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Apis mellifera
cluster # 2794 cluster # 2794       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2794#0 length = 522 sequences # 1  
consensus_2794#1 length = 455 sequences # 1  

consensusID : consensus_2794#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence
                              [GGGGATAATGAGATGTTATATTTTGTATCACTGAGATTATCTAAAATTTCACATGTATTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGTTGTTATTCATCGATAATTAAATGTCTAAGATTTATCGGGATCGATGATTGAAATAATCATGGCTTCCTCCTTAGTAATTTCGCAAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGNNNGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAANNCTATCGGTGATCGATAAGGAATAATTCAAAAATAAAAAAAA]

[+] EMBL BI512197             [GGGGATAATGAGATGTTATATTTTGTATCACTGAGATTATCTAAAATTTCACATGTATTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGTTGTTATTCATCGATAATTAAATGTCTAAGATTTATCGGGATCGATGATTGAAATAATCATGGCTTCCTCCTTAGTAATTTCGCAAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGNNNGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAANNCTATCGGTGATCGATAAGGAATAATTCAAAAATAAAAAAAA]


>consensus_2794#0 GGGGATAATGAGATGTTATATTTTGTATCACTGAGATTATCTAAAATTTCACATGTATTA AATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGTTGTTATTC ATCGATAATTAAATGTCTAAGATTTATCGGGATCGATGATTGAAATAATCATGGCTTCCT CCTTAGTAATTTCGCAAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGT AACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCG AGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCA TTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGNNNGGGAACATCAACAC AACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAAN NCTATCGGTGATCGATAAGGAATAATTCAAAAATAAAAAAAA



consensusID : consensus_2794#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence
                              [TTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGACGGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAAGGCTATCGGTGATTGATAAGGAAAAATAAAAAAAAATTATATTTCAGAAAATATTCTCATCAAGACCATTCATTTTTGCGCTTCTCTCCTTTTTTGCATTGGATTTGTCAAAGATACTTGAA]

[+] EMBL BI517207             [TTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGACGGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAAGGCTATCGGTGATTGATAAGGAAAAATAAAAAAAAATTATATTTCAGAAAATATTCTCATCAAGACCATTCATTTTTGCGCTTCTCTCCTTTTTTGCATTGGATTTGTCAAAGATACTTGAA]


>consensus_2794#1 TTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGCTCTCG CATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAA TAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGC GTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTT CGCATCGTCTCCTCGCGACGGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTT GAACGTGAAGTTGAAAAAGTTTTGATTGATAAAGGCTATCGGTGATTGATAAGGAAAAAT AAAAAAAAATTATATTTCAGAAAATATTCTCATCAAGACCATTCATTTTTGCGCTTCTCT CCTTTTTTGCATTGGATTTGTCAAAGATACTTGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2794#0      GGGGATAATGAGATGTTATATTTTGTATCACTGAGATTATCTAAAATTTCACATGTATTA 60
consensus_2794#1      ------------------------------------------------------------
                                                                                  

consensus_2794#0      AATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGTTGTTATTC 120
consensus_2794#1      ------------------------------------------------------------
                                                                                  

consensus_2794#0      ATCGATAATTAAATGTCTAAGATTTATCGGGATCGATGATTGAAATAATCATGGCTTCCT 180
consensus_2794#1      ---------------------------TTAAATTCTTGATCGATTTCTTTGTTGCAAAGA 33
                                                     **   **** **  *  *  * **     

consensus_2794#0      CCTTAGTA-ATTTCGCAAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATG 239
consensus_2794#1      CTGATATACATTCAAGGAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATG 93
                      *     ** ***     *******************************************

consensus_2794#0      TAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGC 299
consensus_2794#1      TAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGC 153
                      ************************************************************

consensus_2794#0      GAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGC 359
consensus_2794#1      GAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGC 213
                      ************************************************************

consensus_2794#0      ATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGNNNGGGAACATCAACA 419
consensus_2794#1      ATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGACGGGGAACATCAACA 273
                      ********************************************   *************

consensus_2794#0      CAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAA 479
consensus_2794#1      CAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAA 333
                      ************************************************************

consensus_2794#0      NNCTATCGGTGATCGATAAGGAATAATTCAAAAATAAAAAAAA----------------- 522
consensus_2794#1      GGCTATCGGTGATTGATAAGGAAAAATAAAAAAAAATTATATTTCAGAAAATATTCTCAT 393
                        *********** ********* ***  ***** *  * *                   

consensus_2794#0      ------------------------------------------------------------
consensus_2794#1      CAAGACCATTCATTTTTGCGCTTCTCTCCTTTTTTGCATTGGATTTGTCAAAGATACTTG 453
                                                                                  

consensus_2794#0      --
consensus_2794#1      AA 455
                        




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)