These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_32#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 875 fasta sequence [TTTTAATTATAATGAATTATAGCCAATAGTCAGATTTAAATCAAATCTGCGACATTCATTGGCATTTCTTCGATACTAGTATTATAGAATTGTTCAATATCTTTCAAGGTTCGTTTATCGTCGTCAGTTACCAAGTTAATTGCCACTCCCTTGCGACCGAAACGACCACCTCGACCGATTCTGTGAATATAATTTTCACGATTGGAAGGTAAATCATAATTGATGACAAGTGAAACCTGTTGAACATCAATACCACGTGCTCTCGTGCCGCTCGTGCCGGTTTCGCCTTCGTCGTGCCACAGTCAGCGCGGACACAGCCTGCGTTTCCTTTCACCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC-GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA-TTTGCG-CCCATGATCCGAACGAC-GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCG-CATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATCTTATGTATTAACGACGGGCTTGTGATTTTTTTGTCTTTTTAGCTTTAGATTTAGCTGAGAGTGTGAAAATAAAAAGAAATGGCAAGAAGAAAAA] [+] EMBL BI946495 [TTTTAATTATAATGAATTATAGCCAATAGTCAGATTTAAATCAAATCTGCGACATTCATTGGCATTTCTTCGATACTAGTATTATAGAATTGTTCAATATCTTTCAAGGTTCGTTTATCGTCGTCAGTTACCAAGTTAATTGCCACTCCCTTGCGACCGAAACGACCACCTCGACCGATTCTGTGAATATAATTTTCACGATTGGAAGGTAAATCATAATTGATGACAAGTGAAACCTGTTGAACATCAATACCACGTGCTCTCGTGCCGCTCGTGCCGGTTTCGCCTTCGTCGTGCCACAGTCAGCGCGGACACAGCCTGCGTTTCCTTTCACCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCACGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACCGAGTGCGCCCTCAACGTTCACAACTGCG ] [+] EMBL BI510853 [ CACCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCG CATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATCTTATGTATTAACGACGGGCTTGTGATTTTTTTGTCTTTTTAGCT ] [+] EMBL BI513875 [ CCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCG CATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATCTTATGT ] [+] EMBL BI513959 [ CCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTC ] [+] EMBL BI516684 [ CGTCTTGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCT ] [-] EMBL BI946494 [ CTTGGCCGAGACGGCGAGCACCTCTTCCTCTGACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATACGGCACGGCGTACGAACCGATTTTGCGCCCCACGATCCGAACGACGGCCACGTCCAAACCGAGAACGTTCGGAACCGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGACTTTCTTGAACGGCAACCTCGAAGGATCGCCTTACCTCGCCATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATCTTACGTATTAACGACGGGCTTGTGATTTTTTTGTCTTTTTAGCTTTAGATTTAGCTGAGAGTGTGAAAATAAAAAGAAATGGCAAGAAGAAAAA] [+] EMBL BI511849 [ TGGCCGAGACGGCGAGCACCTCTTCCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGANNNGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTNNAAGGATCGCGTCACCTCG CATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATC ] [+] EMBL BI512190 [ CCTC GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCG CATCATTCTTCACGATCGAG ] [+] EMBL BI511804 [ C GACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGA TTTGCG CCCATGATCCGAACGAC GCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGAGGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCG CATCATTCTTCACGATCGAGGGAAAAACAATGCTTGAGCAATTATCTTATGTATTAACGACGGGCTTGTGATTTTTTTGTCTTTTTAGCTTTAGATTTAGCTGAGAGTGTGAAAATA ] consensusID : consensus_32#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [GTCCGAAATAATTCATCGGGTAATTCTCTCAGTCGATTCTCTTCCAAACCAAGATACTTGAGACTCGTCAAGTCTTTAAATAGGTCGACAGGAGAGGTCGAGCAATACTAGCAACGTTGTGCTCAAGAAGAGGCTCTCTGGTAGATTTCGCAACTTATTCGAAGACGCATCTCTGCATCGCATCAAGGAGAAGATACATTTAATATTAGAAAAAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGATTTGCGCCCATGATCCGAACGACGCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACG] [+] EMBL BI514210 [GTCCGAAATAATTCATCGGGTAATTCTCTCAGTCGATTCTCTTCCAAACCAAGATACTTGAGACTCGTCAAGTCTTTAAATAGGTCGACAGGAGAGGTCGAGCAATACTAGCAACGTTGTGCTCAAGAAGAGGCTCTCTGGTAGATTTCGCAACTTATTCGAAGACGCATCTCTGCATCGCATCAAGGAGAAGATACATTTAATATTAGAAAAAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGAAGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGATTTGCGCCCATGATCCGAACGACGCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCGAGATGGGGACG] consensusID : consensus_32#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [GTTCAATATCTTTCAAGGTTCGTTTATCGTCGTCAGTTACCAAGTTAATTGCCACTCCCTTGCGACCGAAACGACCACCTCGACCGATTCTGTGAATATAATTTTCACGATTGGAAGGTAAATCATAATTGATGACAAGTGAAACCTGTTGAACATCAATACCACGTGCTAAAAGATCGGTTGTTATGAGAACACGAGATGATCCAGTTCTAAACTGCCTCATAATGAGATCTCGTTCTTTCTGTTCCATATCTCCATGCATAGCAGAGACCGTAAAATCACGAGTGCGCATACTTTCTGTTAACCAATCTACTTTACGCCGCGTGTTACAAAAGATAACTGCTTGAGTGATACTCAATGTATCATATAGGTCACAAAGTGTTTCAAATTTCCATTCTTCACGCTCAACATAGAAAAAAAAA] [+] EMBL BI505186 [GTTCAATATCTTTCAAGGTTCGTTTATCGTCGTCAGTTACCAAGTTAATTGCCACTCCCTTGCGACCGAAACGACCACCTCGACCGATTCTGTGAATATAATTTTCACGATTGGAAGGTAAATCATAATTGATGACAAGTGAAACCTGTTGAACATCAATACCACGTGCTAAAAGATCGGTTGTTATGAGAACACGAGATGATCCAGTTCTAAACTGCCTCATAATGAGATCTCGTTCTTTCTGTTCCATATCTCCATGCATAGCAGAGACCGTAAAATCACGAGTGCGCATACTTTCTGTTAACCAATCTACTTTACGCCGCGTGTTACAAAAGATAACTGCTTGAGTGATACTCAATGTATCATATAGGTCACAAAGTGTTTCAAATTTCCATTCTTCACGCTCAACATAGAAAAAAAAA] consensusID : consensus_32#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [TTTTTTTTTTTTTTCGCCTCGACCGGTGAGTATAGTTTCGCCTTCGTCGTGCCACAGTCAGCGCGGACACAGCCTGCGTTTCCTTTCACCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCAAAGGACGTGA] [+] EMBL BI511691 [TTTTTTTTTTTTTTCGCCTCGACCGGTGAGTATAGTTTCGCCTTCGTCGTGCCACAGTCAGCGCGGACACAGCCTGCGTTTCCTTTCACCTGCGTGAATCATGAAGTCGATCGTTTTACTAGCGTTGGTCGTCGCGTGCGCCCTCGTCTTGGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGGAGATCAAGGAGGCCGCGACGGCTTCAAAGGACGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_32#1 ------------------------------------------------------------ consensus_32#3 ------------------------------------------------------------ consensus_32#0 TTTTAATTATAATGAATTATAGCCAATAGTCAGATTTAAATCAAATCTGCGACATTCATT 60 consensus_32#2 ------------------------------------------------------------ consensus_32#1 ------------------------------------------------------------ consensus_32#3 ------------------------------------------------------------ consensus_32#0 GGCATTTCTTCGATACTAGTATTATAGAATTGTTCAATATCTTTCAAGGTTCGTTTATCG 120 consensus_32#2 ------------------------------------------------------------ consensus_32#1 -----------------------------------------------GTCCGAAATAATT 13 consensus_32#3 ------------------------------------------------------------ consensus_32#0 TCGTCAGTTACCAAGTTAATTGCCACTCCCTTGCGACCGAAACGACCACCTCGACCGATT 180 consensus_32#2 ------------------------------------------------------------ consensus_32#1 CATCGGGTA--ATTCTCTCAGTCGAT---TCTCTTCCAA--ACCAAGATACTTGAGACTC 66 consensus_32#3 ------------------------------------------------------------ consensus_32#0 CTGTGAATATAATTTTCACGATTGGAAGGTAAATCATAA--TTGATGACAAGTGAAACCT 238 consensus_32#2 -GTTCAATA--TCTTTCAAGGTTCGTTTATCGTCGTCAGTTACCAAGTTAATTGCCACTC 57 consensus_32#1 GTCAAGTCTTTAAAT-AGGTCGACAGGAGAGGTCGA--GCAATACTAGCAACGTTGTGCT 123 consensus_32#3 TTTTTTTTTTTTTTC-GCCTCGACCGGTGAGT------ATAGTTTCGCCTTCGTCGTGCC 53 consensus_32#0 GTTGAACATCAATACCACGTGCTCTCGTGCCGCTCGTGCCGGTTTCGCCTTCGTCGTGCC 298 consensus_32#2 CCTTGCGACCGAAACGACCACCTCGACCGATTCTGT---GAATATAATTTTCACGATTGG 114 * * * * * consensus_32#1 CAAGAAGAGGCTCTCTGGTAGATTTCGCAACTTATTCGAAGACGCATCTCTGCATCGCAT 183 consensus_32#3 ACAGTCAGCGCG----GACACAGCCTGCGTTTCCTTTCA---------CCTGCGT-GAAT 99 consensus_32#0 ACAGTCAGCGCG----GACACAGCCTGCGTTTCCTTTCA---------CCTGCGT-GAAT 344 consensus_32#2 AAGGTAAATCATAATTGATGACAAGTGAAACCTGTTGAA-----CATCAATACCACGTGC 169 * * * ** * * * * consensus_32#1 CAAGGAGAAGATACATTTAATATTAGAAAAAGCGTTGGTCGTCGCGTGCGCCCTCGTCTT 243 consensus_32#3 CATGAAGTCGATCGTTTTACTA---------GCGTTGGTCGTCGCGTGCGCCCTCGTCTT 150 consensus_32#0 CATGAAGTCGATCGTTTTACTA---------GCGTTGGTCGTCGCGTGCGCCCTCGTCTT 395 consensus_32#2 TAAAAGATCGGTTGTTATGAGA-------ACACGA-GATGATCCAGTTCTAAACTGCCTC 221 * * * * * * ** * * ** ** * * ** consensus_32#1 GGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGG-AGATCA 302 consensus_32#3 GGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGG-AGATCA 209 consensus_32#0 GGCCGAGACGGCGAGCACCTCTTCCTCGACGAAACCGGTCAAAGAGCCGAAGG-AGATCA 454 consensus_32#2 A-TAATGAGATCTCGTTCTTTCTGTTCCATATCTCCATGCATAGCAGAGACCGTAAAATC 280 ** * * * * * ** * ** ** ** ** * * * consensus_32#1 AGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGA 362 consensus_32#3 AGGAGGCCGCGACGGCTTCAAAGGACGTGA------------------------------ 239 consensus_32#0 AGGAGGCCGCGACGGCTTCGAAGGACGTGAAGGCCGCCAAGGAGGCGGCGAAGAAGAAGA 514 consensus_32#2 ACGAGTGCGC-ATACTTTCTGTTAACCAATCTACTTTACGCCGCGTGTTACAAAAGATAA 339 * *** *** * *** ** consensus_32#1 AGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGATTTGCGCCCATGATCCGAACG 422 consensus_32#3 ------------------------------------------------------------ consensus_32#0 AGGACTGCGCGCGCGAATGCGGCACGGCGTACGAGCCGATTTGCGCCCATGATCCGAACG 574 consensus_32#2 CTGCTTGAGTG---ATACTCAATGTATCATATAGGTCACAAAGTGTTTCAAATTTCCATT 396 consensus_32#1 ACGCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCG 482 consensus_32#3 ------------------------------------------------------------ consensus_32#0 ACGCCACGTCCAAACCGAGAACGTTCGGAACAGAGTGCGCCCTCAACGTTCACAACTGCG 634 consensus_32#2 -CTTCACGCTCAACATAGAAAAAAAAA--------------------------------- 422 consensus_32#1 AGATGGGGACG------------------------------------------------- 493 consensus_32#3 ------------------------------------------------------------ consensus_32#0 AGATGGGGACGAAATTGGTGATGAAGAGCAAAGGCGAGTGTCCAGGATCCGGCGGCGTGA 694 consensus_32#2 ------------------------------------------------------------ consensus_32#1 ------------------------------------------------------------ consensus_32#3 ------------------------------------------------------------ consensus_32#0 GGCTCTCTTGAACGGCAACCTCGAAGGATCGCGTCACCTCGCATCATTCTTCACGATCGA 754 consensus_32#2 ------------------------------------------------------------ consensus_32#1 ------------------------------------------------------------ consensus_32#3 ------------------------------------------------------------ consensus_32#0 GGGAAAAACAATGCTTGAGCAATTATCTTATGTATTAACGACGGGCTTGTGATTTTTTTG 814 consensus_32#2 ------------------------------------------------------------ consensus_32#1 ------------------------------------------------------------ consensus_32#3 ------------------------------------------------------------ consensus_32#0 TCTTTTTAGCTTTAGATTTAGCTGAGAGTGTGAAAATAAAAAGAAATGGCAAGAAGAAAA 874 consensus_32#2 ------------------------------------------------------------ consensus_32#1 - consensus_32#3 - consensus_32#0 A 875 consensus_32#2 - |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |