These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 583 fasta sequence [ATTGTGATTTCGAAGGCGTGGAAAATCAATTTCAATATAGGGGAATACGATTGCTTGGTCGATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGAATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACACTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGACTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCTCTAAATATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCAACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGC] [+] EMBL BI504301 [ATTGTGATTTCGAAGGCGTGGAAAATCAATTTCAATATAGGGGAATACGATTGCTTGGTCGATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGAATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACACTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGACTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCTCTAAATATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCAACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGC] [+] EMBL BI504058 [ATTGTGATTTCGAAGGCGTGGAAAATCAATTTCAATATAGGGGAATACGATTGCTTGGTCGATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGAATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACACTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGACTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCTCTAAATATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCAACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGC] [+] EMBL BI504574 [ATTGTGATTTC AAGGCGTGGAAANT NATTTCAATATAGGGGAATACGATTGCTTGGTCGATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGAATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACACTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGACTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCTCTAAATATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATT ] [+] EMBL BI508513 [ATTGTGATTTCGAAGGCGTGGAAAATCAATTTCAATATAGGGGAATACGATTGCTTGGTCGATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGAATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACACTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGACTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCTCTAAATATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTAT ] consensusID : consensus_319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [CAATATAGGGGAATACGATTGTTTGGTCGATATTCTGCTTAACAATAATGCGACACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTATTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCAACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGCAAGTAACACCCTGTGCTCCTTTGCGTAATCACAGGGATGAATTTCCCGTTTGAGCTCGCCGCGAGCCGCAAAATCTATATT] [+] EMBL BI508692 [CAATATAGGGGAATACGATTGTTTGGTCGATATTCTGCTTAACAATAATGCGACACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTATTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCAACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGCAAGTAACACCCTGTGCTCCTTTGCGTAATCACAGGGATGAATTTCCCGTTTGAGCTCGCCGCGAGCCGCAAAATCTATATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_319#0 ATTGTGATTTCGAAGGCGTGGAAAATCAATTTCAATATAGGGGAATACGATTGCTTGGTC 60 consensus_319#1 ------------------------------------------------------------ consensus_319#0 GATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGA 120 consensus_319#1 ------------------------------------------------------------ consensus_319#0 ATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACA 180 consensus_319#1 ------------------------------------------------------------ consensus_319#0 CTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGA 240 consensus_319#1 ------------------------------------------------------------ consensus_319#0 CTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCT 300 consensus_319#1 -------------------------------------------CAATATAGGGGAATACG 17 *** ** * consensus_319#0 CTAAAT--ATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCA 358 consensus_319#1 ATTGTTTGGTCGATATTCTGCTTAACAATAATGCGACACGATATTACATTAAGAAATTCA 77 * * * ** * **** ** * * ************************ consensus_319#0 CAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTC 418 consensus_319#1 CAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTATTC 137 ********************************************************* ** consensus_319#0 GAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCA 478 consensus_319#1 GAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCA 197 ************************************************************ consensus_319#0 TCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCA 538 consensus_319#1 TCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCA 257 ************************************************************ consensus_319#0 ACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGC--------------- 583 consensus_319#1 ACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGCAAGTAACACCCTGTG 317 ********************************************* consensus_319#0 ------------------------------------------------------------ consensus_319#1 CTCCTTTGCGTAATCACAGGGATGAATTTCCCGTTTGAGCTCGCCGCGAGCCGCAAAATC 377 consensus_319#0 ------ consensus_319#1 TATATT 383 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |