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Apis mellifera
cluster # 39 cluster # 39       Sequences # 11       consensus # 8


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_39#0 length = 703 sequences # 4  
consensus_39#1 length = 652 sequences # 1  
consensus_39#2 length = 603 sequences # 1  
consensus_39#3 length = 532 sequences # 1  
consensus_39#4 length = 498 sequences # 1  
consensus_39#5 length = 436 sequences # 1  
consensus_39#6 length = 378 sequences # 1  
consensus_39#7 length = 350 sequences # 1  

consensusID : consensus_39#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 703
fasta sequence
                              [TCGTGTCGTGTCGTGAGAGCATAAGCTTTTAGTGAACAAAGCAACATTTTTTACGTATATTCAGTATGGTAGGGACAAGGGTCTATGTCGGTGGGCTTCCATACGGCACCAGGGAAAGAGACCTTGAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGTAAGTACTTGAATCAAATTTTATACACATACTTAACACTTTACTCTACTCAGTTTGGTCTTATTATTTATCAATTTTTATTAAAAAAAA-TTTTATTTGCAAGTTGAATAATCATATATTACATTTGCAAAAAAAAAAAGCATCCATCTTCATTTCCACTAACTAGGTTTATGAATTACCATCCGATATAAAGTTGTTTGTGTGATATATATATATATATAAATTATATTTAAGTTAAGTATCGATATTTTACGTTCGTTATTTTATTTTTTATTTTTATAATAACTTTAAACTACGATATTTAAATAAAATCTTGACACAATAACTTTCAAGTTTTATTATATTTTATTATTTTATTGCTGACCAAAATGTGTAGAAGGTAAAGTGTTTTACTTAAAAAATAACTTGAACTCGTGAGTTGATCTGACCTACCTTGAGCCCCCGATTCCGAGTCTCGACGTCGAAGTTGGGAGTACCATGATCGAACGTTAGAGCGCCGTGGCGTCGATCGG]

[+] EMBL BE844273             [TCGTGTCGTGTCGTGAGAGCATAAGCTTTTAGTGAACAAAGCAACATTTTTTACGTATATTCAGTATGGTAGGGACAAGGGTCTATGTCGGTGGGCTTCCATACGGCACCAGGGAAAGAGACCTTGAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGTAAGTACTTGAATCAAATTTTATACACATACTTAACACTTTACTCTACTCAGTTTGGTCTTATTATTTATCAATTTTTATTAAAAAAAATTTTTATTTGCAAGTTGAATAATCATATATTACATTTAGCGCTTAAAAATGCATCCATCTTCATTTCCACTAACTAGGTTTATGAATTACCATCCGATATAAAGTTGTTTGTGTGATATATATATATATATAAATTATATTTAAGTTAAGTATCGATATTTTACGTTCGTTATTTTATTTTTTATTTTTATAATAACTTTAAACTACGATATTTAAATAAAATCTTGACACAATAACTTTCAAGTTTTATTATATTTTATTATTTTATTGCTGACCAAAATGTGTAGAAGGTAAAGTGTTTTACTTAAAAAATAACTTGAACTCGTGAGTTGATCTGACCTACCTTGAGCCCCCGATTCCGAGTCTCGACGTCGAAGTTGGGAGTACCATGATCGAACGTTAGAGCGCCGTGGCGTCGATCGG]
[+] EMBL BI507669             [                                                             CAGTATGGTAGGGACAAGGGTCTATGTCGGTGGGCTTCCATACGGCACCAGGGAAAGAGACCTTGAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGTAAGTACTTAAATCAAATTTTATACACATACTTAACACTTTACTCTACTCAGTTTGGTCTTATTATTTATCAATTTTTATT  AAAAAA TTTTATTTGCAAGTTGAATAATCATATATTACATTTGCAAAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI508460             [                                                             CAGTATGGTAGGGACAAGGGTCTATGTCGGTGGGCTTCCATACGGCACCAGGGAAAGAGACCTTGAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGTAAGTACTTAAATCAAATTTTATACACATACTTAACACTTTACTCTACTCAGTTTGGTCTTATTATTTATCAATTTTTATT  AAAAAA TTTTATTTGCAAGTTGAATAATCATATATTACATTTGCAAAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI508252             [                                                                                                                             GAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGTAAGTACTTGAATCAAATTTTATACACATACTTAACACTTTACTCTACTCAGTTTGGTCTTATTATTTATCAATTTTTATTAAAAAAAATTTTTATTTGCAAGTTGAATAATCATATATTACATTTGCAAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_39#0 TCGTGTCGTGTCGTGAGAGCATAAGCTTTTAGTGAACAAAGCAACATTTTTTACGTATAT TCAGTATGGTAGGGACAAGGGTCTATGTCGGTGGGCTTCCATACGGCACCAGGGAAAGAG ACCTTGAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTT ACGGTTTTGTTGTAAGTACTTGAATCAAATTTTATACACATACTTAACACTTTACTCTAC TCAGTTTGGTCTTATTATTTATCAATTTTTATTAAAAAAAATTTTATTTGCAAGTTGAAT AATCATATATTACATTTGCAAAAAAAAAAAGCATCCATCTTCATTTCCACTAACTAGGTT TATGAATTACCATCCGATATAAAGTTGTTTGTGTGATATATATATATATATAAATTATAT TTAAGTTAAGTATCGATATTTTACGTTCGTTATTTTATTTTTTATTTTTATAATAACTTT AAACTACGATATTTAAATAAAATCTTGACACAATAACTTTCAAGTTTTATTATATTTTAT TATTTTATTGCTGACCAAAATGTGTAGAAGGTAAAGTGTTTTACTTAAAAAATAACTTGA ACTCGTGAGTTGATCTGACCTACCTTGAGCCCCCGATTCCGAGTCTCGACGTCGAAGTTG GGAGTACCATGATCGAACGTTAGAGCGCCGTGGCGTCGATCGG



consensusID : consensus_39#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 652
fasta sequence
                              [CTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGGATGCAGATGATGCAGTCTACGAGCTCAATGGGAAGGAGCTTCTAGGAGAAAGAATTACTGTAGAGAGGGCCCGGGGGACACCTAGGGGTAGTGACCAGTGGCGCTATGGTGACTCCCGTGGTGGTTATGGGGACTCGAGGCGATCTGCCCGAGACGATATGCGGCACGACAGAGATAGTGTGAACAGAAACACGAGGACTGCATCTAGCTACAAGCAATCATTGCCCAGATATGGACCACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGAGCCATGTCCTCTTCACCGAGGAGGGGTGACCGGTAGGGCCAATAGACTGATGATGTGCGATGATAAAGATGACGATGCACGCGATGGGCCCGCCTTAAGGTCAAGTGGCACCAGTGATACGTGGTGAAACCCAGTGACGAGATAGGTTCTTACGTATCTGCGATCTTCTCATCGTGATCGCTGGGAGAGAAAAACGTCGTCTGNNTTCTACGATCATCAATGACTCTGACCTGTATCTTTGCCTGGATGTGTACAACAGCAATCACCACTATTTTACTCTCTCTCTCAATATCTTTCCATA]

[+] EMBL BI508271             [CTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGGATGCAGATGATGCAGTCTACGAGCTCAATGGGAAGGAGCTTCTAGGAGAAAGAATTACTGTAGAGAGGGCCCGGGGGACACCTAGGGGTAGTGACCAGTGGCGCTATGGTGACTCCCGTGGTGGTTATGGGGACTCGAGGCGATCTGCCCGAGACGATATGCGGCACGACAGAGATAGTGTGAACAGAAACACGAGGACTGCATCTAGCTACAAGCAATCATTGCCCAGATATGGACCACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGAGCCATGTCCTCTTCACCGAGGAGGGGTGACCGGTAGGGCCAATAGACTGATGATGTGCGATGATAAAGATGACGATGCACGCGATGGGCCCGCCTTAAGGTCAAGTGGCACCAGTGATACGTGGTGAAACCCAGTGACGAGATAGGTTCTTACGTATCTGCGATCTTCTCATCGTGATCGCTGGGAGAGAAAAACGTCGTCTGNNTTCTACGATCATCAATGACTCTGACCTGTATCTTTGCCTGGATGTGTACAACAGCAATCACCACTATTTTACTCTCTCTCTCAATATCTTTCCATA]


>consensus_39#1 CTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGGATGCAGATG ATGCAGTCTACGAGCTCAATGGGAAGGAGCTTCTAGGAGAAAGAATTACTGTAGAGAGGG CCCGGGGGACACCTAGGGGTAGTGACCAGTGGCGCTATGGTGACTCCCGTGGTGGTTATG GGGACTCGAGGCGATCTGCCCGAGACGATATGCGGCACGACAGAGATAGTGTGAACAGAA ACACGAGGACTGCATCTAGCTACAAGCAATCATTGCCCAGATATGGACCACCAACACGCA CCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGAGCCATGTCC TCTTCACCGAGGAGGGGTGACCGGTAGGGCCAATAGACTGATGATGTGCGATGATAAAGA TGACGATGCACGCGATGGGCCCGCCTTAAGGTCAAGTGGCACCAGTGATACGTGGTGAAA CCCAGTGACGAGATAGGTTCTTACGTATCTGCGATCTTCTCATCGTGATCGCTGGGAGAG AAAAACGTCGTCTGNNTTCTACGATCATCAATGACTCTGACCTGTATCTTTGCCTGGATG TGTACAACAGCAATCACCACTATTTTACTCTCTCTCTCAATATCTTTCCATA



consensusID : consensus_39#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence
                              [GGCGCTATGGTGACTCCCGTGGTGGTTATGGGGACTCGAGGCGATCTGCAGATAGTGTGAACAGAAACACGAGGACTGCATCTAGCTACAAGCAATCATTGCCCAGATATGGACCACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGATTTGAAGGATTATATGAGACAGGCTGGTGAAGTGACATATGCAGATGCACATAAGCAACGCAGGAACGAAGGAGTTGTAGAATTTGCAACATATTCTGATTTGAAGAACGCCATCGATAAATTGGATGACACAGAACTAAATGGACGTAGAATCAGACTTATCGAGGATAAGAGACGGGGACGTCGTTCAAGGTCCTCAAGTTCGAGATCAAGATCACGGTCACGATCTCGATCTCGTCGCCGTTCCCGCTCCCGCTCAAGGAGTCGCCGTAGTTCTCGCAGCCGTAGTCGTCGCAGTAGCCGTTCCAAATCAAGAGCACATACTAAATCAAAATCGAAATCCAAATCCAAATCACCTGAACGTAGCCGAACTCGATCTAAATCCAAATCAAGAGACCGCTCAAAGTCGAAATCTAAGTCAAAGT]

[+] EMBL BI516156             [GGCGCTATGGTGACTCCCGTGGTGGTTATGGGGACTCGAGGCGATCTGCAGATAGTGTGAACAGAAACACGAGGACTGCATCTAGCTACAAGCAATCATTGCCCAGATATGGACCACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGATTTGAAGGATTATATGAGACAGGCTGGTGAAGTGACATATGCAGATGCACATAAGCAACGCAGGAACGAAGGAGTTGTAGAATTTGCAACATATTCTGATTTGAAGAACGCCATCGATAAATTGGATGACACAGAACTAAATGGACGTAGAATCAGACTTATCGAGGATAAGAGACGGGGACGTCGTTCAAGGTCCTCAAGTTCGAGATCAAGATCACGGTCACGATCTCGATCTCGTCGCCGTTCCCGCTCCCGCTCAAGGAGTCGCCGTAGTTCTCGCAGCCGTAGTCGTCGCAGTAGCCGTTCCAAATCAAGAGCACATACTAAATCAAAATCGAAATCCAAATCCAAATCACCTGAACGTAGCCGAACTCGATCTAAATCCAAATCAAGAGACCGCTCAAAGTCGAAATCTAAGTCAAAGT]


>consensus_39#2 GGCGCTATGGTGACTCCCGTGGTGGTTATGGGGACTCGAGGCGATCTGCAGATAGTGTGA ACAGAAACACGAGGACTGCATCTAGCTACAAGCAATCATTGCCCAGATATGGACCACCAA CACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGATT TGAAGGATTATATGAGACAGGCTGGTGAAGTGACATATGCAGATGCACATAAGCAACGCA GGAACGAAGGAGTTGTAGAATTTGCAACATATTCTGATTTGAAGAACGCCATCGATAAAT TGGATGACACAGAACTAAATGGACGTAGAATCAGACTTATCGAGGATAAGAGACGGGGAC GTCGTTCAAGGTCCTCAAGTTCGAGATCAAGATCACGGTCACGATCTCGATCTCGTCGCC GTTCCCGCTCCCGCTCAAGGAGTCGCCGTAGTTCTCGCAGCCGTAGTCGTCGCAGTAGCC GTTCCAAATCAAGAGCACATACTAAATCAAAATCGAAATCCAAATCCAAATCACCTGAAC GTAGCCGAACTCGATCTAAATCCAAATCAAGAGACCGCTCAAAGTCGAAATCTAAGTCAA AGT



consensusID : consensus_39#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence
                              [GAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGAATTTGACGACTATAGGGATGCAGATGATGCAGTCTACGAGCTCAATGGGAAGGAGCTTCTAGGAGAAAGAATTACTGTAGAGAGGGCCCGGGGGACACCTAGGGGTAGTGACCAGTGGCGCTATGGTGACTCCCGTGGTGGTTATGGGGACTCGAGGCGATCTGCATATGGACCACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGATTTGAAGGATTATATGAGACAGGCTGGTGAAGTGACATATGCAGATGCACATAAGCAACGCAGGAACGAAGGAGTTGTAGAATTTGCAACATATTCTGATTTGAAGAACGCCATCGATAAATTGGATGACACAGAACTAAATGGACGTAGAATCAGACTTATCGAGGATAAGAGACGGGGACGTCGTTCAAGGTCCTCAAGTTCGAGATCAAGATCACGGTCACGAT]

[+] EMBL BI512383             [GAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGAATTTGACGACTATAGGGATGCAGATGATGCAGTCTACGAGCTCAATGGGAAGGAGCTTCTAGGAGAAAGAATTACTGTAGAGAGGGCCCGGGGGACACCTAGGGGTAGTGACCAGTGGCGCTATGGTGACTCCCGTGGTGGTTATGGGGACTCGAGGCGATCTGCATATGGACCACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGATTTGAAGGATTATATGAGACAGGCTGGTGAAGTGACATATGCAGATGCACATAAGCAACGCAGGAACGAAGGAGTTGTAGAATTTGCAACATATTCTGATTTGAAGAACGCCATCGATAAATTGGATGACACAGAACTAAATGGACGTAGAATCAGACTTATCGAGGATAAGAGACGGGGACGTCGTTCAAGGTCCTCAAGTTCGAGATCAAGATCACGGTCACGAT]


>consensus_39#3 GAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGT TTTGTTGAATTTGACGACTATAGGGATGCAGATGATGCAGTCTACGAGCTCAATGGGAAG GAGCTTCTAGGAGAAAGAATTACTGTAGAGAGGGCCCGGGGGACACCTAGGGGTAGTGAC CAGTGGCGCTATGGTGACTCCCGTGGTGGTTATGGGGACTCGAGGCGATCTGCATATGGA CCACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGG CAGGATTTGAAGGATTATATGAGACAGGCTGGTGAAGTGACATATGCAGATGCACATAAG CAACGCAGGAACGAAGGAGTTGTAGAATTTGCAACATATTCTGATTTGAAGAACGCCATC GATAAATTGGATGACACAGAACTAAATGGACGTAGAATCAGACTTATCGAGGATAAGAGA CGGGGACGTCGTTCAAGGTCCTCAAGTTCGAGATCAAGATCACGGTCACGAT



consensusID : consensus_39#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence
                              [TGTCGTGAGAGCATAAGCTTTTAGTGAACAAAGCAACATTTTTTACGTATATTCAGAATGAGCACCCGAGTATTCGTTGGTGGATTAACATACCGGGTGAGAGAGCGCGACCTTGAGAAGTTCTTCCGGAAATATGGTAGAATCAAGGAGGTCGCTATGAAGAATGGATTTGCCTTTGTGGTAAGTCTAATGTGGTTCAATTGTTTTTTTTACAGTATGGTAGGGACAAGGGTCTATGTCGGTGGGCTTCCATACGGCACCAGGGAAAGAGACCTTGAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGTAAGTACTTGAATCAAATTTTATACACATACTTAACACTTTACTCTACTCAGTTTGGTCTTATTATTTATCAATTTTTATTAAAAAAAATTTTTATTTGCAAGTTGAATAATCATATATTACATTTAGCGCTTAAAAATGCATCCATCTTCATTT]

[+] EMBL BE844652             [TGTCGTGAGAGCATAAGCTTTTAGTGAACAAAGCAACATTTTTTACGTATATTCAGAATGAGCACCCGAGTATTCGTTGGTGGATTAACATACCGGGTGAGAGAGCGCGACCTTGAGAAGTTCTTCCGGAAATATGGTAGAATCAAGGAGGTCGCTATGAAGAATGGATTTGCCTTTGTGGTAAGTCTAATGTGGTTCAATTGTTTTTTTTACAGTATGGTAGGGACAAGGGTCTATGTCGGTGGGCTTCCATACGGCACCAGGGAAAGAGACCTTGAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGTAAGTACTTGAATCAAATTTTATACACATACTTAACACTTTACTCTACTCAGTTTGGTCTTATTATTTATCAATTTTTATTAAAAAAAATTTTTATTTGCAAGTTGAATAATCATATATTACATTTAGCGCTTAAAAATGCATCCATCTTCATTT]


>consensus_39#4 TGTCGTGAGAGCATAAGCTTTTAGTGAACAAAGCAACATTTTTTACGTATATTCAGAATG AGCACCCGAGTATTCGTTGGTGGATTAACATACCGGGTGAGAGAGCGCGACCTTGAGAAG TTCTTCCGGAAATATGGTAGAATCAAGGAGGTCGCTATGAAGAATGGATTTGCCTTTGTG GTAAGTCTAATGTGGTTCAATTGTTTTTTTTACAGTATGGTAGGGACAAGGGTCTATGTC GGTGGGCTTCCATACGGCACCAGGGAAAGAGACCTTGAGAGATTTTTCAGAGGCTACGGT CGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGTAAGTACTTGAATCAAA TTTTATACACATACTTAACACTTTACTCTACTCAGTTTGGTCTTATTATTTATCAATTTT TATTAAAAAAAATTTTTATTTGCAAGTTGAATAATCATATATTACATTTAGCGCTTAAAA ATGCATCCATCTTCATTT



consensusID : consensus_39#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence
                              [CCATACGGCACCAGGGAAAGAGACCTTGAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGAATTTGACGACTATAGGGATGCAGATGATGCAGTCTACGAGCTCAATGGGAAGGAGCTTCTAGGAGAAAGAGTGGCGGTGGAGATAGCACGGGGTGTTTCAGGGAGGCGAGGCGACCGTGGCTACGGACGCTCACGCTCCTGGAGAGACAACCGAGACGATATGCGGCACGACAGAGATAGTGTGAACAGAAACACGAGGACTGCATCTAGCTACAAGCAATCATTGCCCAGATATGGACCACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGATTTGAAGGATTATATGAGACAGGCTGGTGAAGTGACAT]

[+] EMBL BI511023             [CCATACGGCACCAGGGAAAGAGACCTTGAGAGATTTTTCAGAGGCTACGGTCGATTCCGTGATGTCCTCATCAAGAACGGTTACGGTTTTGTTGAATTTGACGACTATAGGGATGCAGATGATGCAGTCTACGAGCTCAATGGGAAGGAGCTTCTAGGAGAAAGAGTGGCGGTGGAGATAGCACGGGGTGTTTCAGGGAGGCGAGGCGACCGTGGCTACGGACGCTCACGCTCCTGGAGAGACAACCGAGACGATATGCGGCACGACAGAGATAGTGTGAACAGAAACACGAGGACTGCATCTAGCTACAAGCAATCATTGCCCAGATATGGACCACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGATTTGAAGGATTATATGAGACAGGCTGGTGAAGTGACAT]


>consensus_39#5 CCATACGGCACCAGGGAAAGAGACCTTGAGAGATTTTTCAGAGGCTACGGTCGATTCCGT GATGTCCTCATCAAGAACGGTTACGGTTTTGTTGAATTTGACGACTATAGGGATGCAGAT GATGCAGTCTACGAGCTCAATGGGAAGGAGCTTCTAGGAGAAAGAGTGGCGGTGGAGATA GCACGGGGTGTTTCAGGGAGGCGAGGCGACCGTGGCTACGGACGCTCACGCTCCTGGAGA GACAACCGAGACGATATGCGGCACGACAGAGATAGTGTGAACAGAAACACGAGGACTGCA TCTAGCTACAAGCAATCATTGCCCAGATATGGACCACCAACACGCACCGAATACCGGCTC ACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGATTTGAAGGATTATATGAGACAG GCTGGTGAAGTGACAT



consensusID : consensus_39#6
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence
                              [GATGACGATGCACGCGATGGGCCCGCCTTAAGGTCAAGTGGCACCAGGTTGGTTTCTGAGGTGTCCCGGGTGAGAGAGATAACCGCGTGGCACTGGGTACACCTACCACCTACCACCTTCTACTACTTGCGCAGTGATACGTGGTGAAACCCAGTGACGAGATAGGTTCTTACGTATCTGCGATCTTCTCATCGTGATCGCTGGGAGAGAAAAACGTCGTCTGCCTTCTACGATCATCAATGACTCTGACCTGTATCTTTGCCTGGATGTGTACAACAGCAATCACCACTATTTTACTCTCTCTCTCAATATCTTTCCATATCATTATCACTATCATTGTTACCAAACATTTTTTCTATTATATCCTTTATAAAAAAA]

[+] EMBL BI503170             [GATGACGATGCACGCGATGGGCCCGCCTTAAGGTCAAGTGGCACCAGGTTGGTTTCTGAGGTGTCCCGGGTGAGAGAGATAACCGCGTGGCACTGGGTACACCTACCACCTACCACCTTCTACTACTTGCGCAGTGATACGTGGTGAAACCCAGTGACGAGATAGGTTCTTACGTATCTGCGATCTTCTCATCGTGATCGCTGGGAGAGAAAAACGTCGTCTGCCTTCTACGATCATCAATGACTCTGACCTGTATCTTTGCCTGGATGTGTACAACAGCAATCACCACTATTTTACTCTCTCTCTCAATATCTTTCCATATCATTATCACTATCATTGTTACCAAACATTTTTTCTATTATATCCTTTATAAAAAAA]


>consensus_39#6 GATGACGATGCACGCGATGGGCCCGCCTTAAGGTCAAGTGGCACCAGGTTGGTTTCTGAG GTGTCCCGGGTGAGAGAGATAACCGCGTGGCACTGGGTACACCTACCACCTACCACCTTC TACTACTTGCGCAGTGATACGTGGTGAAACCCAGTGACGAGATAGGTTCTTACGTATCTG CGATCTTCTCATCGTGATCGCTGGGAGAGAAAAACGTCGTCTGCCTTCTACGATCATCAA TGACTCTGACCTGTATCTTTGCCTGGATGTGTACAACAGCAATCACCACTATTTTACTCT CTCTCTCAATATCTTTCCATATCATTATCACTATCATTGTTACCAAACATTTTTTCTATT ATATCCTTTATAAAAAAA



consensusID : consensus_39#7
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence
                              [CACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGTAAGCAATATCTGTACCCTTGCTTCACATTTTTACTATACATCCGATAGCTTTTTCGTGAGTTTGATTGCTACTCGAGGTTTCCAGAATGATGACGATATGCGAATATTCCATCCAAAATGCGCGCGGGGACCCAATATATATATATTCTTGCTGGCGTTTAATCGTTCCGGATTTCATATATTCCCCGAGTTGAACCAAACTTACACGCGGTGGCATTTTTAGCACTAATATTTTTATTCGATTTTTCTTTCGCCATTTTTAAGTTCGTTTACGGATATCTGAAAC]

[+] EMBL BI507418             [CACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGTAAGCAATATCTGTACCCTTGCTTCACATTTTTACTATACATCCGATAGCTTTTTCGTGAGTTTGATTGCTACTCGAGGTTTCCAGAATGATGACGATATGCGAATATTCCATCCAAAATGCGCGCGGGGACCCAATATATATATATTCTTGCTGGCGTTTAATCGTTCCGGATTTCATATATTCCCCGAGTTGAACCAAACTTACACGCGGTGGCATTTTTAGCACTAATATTTTTATTCGATTTTTCTTTCGCCATTTTTAAGTTCGTTTACGGATATCTGAAAC]


>consensus_39#7 CACCAACACGCACCGAATACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGC AGGTAAGCAATATCTGTACCCTTGCTTCACATTTTTACTATACATCCGATAGCTTTTTCG TGAGTTTGATTGCTACTCGAGGTTTCCAGAATGATGACGATATGCGAATATTCCATCCAA AATGCGCGCGGGGACCCAATATATATATATTCTTGCTGGCGTTTAATCGTTCCGGATTTC ATATATTCCCCGAGTTGAACCAAACTTACACGCGGTGGCATTTTTAGCACTAATATTTTT ATTCGATTTTTCTTTCGCCATTTTTAAGTTCGTTTACGGATATCTGAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_39#1      --------------------------------------------CTACGGTCGATTCCGT 16
consensus_39#6      ------------------------------------------------------------
consensus_39#2      ------------------------------------------------------------
consensus_39#3      ---------------------------GAGAGATTTTTCAGAGGCTACGGTCGATTCCGT 33
consensus_39#5      CCATACGGCACCAGGGAAAGAGACCTTGAGAGATTTTTCAGAGGCTACGGTCGATTCCGT 60
consensus_39#0      ------------------------------------------------------------
consensus_39#4      ------------------------------------------------------------
consensus_39#7      ------------------------------------------------------------
                                                                                

