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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 589 fasta sequence
[AAAAGGAAAACGAAGAGCGAAATGGAAAAAAGTTTTTTTATATATAAAATACAGATACAAACGGAGAAACGAAGAATCGAACGAGGTTACGTTAATCTATATAATAATGCTATTTACTTTCAATCATCAATTTGGCAATTTGCAAATGTTTTTAACGCCTACTTTCAATCATCAAATGAACGAACAAATATGAGAAAGCGCGTGAAGCGTCGTACTAGGCCTCACCACCATCGCCCGCTGTTGTCGTCGTGAC--TATATATATATATATATATATACAT--ATATATATACATATATATACACAATATATATATATATACA-ATATATATATACACATCATATATATATAGAAAAAAATATATATATATATT--TATATATATATATATATATATATACAGTGATGTGCCACTGGGACTAATTACTACATCGGAGTGACCACCCAACAACCCACCCCGTACTATTATATTATATTATAATATACATATATATATATATACATACATGTATATACATATGCATATGTACATATACACATATATATCTGTATGTATTATGTATATATGTATGTATGGATATGTATACGTATACGTAT]
[+] EMBL BI514416 [AAAAGGAAAACGAAGAGCGAAATGGAAAAAAGTTTTTTTATATATAAAATACAGATACAAACGGAGAAACGAAGAATCGAACGAGGTTACGTTAATCTATATAATAATGCTATTTACTTTCAATCATCAATTTGGCAATTTGCAAATGTTTTTAACGCCTACTTTCAATCATCAAATGAACGAACAAATATGAGAAAGCGCGTGAAGCGTCGTACTAGGCCTCACCACCATCGCCCGCTGTTGTCGTCGTGAC TATATATATATATATATATATACAT ATATATATACATATATATACACAATATATATATATATACATATATATATATACACATCATATATATATAGAAAAAAATATATATATATATTTATATATATATATATATATATATATACAGTGATGTGCCACTGGGACTAATTACTACATCGGAGTGACCACCCAACAACCCACCCCGTACTATTATATTATATTATAATATACATATATATATATATACATACATGTATATACATATGCATATGTACATATACACATATATATCTGTATGTATTATGTATATATGTATGTATGGATATGTATACGTATACGTAT]
[+] EMBL BI512947 [ AACGAAGAGCGAAATGGAAAAAAGTTTTTTTATATATAAAATACAGATACAAACGGAGAAACGAAGAATCGAACGAGGTTACGTTAATCTATATAATAATGCTATTTACTTTCAATCATCAATTTGGCAATTTGCAAATGTTTTTAACGCCTACTTTCAATCATCAAATGAACGAACAAATATGAGAAAGCGCGTGAAGCGTCGTACTAGGCCTCACCACCATCGCCCGCTGTTGTCGTCGTGAC TATATATATATATATATATATATATACATATATATACATATATATACACAATATATATATATATACATATATATATATACACATCATATATATATAGAAAAAAA ATATATATATATT TATATAT ]
[+] EMBL BI516995 [ TTTTTATATATAAAATACAGATACAAACGGAGAAACGAAGAATCGAACGAGGTTACGTTAATCTATATAATAATGCTATTTACTTTCAATCATCAATTTGGCAATTTGCAAATGTTTTTAACGCCTACTTTCAATCATCAAATGAACGAACAAATATGAGAAAGCGCGTGAAGCGTCGTACTAGGCCTCACCACCATCGCCCGCTGTTGTCGTCGTGACTATATATATATATATATATATATACAT GTATATATACATATATATACACAATATATATATATATAC ATGTATATATACACATCATATATATATAGAAAAAAATATATATATATATT TATATATATATATATATATATATACANNNATGTGCCACTGGGACTAATTACTACATCGGAGTGACCACCCAACAACCCACCCCNNNCTATTATATTATATTATAATATACATATATATATATGTACATACATGTATATACATATGCATATGTACATATACACATA ]
[+] EMBL BI512149 [ GAACGAACAAATATGAGAAAGCGCGTGAAGCGTCGTACTAGGCCTCACCACCATCGCCCGCTGTTGTCGTCGTGAC TATATATATATATATATATATACAT ATATATATACATATATATACACAATATATATGTATATAC ATATGTATGTACACATCATATATATATAGAAAAAAATATATATATATATT TATATATATATATATATATATATACAGTGATGTGCCACTGGGACTAATTACTACATCGGAGTGACCACCCAACAACCCACCCCGTACTATTATATTATATTATAATATACATATATATATGTATACATACATGTATATGCATATGCATATGTACGTATACACATGTATATCTG ]
consensusID : consensus_270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[AAAAAAGTTTTTTTATATATAAAATACAGATACAAACGGAGAAACGAAGAATCGAACGAGGTTACGTTAATCTATATAATAATGCTATTTACTTTCAATCATCAATTTGGCAATTTGCAAATGTTTTTAACGCCTACTTTCAATCATCAAATGAACGAACAAATATGAGAAAGCGCGTGAAGCGTCGTACTAGGCCTCACCACCATCGCCCGCTGTTGTCGTCGTGACTATATATATATATATATATATATATATATACATATATATACATATATATACACAATATATATATATATACATATATATATATACACATCATATATATATATATATATATACANNNATGTGCCACTGGGACTAATTACTACATCGGAGTGACCACCCAACAACCCACCCCGTACTATTATATTATATTATAATATACATATATATATATATACATACATGTATATACATATGCATATGTACATATACACATATATATCTGTATGTATTATGTGTATATGTATGTATGGATATGTATACGTATACGTATATG]
[+] EMBL BI517251 [AAAAAAGTTTTTTTATATATAAAATACAGATACAAACGGAGAAACGAAGAATCGAACGAGGTTACGTTAATCTATATAATAATGCTATTTACTTTCAATCATCAATTTGGCAATTTGCAAATGTTTTTAACGCCTACTTTCAATCATCAAATGAACGAACAAATATGAGAAAGCGCGTGAAGCGTCGTACTAGGCCTCACCACCATCGCCCGCTGTTGTCGTCGTGACTATATATATATATATATATATATATATATACATATATATACATATATATACACAATATATATATATATACATATATATATATACACATCATATATATATATATATATATACANNNATGTGCCACTGGGACTAATTACTACATCGGAGTGACCACCCAACAACCCACCCCGTACTATTATATTATATTATAATATACATATATATATATATACATACATGTATATACATATGCATATGTACATATACACATATATATCTGTATGTATTATGTGTATATGTATGTATGGATATGTATACGTATACGTATATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_270#0 AAAAGGAAAACGAAGAGCGAAATGGAAAAAAGTTTTTTTATATATAAAATACAGATACAA 60
consensus_270#1 -------------------------AAAAAAGTTTTTTTATATATAAAATACAGATACAA 35
***********************************
consensus_270#0 ACGGAGAAACGAAGAATCGAACGAGGTTACGTTAATCTATATAATAATGCTATTTACTTT 120
consensus_270#1 ACGGAGAAACGAAGAATCGAACGAGGTTACGTTAATCTATATAATAATGCTATTTACTTT 95
************************************************************
consensus_270#0 CAATCATCAATTTGGCAATTTGCAAATGTTTTTAACGCCTACTTTCAATCATCAAATGAA 180
consensus_270#1 CAATCATCAATTTGGCAATTTGCAAATGTTTTTAACGCCTACTTTCAATCATCAAATGAA 155
************************************************************
consensus_270#0 CGAACAAATATGAGAAAGCGCGTGAAGCGTCGTACTAGGCCTCACCACCATCGCCCGCTG 240
consensus_270#1 CGAACAAATATGAGAAAGCGCGTGAAGCGTCGTACTAGGCCTCACCACCATCGCCCGCTG 215
************************************************************
consensus_270#0 TTGTCGTCGTGACTATATATATATATATATATATACATATATATATACATATATATACAC 300
consensus_270#1 TTGTCGTCGTGACTATATATATATATATATATATA----TATATATACATATATATACA- 270
*********************************** ********************
consensus_270#0 AATATATATATATATACAATATATATATACACATCATATATATATAGAAAAAAATATATA 360
consensus_270#1 ------TATATATACACAATATATATATA-------TATACATATA--------TATATA 309
******** ************** **** ***** ******
consensus_270#0 TATATATTTATATATATATATATATATATATACAGTGATGTGCCACTGGGACTAATTACT 420
consensus_270#1 TACACATC---ATATATATATATATATATATACANNNATGTGCCACTGGGACTAATTACT 366
** * ** *********************** ***********************
consensus_270#0 ACATCGGAGTGACCACCCAACAACCCACCCCGTACTATTATATTATATTATAATATACAT 480
consensus_270#1 ACATCGGAGTGACCACCCAACAACCCACCCCGTACTATTATATTATATTATAATATACAT 426
************************************************************
consensus_270#0 ATATATATATATACATACATGTATATACATATGCATATGTACATATACACATATATATCT 540
consensus_270#1 ATATATATATATACATACATGTATATACATATGCATATGTACATATACACATATATATCT 486
************************************************************
consensus_270#0 GTATGTATTATGTATATATGTATGTATGGATATGTATACGTATACGTAT--- 589
consensus_270#1 GTATGTATTATGTGTATATGTATGTATGGATATGTATACGTATACGTATATG 538
************* ***********************************
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |