGATATATATGAGAGATAACTTTACTATAAGAATACGTTTTAATCCGTACGTAT GTCGATAATATTTCTTACAGTTCTCTGTAACATAAGTTTCCCTAGTTATAATGTTAAGAA GATGTAGATTTTTGGATTCTCATGATAAACATTCTATTTTGCGTAATGAATACGAGTAAG AAGGCACTCGGTCCCCTTTACGATGGAACTCTGTGCGTTATAATTGTTCGTGGACAAAGA ATGAATATTTCGTATGTCGACGTTCGCCGAGATTTTGCCAGGAGAACAGATCGCGATGCT ACCAATTCATCGCGTAAATATCCCTATATTGCAACTTATCCCATATGTCTGTCCTTCTT



consensusID : consensus_2612#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence
                              [CATTGTCACTTTTATTGAAACACTCTTTAGGGTATACAAGCTATTCTAGATAAGCATTAAGGAAAGTATAAAAAAAAAAAAAAAGAAAACATTGAACAACTGCTTACGAAATCACAAAGTGGATGTCTGTTCTTATTATCGTATCATTCGAACAGGTGCATTCGAAGGCACAACGATCCTCGACCCTTACGCATCGAGTATTTCGCCATGAAAACACGAACAATATGATGAAAATCGACGCACTATCGTATCTCAGTATCGTCGTAGCGAAACATCGTTTCACATTGGTCAAGCACAACGTGAAAACACGGACAATGACATATCCAATGCCCTATAAAAAAAAAAAAACTAACCTTAAAGAAGAAAGAATGCAAAGAAGGACAGACATATGGGATAAGTTGCAATATAGGGATATTTACGCGAT]

[+] EMBL BI515554             [CATTGTCACTTTTATTGAAACACTCTTTAGGGTATACAAGCTATTCTAGATAAGCATTAAGGAAAGTATAAAAAAAAAAAAAAAGAAAACATTGAACAACTGCTTACGAAATCACAAAGTGGATGTCTGTTCTTATTATCGTATCATTCGAACAGGTGCATTCGAAGGCACAACGATCCTCGACCCTTACGCATCGAGTATTTCGCCATGAAAACACGAACAATATGATGAAAATCGACGCACTATCGTATCTCAGTATCGTCGTAGCGAAACATCGTTTCACATTGGTCAAGCACAACGTGAAAACACGGACAATGACATATCCAATGCCCTATAAAAAAAAAAAAACTAACCTTAAAGAAGAAAGAATGCAAAGAAGGACAGACATATGGGATAAGTTGCAATATAGGGATATTTACGCGAT]


>consensus_2612#1 CATTGTCACTTTTATTGAAACACTCTTTAGGGTATACAAGCTATTCTAGATAAGCATTAA GGAAAGTATAAAAAAAAAAAAAAAGAAAACATTGAACAACTGCTTACGAAATCACAAAGT GGATGTCTGTTCTTATTATCGTATCATTCGAACAGGTGCATTCGAAGGCACAACGATCCT CGACCCTTACGCATCGAGTATTTCGCCATGAAAACACGAACAATATGATGAAAATCGACG CACTATCGTATCTCAGTATCGTCGTAGCGAAACATCGTTTCACATTGGTCAAGCACAACG TGAAAACACGGACAATGACATATCCAATGCCCTATAAAAAAAAAAAAACTAACCTTAAAG AAGAAAGAATGCAAAGAAGGACAGACATATGGGATAAGTTGCAATATAGGGATATTTACG CGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2612#0      GAATGTAGGTTTACAAACATCGTTTGAAAGAATAGTAATAATACAGTGGAGTTTGCGAGT 60
consensus_2612#1      CATTGTCACTTTTATTGAAACACTCTTTAGGGTATACAAGCTATTCTAGA---TAAGCAT 57
                       * ***   ***      * *  *    **  **   *   **   * **   *  *  *

consensus_2612#0      CTAAAAGAAAATCGAGCGAGAAAAAGAGATACATTTATACGATTTTAAATATACCGCCAG 120
consensus_2612#1      TAAGGAAAGTATAAAAAAAAAAAAAAAGAAAACATTGAACAACTGCTTACGAAATCACAA 117
                        *  * *  **  *   * ***** *** *   **  ** * *    *   *    ** 

consensus_2612#0      GACCATTGCCTCTTCG-ATTTTGGAGGCGGGGCAAAATACGAAT-CGAAGAGGTTTCGAT 178
consensus_2612#1      AGTGGATGTCTGTTCTTATTATCGTATCATTCGAACAGGTGCATTCGAAGGCACAACGAT 177
                            ** ** ***  *** * *   *     ** *   * ** *****      ****

consensus_2612#0      TCAAATGATGATATATATG-AGAGATAACTTTACTATAAGAATACGTTTTAATCCGTACG 237
consensus_2612#1      CCT-----CGACCCTTACGCATCGAGTATTTCGCCATGAAAACACGAAC-AATATG-ATG 230
                       *       **    ** * *  **  * **  * ** * ** ***    ***  * * *

consensus_2612#0      TATGTCGATAATATTTCTTACAGTTCTCTGTAACATAAGTTTCCCTAGTTATAATGTTAA 297
consensus_2612#1      AAAATCGACGCACTATCGTA----TCTCAGTATCGT---CGTAGCGAAACATCGTTTCAC 283
                       *  ****     * ** **    **** *** * *     *  * *   **  * * * 

consensus_2612#0      GAAGATGTAGATTTTTGGATTCTCATGATAAACATTCTATTTTGCGTAATGAATACGAGT 357
consensus_2612#1      ATTGGTCAAGCACAACGTGAAAACACGGACAATGACATATCCAATGC----CCTATAAAA 339
                         * *  **      *      ** *   **     ***     *       **  *  

consensus_2612#0      AAGAAGGCACTCGGTCCCCTTTACGATGGAACTCTGTGCGTTATAATTGTTCGTGGACAA 417
consensus_2612#1      AAAAAAAAACTAA----CCTTAAAGAAGAAAGAATGC-----AAAGAAGGACAGACATAT 390
                      ** **   ***      **** * ** * **   **      * *   *  *    * * 

consensus_2612#0      AGAATGAATATTTCGTATGTCGACGTTCGCCGAGATTTTGCCAGGAGAACAGATCGCGAT 477
consensus_2612#1      GGGATAAGT-TGCAATATAGGGATATTTAC-GCGAT------------------------ 424
                       * ** * * *    ***   **  **  * * ***                        

consensus_2612#0      GCTACCAATTCATCGCGTAAATATCCCTATATTGCAACTTATCCCATATGTCTGTCCTTC 537
consensus_2612#1      ------------------------------------------------------------
                                                                                  

consensus_2612#0      TT 539
consensus_2612#1      --
                        




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)