cluster # 2637

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Apis mellifera
cluster # 2637 cluster # 2637 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2637#0 length = 546 sequences # 1

consensus_2637#1 length = 420 sequences # 1

consensusID : consensus_2637#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [AAGGCAGTGTTCCTTTGTATGCTCTTCCTGCTGGTGAATCCGAAGACGATTATGCGCTTTTTATAGGCAGAGTTTTACATGAAGGCGTATATCACATAGGAAAAATACAACCAAACCATCAAGTATGTTATATACCCGTGGACGGGCATGAAGAACCTTACATTGATTATGAAACATTGGTCATTTGTGATTATTATGCCGCGGAATATATCGGTAGATAAGATGTTTTTCTTCTGAGAAAATATTTATTTTTCATGTGAGATGCAAAGTATTTTTTTATGTCATATATATGTATTTATACAATTGCAATTAATTTAACAAAGATAATGTATAAATTTAAAAGATAATTATAATAGTATTATAAAGATATTAAATAATCATACATATGTCTTGACATTTATTTTATGAAAATCTAGTTTTGTACTTCTACAAATTTGTACATTTATCATATAAATATCCATAGCAGATTTTTATTNNAAGCTTCCATTAAATTATTTTAATAAATGACTGTTTTCACAAATAACAGTATACTATTATAAAAAAAAA]

[+] EMBL BI512355             [AAGGCAGTGTTCCTTTGTATGCTCTTCCTGCTGGTGAATCCGAAGACGATTATGCGCTTTTTATAGGCAGAGTTTTACATGAAGGCGTATATCACATAGGAAAAATACAACCAAACCATCAAGTATGTTATATACCCGTGGACGGGCATGAAGAACCTTACATTGATTATGAAACATTGGTCATTTGTGATTATTATGCCGCGGAATATATCGGTAGATAAGATGTTTTTCTTCTGAGAAAATATTTATTTTTCATGTGAGATGCAAAGTATTTTTTTATGTCATATATATGTATTTATACAATTGCAATTAATTTAACAAAGATAATGTATAAATTTAAAAGATAATTATAATAGTATTATAAAGATATTAAATAATCATACATATGTCTTGACATTTATTTTATGAAAATCTAGTTTTGTACTTCTACAAATTTGTACATTTATCATATAAATATCCATAGCAGATTTTTATTNNAAGCTTCCATTAAATTATTTTAATAAATGACTGTTTTCACAAATAACAGTATACTATTATAAAAAAAAA]




>consensus_2637#0
AAGGCAGTGTTCCTTTGTATGCTCTTCCTGCTGGTGAATCCGAAGACGATTATGCGCTTT
TTATAGGCAGAGTTTTACATGAAGGCGTATATCACATAGGAAAAATACAACCAAACCATC
AAGTATGTTATATACCCGTGGACGGGCATGAAGAACCTTACATTGATTATGAAACATTGG
TCATTTGTGATTATTATGCCGCGGAATATATCGGTAGATAAGATGTTTTTCTTCTGAGAA
AATATTTATTTTTCATGTGAGATGCAAAGTATTTTTTTATGTCATATATATGTATTTATA
CAATTGCAATTAATTTAACAAAGATAATGTATAAATTTAAAAGATAATTATAATAGTATT
ATAAAGATATTAAATAATCATACATATGTCTTGACATTTATTTTATGAAAATCTAGTTTT
GTACTTCTACAAATTTGTACATTTATCATATAAATATCCATAGCAGATTTTTATTNNAAG
CTTCCATTAAATTATTTTAATAAATGACTGTTTTCACAAATAACAGTATACTATTATAAA
AAAAAA

consensusID : consensus_2637#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [ACAGTAAATGTTGGACATCTAAATGGTGAAGTTTTTTTATCATATAAAGATAGAAATCCATTTGTCATAAATTATATAGGAGTGAGCACTGCTTGGGGTGCAACTGGTGAATTTTTGATAGAAGAATCACCATGTACATCTATAGTTGTCAGGCAACAATTGATAGAAACTTCTCATTTTTGGGTAGATTATAATGAATCATCTGGTATTCCTCAAAATGCTGTAATGGCCTCAGAAGATGGTTTATACATAGGTCGTACTCATCACAGAGATTCACTCACACCTGGTGGTATTAGGAATAATGTGTGTACAATTGCATGGGGTGGAGCTTCTCATGATAAAAAAGATTTTCAAATATTATGTGGTAGAGATGTAAATTGGGTAAAATCATGGGAAGGCAGTGTTCCTTTGTATGCTCTT]

