These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [GGGGATAATGAGATGTTATATTTTGTATCACTGAGATTATCTAAAATTTCACATGTATTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGTTGTTATTCATCGATAATTAAATGTCTAAGATTTATCGGGATCGATGATTGAAATAATCATGGCTTCCTCCTTAGTAATTTCGCAAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGNNNGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAANNCTATCGGTGATCGATAAGGAATAATTCAAAAATAAAAAAAA] [+] EMBL BI512197 [GGGGATAATGAGATGTTATATTTTGTATCACTGAGATTATCTAAAATTTCACATGTATTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGTTGTTATTCATCGATAATTAAATGTCTAAGATTTATCGGGATCGATGATTGAAATAATCATGGCTTCCTCCTTAGTAATTTCGCAAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGNNNGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAANNCTATCGGTGATCGATAAGGAATAATTCAAAAATAAAAAAAA] consensusID : consensus_2794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [TTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGACGGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAAGGCTATCGGTGATTGATAAGGAAAAATAAAAAAAAATTATATTTCAGAAAATATTCTCATCAAGACCATTCATTTTTGCGCTTCTCTCCTTTTTTGCATTGGATTTGTCAAAGATACTTGAA] [+] EMBL BI517207 [TTAAATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATGTAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGCGAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGCATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGACGGGGAACATCAACACAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAAGGCTATCGGTGATTGATAAGGAAAAATAAAAAAAAATTATATTTCAGAAAATATTCTCATCAAGACCATTCATTTTTGCGCTTCTCTCCTTTTTTGCATTGGATTTGTCAAAGATACTTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2794#0 GGGGATAATGAGATGTTATATTTTGTATCACTGAGATTATCTAAAATTTCACATGTATTA 60 consensus_2794#1 ------------------------------------------------------------ consensus_2794#0 AATTCTTGATCGATTTCTTTGTTGCAAAGACTGATATACATTCAAGGAAGGTTGTTATTC 120 consensus_2794#1 ------------------------------------------------------------ consensus_2794#0 ATCGATAATTAAATGTCTAAGATTTATCGGGATCGATGATTGAAATAATCATGGCTTCCT 180 consensus_2794#1 ---------------------------TTAAATTCTTGATCGATTTCTTTGTTGCAAAGA 33 ** **** ** * * * ** consensus_2794#0 CCTTAGTA-ATTTCGCAAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATG 239 consensus_2794#1 CTGATATACATTCAAGGAAGGCTCTCGCATGCTGCTAAAGCTGTGCAGTTGAGGAACATG 93 * ** *** ******************************************* consensus_2794#0 TAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGC 299 consensus_2794#1 TAACGTATTAGAGATATAAGACTGGAATAGCAGCGCTGTTTTAAGGTTACGAGAGCTTGC 153 ************************************************************ consensus_2794#0 GAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGC 359 consensus_2794#1 GAGCTTCAAAGTGGGTCAAAAGCCAGCGTGCCAGTACACTCGCCAACCTACTTGGAACGC 213 ************************************************************ consensus_2794#0 ATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGNNNGGGAACATCAACA 419 consensus_2794#1 ATTCGAGCGGAGTCGCAAATATTCTTTCGCATCGTCTCCTCGCGACGGGGAACATCAACA 273 ******************************************** ************* consensus_2794#0 CAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAA 479 consensus_2794#1 CAACAACAGTTTTTAAATCTAAATCTTGAACGTGAAGTTGAAAAAGTTTTGATTGATAAA 333 ************************************************************ consensus_2794#0 NNCTATCGGTGATCGATAAGGAATAATTCAAAAATAAAAAAAA----------------- 522 consensus_2794#1 GGCTATCGGTGATTGATAAGGAAAAATAAAAAAAAATTATATTTCAGAAAATATTCTCAT 393 *********** ********* *** ***** * * * consensus_2794#0 ------------------------------------------------------------ consensus_2794#1 CAAGACCATTCATTTTTGCGCTTCTCTCCTTTTTTGCATTGGATTTGTCAAAGATACTTG 453 consensus_2794#0 -- consensus_2794#1 AA 455 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |