cluster # 269

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 269 cluster # 269 Sequences # 5 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_269#0 length = 509 sequences # 1
consensus_269#1 length = 486 sequences # 1

consensus_269#2 length = 481 sequences # 1
consensus_269#3 length = 435 sequences # 1
consensus_269#4 length = 311 sequences # 1

consensusID : consensus_269#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [CGAAAATGTCACGTTATCGTGAATGGGATCTTTCATGTAAAGTTTATGTCGGTAATTTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTTAGTAAATATGGTCCACTTAGAAATGTGTGGGTTGCTAGAAATCCACCGGGATTTGCTTTTGTAGAATTTGAAGATCCACGAGATGCAGAAGATGCAGTTAGGGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAAATGTCTTCAGGAAGAAGCAGACGTGGAGGTGGTGGACGAAGACCAGGTCCAAGATATTCCAGGTCCAGATCTCGCAGTCCTCGAAGGAGATCATTGGGTCGTTATCCAAGGTCAAGATCCCGTAGCCCGCGCAGAAGATCTTTAACCCGTAGTCGCAGCCGAGATCGTCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGATGCTAAAAGTATTCCAGACAATGGATCTACTAAATATGGCAGAAAGAAGATAAAAGAAAAAT]

[+] EMBL BI512618             [CGAAAATGTCACGTTATCGTGAATGGGATCTTTCATGTAAAGTTTATGTCGGTAATTTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTTAGTAAATATGGTCCACTTAGAAATGTGTGGGTTGCTAGAAATCCACCGGGATTTGCTTTTGTAGAATTTGAAGATCCACGAGATGCAGAAGATGCAGTTAGGGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAAATGTCTTCAGGAAGAAGCAGACGTGGAGGTGGTGGACGAAGACCAGGTCCAAGATATTCCAGGTCCAGATCTCGCAGTCCTCGAAGGAGATCATTGGGTCGTTATCCAAGGTCAAGATCCCGTAGCCCGCGCAGAAGATCTTTAACCCGTAGTCGCAGCCGAGATCGTCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGATGCTAAAAGTATTCCAGACAATGGATCTACTAAATATGGCAGAAAGAAGATAAAAGAAAAAT]




>consensus_269#0
CGAAAATGTCACGTTATCGTGAATGGGATCTTTCATGTAAAGTTTATGTCGGTAATTTAG
GAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTTAGTAAATATGGTCCACTTAGAA
ATGTGTGGGTTGCTAGAAATCCACCGGGATTTGCTTTTGTAGAATTTGAAGATCCACGAG
ATGCAGAAGATGCAGTTAGGGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAG
TAGAAATGTCTTCAGGAAGAAGCAGACGTGGAGGTGGTGGACGAAGACCAGGTCCAAGAT
ATTCCAGGTCCAGATCTCGCAGTCCTCGAAGGAGATCATTGGGTCGTTATCCAAGGTCAA
GATCCCGTAGCCCGCGCAGAAGATCTTTAACCCGTAGTCGCAGCCGAGATCGTCGTTCTC
GTTCGGATTCCCGTGACAGACGTTAGATGCTAAAAGTATTCCAGACAATGGATCTACTAA
ATATGGCAGAAAGAAGATAAAAGAAAAAT

consensusID : consensus_269#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [GATCTCTGACCCGTAGCCGCAGCCGAGACCGCCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGGTGCTAAAAGTGTTCGAGAGAATGGACCGACTAAATGTGGCGGAAAGAAGGCAAAAGAAAACTGATTTTATATGTACATAAAAAAAGATAATCGTTACTACACATACATATTCGGTCGAAATAATGATTATAGTAAAAGAAAAAGACATTTATAAGAGATACAAAAATAACATGTACACGATGTTTAATATTTAAATTGTTAATTTTGTGCACACAAAGCGTGTATAAAAATTAAACACATACACACAAAAAAGTGCTTGTGAATGACCACACATGCACAATTTCATACATACACATATACACATATAATACATATATTATGTACAGACGCATTTTACACACATACAAAATTTTTGTGATGTAAACTATCGAGTGCAGTGGATCTTTTAACAAGATGTGCTCATTGCTTTAAAGTGTACGA]

[+] EMBL BI510693             [GATCTCTGACCCGTAGCCGCAGCCGAGACCGCCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGGTGCTAAAAGTGTTCGAGAGAATGGACCGACTAAATGTGGCGGAAAGAAGGCAAAAGAAAACTGATTTTATATGTACATAAAAAAAGATAATCGTTACTACACATACATATTCGGTCGAAATAATGATTATAGTAAAAGAAAAAGACATTTATAAGAGATACAAAAATAACATGTACACGATGTTTAATATTTAAATTGTTAATTTTGTGCACACAAAGCGTGTATAAAAATTAAACACATACACACAAAAAAGTGCTTGTGAATGACCACACATGCACAATTTCATACATACACATATACACATATAATACATATATTATGTACAGACGCATTTTACACACATACAAAATTTTTGTGATGTAAACTATCGAGTGCAGTGGATCTTTTAACAAGATGTGCTCATTGCTTTAAAGTGTACGA]




>consensus_269#1
GATCTCTGACCCGTAGCCGCAGCCGAGACCGCCGTTCTCGTTCGGATTCCCGTGACAGAC
GTTAGGTGCTAAAAGTGTTCGAGAGAATGGACCGACTAAATGTGGCGGAAAGAAGGCAAA
AGAAAACTGATTTTATATGTACATAAAAAAAGATAATCGTTACTACACATACATATTCGG
TCGAAATAATGATTATAGTAAAAGAAAAAGACATTTATAAGAGATACAAAAATAACATGT
ACACGATGTTTAATATTTAAATTGTTAATTTTGTGCACACAAAGCGTGTATAAAAATTAA
ACACATACACACAAAAAAGTGCTTGTGAATGACCACACATGCACAATTTCATACATACAC
ATATACACATATAATACATATATTATGTACAGACGCATTTTACACACATACAAAATTTTT
GTGATGTAAACTATCGAGTGCAGTGGATCTTTTAACAAGATGTGCTCATTGCTTTAAAGT
GTACGA

consensusID : consensus_269#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [CGTGTAAAGTTTATGTTGGTAATCTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTCAGTAAATATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTAAGAAATCTTAGTGTTAAATATTAATATTTTACAGCAACATTTGAGCTGCTGCAGATGGCTAAGTGTCTTATCAAGTAGGTATTATAGTGCAGTTATCAAATAAGGATGTCAAGAAACGATGCACGGGTTTCGGTGAATTTTTTTATGCACAAAAGATATTTTTTAAAATTATTTTATATAAGAATGCAGATAGAATATATATAT]

[+] EMBL BI511226             [CGTGTAAAGTTTATGTTGGTAATCTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTCAGTAAATATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTAAGAAATCTTAGTGTTAAATATTAATATTTTACAGCAACATTTGAGCTGCTGCAGATGGCTAAGTGTCTTATCAAGTAGGTATTATAGTGCAGTTATCAAATAAGGATGTCAAGAAACGATGCACGGGTTTCGGTGAATTTTTTTATGCACAAAAGATATTTTTTAAAATTATTTTATATAAGAATGCAGATAGAATATATATAT]




>consensus_269#2
CGTGTAAAGTTTATGTTGGTAATCTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTG
CATTCAGTAAATATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTG
CTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAA
CACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAA
GTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTAAGAAATCTTAGTGTTAAATATTA
ATATTTTACAGCAACATTTGAGCTGCTGCAGATGGCTAAGTGTCTTATCAAGTAGGTATT
ATAGTGCAGTTATCAAATAAGGATGTCAAGAAACGATGCACGGGTTTCGGTGAATTTTTT
TATGCACAAAAGATATTTTTTAAAATTATTTTATATAAGAATGCAGATAGAATATATATA
T

consensusID : consensus_269#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [TTTTTTTTTAATAAATCAATTCATTTAAAAACACGCAAAATGTCACGTTATCGTGAATGGGATCTTTCGTGTAAAGTTTATGTTGGTAATCTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTCAGTAAATATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTCAAGGTCCCGTAGCCCGCGCAGGAGATCTCTGACCCGTAGCCGCAGCCGAGNCCGCCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGGTG]

[+] EMBL BI510982             [TTTTTTTTTAATAAATCAATTCATTTAAAAACACGCAAAATGTCACGTTATCGTGAATGGGATCTTTCGTGTAAAGTTTATGTTGGTAATCTAGGAAATAGTGCTAGTAAACATGAAATTGAAAGTGCATTCAGTAAATATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTCAAGGTCCCGTAGCCCGCGCAGGAGATCTCTGACCCGTAGCCGCAGCCGAGNCCGCCGTTCTCGTTCGGATTCCCGTGACAGACGTTAGGTG]




>consensus_269#3
TTTTTTTTTAATAAATCAATTCATTTAAAAACACGCAAAATGTCACGTTATCGTGAATGG
GATCTTTCGTGTAAAGTTTATGTTGGTAATCTAGGAAATAGTGCTAGTAAACATGAAATT
GAAAGTGCATTCAGTAAATATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAATCCACCT
GGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTA
GATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGA
CGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTCAAGGTCCCGTAGCCCG
CGCAGGAGATCTCTGACCCGTAGCCGCAGCCGAGNCCGCCGTTCTCGTTCGGATTCCCGT
GACAGACGTTAGGTG

consensusID : consensus_269#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [TAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGATTCTACCAGCGTCAGCTCCTAGCTCTGCTCGTCTCCCCGCCACTACTACTACTGCTACTACTACTACTACTACAGCCACCGTGAAAAAAAGTCTAGCAATCAAAACTGAACAAAAAAA]

[+] EMBL BI506254             [TAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGATTCTACCAGCGTCAGCTCCTAGCTCTGCTCGTCTCCCCGCCACTACTACTACTGCTACTACTACTACTACTACAGCCACCGTGAAAAAAAGTCTAGCAATCAAAACTGAACAAAAAAA]




>consensus_269#4
TAGAAATGTGTGGGTAGCTAGAAATCCACCTGGATTTGCTTTTGTGGAATTTGAAGATCC
ACGAGACGCAGAAGATGCAGTTAGAGGATTAGATGGAACACGCTGTTGTGGAACTAGAGT
AAGAGTAGAGATGTCTTCAGGAAGAAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCC
AAGATACTCCAGATTCTACCAGCGTCAGCTCCTAGCTCTGCTCGTCTCCCCGCCACTACT
ACTACTGCTACTACTACTACTACTACAGCCACCGTGAAAAAAAGTCTAGCAATCAAAACT
GAACAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_269#0      ---------------------------------CG-AAAATGTCACGTTATCGTGAATGG 26
consensus_269#3      TTTTTTTTTAATAAATCAATTCATTTAAAAACACGCAAAATGTCACGTTATCGTGAATGG 60
consensus_269#2      ------------------------------------------------------------
consensus_269#4      ------------------------------------------------------------
consensus_269#1      ----------------GATCTCTGACCCGTAGCCGCAGCCGAGACCGCCGTTCTCGTTCG 44
                                                                                 

consensus_269#0      GATCTTTCATGTAAAGTTTATGTC-----GGTAATTTAGGAAATAGTGCTAGTAAACATG 81
consensus_269#3      GATCTTTCGTGTAAAGTTTATGTT-----GGTAATCTAGGAAATAGTGCTAGTAAACATG 115
consensus_269#2      -------CGTGTAAAGTTTATGTT-----GGTAATCTAGGAAATAGTGCTAGTAAACATG 48
consensus_269#4      ------------------------------------------------------------
consensus_269#1      GATTCCCGTGACAGACGTTAGGTGCTAAAAGTGTTCGAGAGAATGGACCGACTAAATGTG 104
                                                                                 

consensus_269#0      AAATTGAAAGTGCATTTAGTAAAT-ATGGTCCACTTAGAAATGTGTGGGTTGCTAGAAAT 140
consensus_269#3      AAATTGAAAGTGCATTCAGTAAAT-ATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAAT 174
consensus_269#2      AAATTGAAAGTGCATTCAGTAAAT-ATGGTCCACTTAGAAATGTGTGGGTAGCTAGAAAT 107
consensus_269#4      -----------------------------------TAGAAATGTGTGGGTAGCTAGAAAT 25
consensus_269#1      GCGGAAAGAAGGCAAAAGAAAACTGATTTTATATGTACATAAAAAAAGATAATCGTTACT 164
                                                        ** * *      * *       * *

consensus_269#0      CCACCGGGATTTGCTTTTGTAGAATTTGAAGATCCACGAGATGCAGAAGATGCAGTTAGG 200
consensus_269#3      CCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGA 234
consensus_269#2      CCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGA 167
consensus_269#4      CCACCTGGATTTGCTTTTGTGGAATTTGAAGATCCACGAGACGCAGAAGATGCAGTTAGA 85
consensus_269#1      ACACATACATAT---TCGGTCGAAATAATGATTATAGTAAAAGAAAAAGACATTTATAAG 221
                      ***    ** *   *  ** *** *      *  *  * * * * ****      **  

consensus_269#0      GGAT-TAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAAATGTCTTCAGGAAG 259
consensus_269#3      GGAT-TAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAG 293
consensus_269#2      GGAT-TAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAG 226
consensus_269#4      GGAT-TAGATGGAACACGCTGTTGTGGAACTAGAGTAAGAGTAGAGATGTCTTCAGGAAG 144
consensus_269#1      AGATACAAAAATAACATGTACACGATGTTTAATATTTAAATTGTTAATTTTGTGCACACA 281
                      ***  * *   **** *     *  *    * * * * * *    ** *  *    *  

consensus_269#0      AAGCAGACGTGGAGGTGGTGGACGAAGACCAGGTCCAAGATATTCCAGGTCCAGATCTCG 319
consensus_269#3      AAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTC--------- 344
consensus_269#2      AAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGGTAAGA--AATC 284
consensus_269#4      AAGTAGACGTGCAAGTGGTGGACGGAGACCAGGTCCAAGATACTCCAGATTCTACCAGCG 204
consensus_269#1      AAGCGTGTATAAAAAT--TAAACACATACACACAAAAAAGTGCTTGTGAATGACCACACA 339
                     ***      *  *  *  *  **  * **       **  *  *   *            

consensus_269#0      CAGTCCTCGAAGGAGATCATTGGGTCGTTATCCAAGGTCAAGATCCCGTA-GCCCGCGCA 378
consensus_269#3      ---------------------------------------AAGGTCCCGTA-GCCCGCGCA 364
consensus_269#2      TTAGTGTTAAATATTAATATTTTACAG----CAACATTTGAGCTGCTGCA-GATGGC-TA 338
consensus_269#4      TCAGCTCCTAGCTCTGCTCGTCTCCC-----CGCCACTACTACTACTGCT-ACTACTACT 258
consensus_269#1      TGCACAATTTCATACATACACATATACACATATAATACATATATTATGTACAGACGCATT 399
                                                                *   *            

consensus_269#0      GAAGATCTTTAACCCGTAGTCGCAGCCGAGATCGTCGTTCTCGTTCGGA-TTCCCGTGAC 437
consensus_269#3      GGAGATCTCTGACCCGTAGCCGCAGCCGAGNCCGCCGTTCTCGTTCGGA-TTCCCGTGAC 423
consensus_269#2      AGTG--TCTTATCAAGTAG--GTATTATAGTGCAGTTATCAAATAAGGA-TGTCAAGAAA 393
consensus_269#4      ACTA--CTACAGCCACCGT--GAAAAAAAGTCTAGCAATCAAAACTGAA-CAAAAAAA-- 311
consensus_269#1      TTACACACATACAAAATTTTTGTGATGTAAACTATCGAGTGCAGTGGATCTTTTAACAAG 459
                                          *      *                 *             

consensus_269#0      AGACGTTAGATGCTAAAAGTATTCCAGACAATGGATCTACTAAATATGGCAGAAAGAAGA 497
consensus_269#3      AGACGTTAGGTG------------------------------------------------ 435
consensus_269#2      CGATGCACGGGTTTCGGTGAATTTTTTTATGCACAAAAGATATTTTTTAAAATTATTTTA 453
consensus_269#4      ------------------------------------------------------------
consensus_269#1      ATGTGCTCATTGCTTTAAAGTGTACGA--------------------------------- 486
                                                                                 

consensus_269#0      TAAAAGAAAAAT---------------- 509
consensus_269#3      ----------------------------
consensus_269#2      TATAAGAATGCAGATAGAATATATATAT 481
consensus_269#4      ----------------------------
consensus_269#1      ----------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)