[+] EMBL BI514696             [ACAGTAAATGTTGGACATCTAAATGGTGAAGTTTTTTTATCATATAAAGATAGAAATCCATTTGTCATAAATTATATAGGAGTGAGCACTGCTTGGGGTGCAACTGGTGAATTTTTGATAGAAGAATCACCATGTACATCTATAGTTGTCAGGCAACAATTGATAGAAACTTCTCATTTTTGGGTAGATTATAATGAATCATCTGGTATTCCTCAAAATGCTGTAATGGCCTCAGAAGATGGTTTATACATAGGTCGTACTCATCACAGAGATTCACTCACACCTGGTGGTATTAGGAATAATGTGTGTACAATTGCATGGGGTGGAGCTTCTCATGATAAAAAAGATTTTCAAATATTATGTGGTAGAGATGTAAATTGGGTAAAATCATGGGAAGGCAGTGTTCCTTTGTATGCTCTT]




>consensus_2637#1
ACAGTAAATGTTGGACATCTAAATGGTGAAGTTTTTTTATCATATAAAGATAGAAATCCA
TTTGTCATAAATTATATAGGAGTGAGCACTGCTTGGGGTGCAACTGGTGAATTTTTGATA
GAAGAATCACCATGTACATCTATAGTTGTCAGGCAACAATTGATAGAAACTTCTCATTTT
TGGGTAGATTATAATGAATCATCTGGTATTCCTCAAAATGCTGTAATGGCCTCAGAAGAT
GGTTTATACATAGGTCGTACTCATCACAGAGATTCACTCACACCTGGTGGTATTAGGAAT
AATGTGTGTACAATTGCATGGGGTGGAGCTTCTCATGATAAAAAAGATTTTCAAATATTA
TGTGGTAGAGATGTAAATTGGGTAAAATCATGGGAAGGCAGTGTTCCTTTGTATGCTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2637#0      AAGGCAGTGTTCCTTTGTATGCTCTTCCTGCTGGTGAATCCGAAGACGATTATGCGCTTT 60
consensus_2637#1      -----------------------------------------ACAGTAAATGTTGGACATC 19
                                                                 **   **  **  * * 

consensus_2637#0      TTATAGGCAGAGTTTTACATGAAGGCGTATATCACATAGGAAAAATACAACCAAACCATC 120
consensus_2637#1      TAAATGGTGAAGTTTT-----------TTTATCATATA--AAGATAGAAATCCATTTGTC 66
                      * *  **   ******           * ***** ***  ** *    ** * *    **

consensus_2637#0      AAGTATGTTATATACCCGTGGACGG-GCATGAAGAAC--CT--TACATTGATTATGAAAC 175
consensus_2637#1      A--TAAATTATATAGGAGTGAGCACTGCTTGGGGTGCAACTGGTGAATTTTTGATAGAAG 124
                      *  **  *******   ***  *   ** **  *  *  **  *  ***  * **  ** 

consensus_2637#0      ATTGGTCATTTGTGATTATTAT-GCCGCGGAATATATCGGTAGATAAGATGTTTTTCTTC 234
consensus_2637#1      AATCACCATGTACATCTATAGTTGTCAGGCAACA-ATTGATAGA---AACTTCTCATTTT 180
                      * *   *** *     ***  * * *  * ** * ** * ****    *  * *   ** 

consensus_2637#0      TGAGAAAATATTTATTTTTCATGTGAGATGCAA-AGTATTTTTTTATGTCATATATATGT 293
consensus_2637#1      TGGGTAGATTATAATGAATCATCTGGTATTCCTCAAAATGCTGTAATGGCCTCAGAAGAT 240
                      ** * * **  * **   **** **  ** *   *  **  * * *** * *    *  *

consensus_2637#0      A-TTTATACAATTGCAATTAATTTAACAAAGATAATGTATAAATTTAAAAGATAATTATA 352
consensus_2637#1      GGTTTATACATAGGTCGT--ACTCATCACAGAGATTCACTCACACCTGGTGGTATTAGGA 298
                        ********   *   *  * * * ** *** * *   * *        * ** *   *

consensus_2637#0      ATAGTATTATAAAGATATTAAATAATCATACATATGTCTTGACATTTATTTTATGAAAAT 412
consensus_2637#1      ATAATGT-GTGTACA-ATTGCATGGGGTGGAGCTTCTCATGATAAAAAAGATTTTCAAAT 356
                      *** * *  *  * * ***  **           * ** *** *   *   * *  ****

consensus_2637#0      CTAGTTTTGTACTTCTACAAATTTGTACATTTATCATATAAATATCCATAGCAGATTTTT 472
consensus_2637#1      ATTATGTGGTAGAGATGTAAATTGGGTAA--AATCATGGGAA-------GGCAGTGTTCC 407
                       *  * * ***    *  ***** *   *   *****   **        ****  **  

consensus_2637#0      ATTNNAAGCTTCCATTAAATTATTTTAATAAATGACTGTTTTCACAAATAACAGTATACT 532
consensus_2637#1      TTTGTATGCTCTT----------------------------------------------- 420
                       **  * ***                                                  

consensus_2637#0      ATTATAAAAAAAAA 546
consensus_2637#1      --------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)