consensus_39#1      GATGTCCTCATCAAGAACGGTTACGGTTTTGTTGGATGCAGATGATGCAGTCTACGAGCT 76
consensus_39#6      ------------------------------------------------------------
consensus_39#2      ------------------------------------------------------------
consensus_39#3      GATGTCCTCATCAAGAACGGTTACGGTTTTGTTGAATTTGACGACTATAGGGATGCAGAT 93
consensus_39#5      GATGTCCTCATCAAGAACGGTTACGGTTTTGTTGAATTTGACGACTATAGGGATGCAGAT 120
consensus_39#0      ------------------------------------------------------------
consensus_39#4      ------------------------------------------------------------
consensus_39#7      ------------------------------------------------------------
                                                                                

consensus_39#1      CAATGGGAAGGAGCTTCTAGGAGAAAGAATTACTGTAGAGAGGGCCCGGGGGACACCTAG 136
consensus_39#6      ------------------------------------------------------------
consensus_39#2      ----------------------------GGCGCTATGGTGACTCCC--GTGGTGGTTATG 30
consensus_39#3      GATGCAGTCTACGAGCTCAATGGGAAGGAGCTTCTAGGAGAAAGAA--TTACTGTAGAGA 151
consensus_39#5      GATGCAGTCTACGAGCTCAATGGGAAGGAGCTTCTAGGAGAAAGAGTGGCGGTGGAGATA 180
consensus_39#0      ------------------------------------------------------------
consensus_39#4      -------------TGTCGTGAGAGCATAAGCTTTTAGTGAACAAAGCAACATTTTTTACG 47
consensus_39#7      ------------------------------------------------------------
                                                                                

consensus_39#1      GGGTA--GTGACCAGTGGCGCTATGGTGACTCCCGTGGTGGTTATGGGGACTCGAGGCGA 194
consensus_39#6      ------------------------------------------------------------
consensus_39#2      G---------------GGACTCGAGGCGATC----------------------------- 46
consensus_39#3      G---------------GGCCCGGGGGACACC----------------------------- 167
consensus_39#5      GCACGGGGTGTTTCAGGGAGGCGAGGCGACCGTGGCTACGGACGCTCACGCTCCTGGAGA 240
consensus_39#0      ------------------------------------------------------------
consensus_39#4      TATATTCAGAATGAGCACCCGAGTATTCGTTGGTGGATTAACATACCGGGTGAGAGAGCG 107
consensus_39#7      ------------------------------------------------------------
                                                                                

consensus_39#1      TCTGCCCGAGACGATATGCGGCACGACAGAGATAGTG-TGAACAGAAACACGAGGACTGC 253
consensus_39#6      ------------------------------------------------------------
consensus_39#2      --------------------------TGCAGATAGTG-TGAACAGAAACACGAGGACTGC 79
consensus_39#3      --------------------------TAGGGGTAGTGACCAGTGGCGCTATGGTGACTCC 201
consensus_39#5      GACAACCGAGACGATATGCGGCACGACAGAGATAGTG-TGAACAGAAACACGAGGACTGC 299
consensus_39#0      ---------------------------------------TCGTGTCG-TGTCGTGAGAGC 20
consensus_39#4      CGACCTTGAGAAGTTCTTCCGGAAATATGGTAGAATCAAGGAGGTCGCTATGAAGAATGG 167
consensus_39#7      ------------------------------------------------------------
                                                                                

consensus_39#1      ATC--TAGCTACAAGCAATCATTGC---CCAGATATGGACCAC---CAACACGCACCGAA 305
consensus_39#6      ----------------------------------------------------------GA 2
consensus_39#2      ATC--TAGCTACAAGCAATCATTGC---CCAGATATGGACCAC---CAACACGCACCGAA 131
consensus_39#3      CGTGGTGGTTATGGGGACTCGAGGCGATCTGCATATGGACCAC---CAACACGCACCGAA 258
consensus_39#5      ATC--TAGCTACAAGCAATCATTGC---CCAGATATGGACCAC---CAACACGCACCGAA 351
consensus_39#0      ATAAGCTTTTAGTGAACAAAGCAACATTTTTTACGTATATT-----CAGTATGGTAGGGA 75
consensus_39#4      ATTTGCCTTT-GTGGTAAGTCTAATGTGGTTCAATTGTTTTTTTTACAGTATGGTAGGGA 226
consensus_39#7      ----------------------------------------CAC---CAACACGCACCGAA 17
                                                                               *

consensus_39#1      TACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGAGCCATGTCCTCTTC 365
consensus_39#6      TGACGATGCAC-GCGATGGGCCCGCC--TTAAGGTCAAGTGGCA---CCAGGTTGGTTTC 56
consensus_39#2      TACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGATTTGAAGGATTAT 191
consensus_39#3      TACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGATTTGAAGGATTAT 318
consensus_39#5      TACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGATTTGAAGGATTAT 411
consensus_39#0      CAAGGGTCTATGTCGGTGGGCTT-CCATACGGCACCAGGGAAAGAGACCTTGAGAGATTT 134
consensus_39#4      CAAGGGTCTATGTCGGTGGGCTT-CCATACGGCACCAGGGAAAGAGACCTTGAGAGATTT 285
consensus_39#7      TACCGGCTCACCGTGGAAAATCTATCGAGTCGTGTCAGCTGGCAGGTAAGCAATATCTGT 77
                        *    *    *          *         **                    *  

consensus_39#1      ACCGAGGAGGGGTGACCGGTAGGGCCAATAGACTGATGATGTGCGATGATAAAGATGACG 425
consensus_39#6      T-----GAGGTGTCCCGGGTGAGAGAGATAACC-------GCGTGGCACTGGGTACACCT 104
consensus_39#2      AT----GAGACAGGCTGGTGAAGTGACATATGCA------GATGCACATAAGCAACGCAG 241
consensus_39#3      AT----GAGACAGGCTGGTGAAGTGACATATGCA------GATGCACATAAGCAACGCAG 368
consensus_39#5      AT----GAGACAGGCTGGTGAAGTGACAT------------------------------- 436
consensus_39#0      TTCAGAGGCTACGGTCGATTCCGTGATGTCCTCA-----TCAAGAACGGTTACGGTTTTG 189
consensus_39#4      TTCAGAGGCTACGGTCGATTCCGTGATGTCCTCA-----TCAAGAACGGTTACGGTTTTG 340
consensus_39#7      ACCCTTGCTTCACATTTTTACTATACATCCGATAG-----CTTTTTCGTGAGTTTGATTG 132
                          *                                                     

consensus_39#1      ATGCACGCGATGGGCCCGCCTTAAGGTCAAGTGGCACCAGTGATACGTGGTGAAACCCAG 485
consensus_39#6      AC-CACCTA------CCACCTTCTA--CTACTTGCGC-AGTGATACGTGGTGAAACCCAG 154
consensus_39#2      GAACGAAGGAGTTGTAGAATTTGCAACATATTCTGATTTGAAGAACGCCATCGATAAATT 301
consensus_39#3      GAACGAAGGAGTTGTAGAATTTGCAACATATTCTGATTTGAAGAACGCCATCGATAAATT 428
consensus_39#5      ------------------------------------------------------------
consensus_39#0      TTGTAAGTACTTGAATCAAATTTTATACACATACTTAACACTTTACTCTACTCAGTTTGG 249
consensus_39#4      TTGTAAGTACTTGAATCAAATTTTATACACATACTTAACACTTTACTCTACTCAGTTTGG 400
consensus_39#7      CTACTCGAGGTTT-CCAGAATGATGACGATATGCGAATATTCCATCCAAAATGCGCGCGG 191
                                                                                

consensus_39#1      TGACGAGATAGGTTCTTACGTATCTGCGATCTT-CTCATCGTGATCGCTGGGAGAGAAAA 544
consensus_39#6      TGACGAGATAGGTTCTTACGTATCTGCGATCTT-CTCATCGTGATCGCTGGGAGAGAAAA 213
consensus_39#2      GGATGACACAGAACTAAATGGACGTAGAATCAGACTTATCGAG---GATAAGAGACGGGG 358
consensus_39#3      GGATGACACAGAACTAAATGGACGTAGAATCAGACTTATCGAG---GATAAGAGACGGGG 485
consensus_39#5      ------------------------------------------------------------
consensus_39#0      TCTTATTATTTATCAATTTTTATTAAAAAAAATTTT-ATTTGCAAGTTGAATAATCATAT 308
consensus_39#4      TCTTATTATTTATCAATTTTTATTAAAAAAAATTTTTATTTGCAAGTTGAATAATCATAT 460
consensus_39#7      GGACCCAATATATATATATTCTTGCTGGCGTTTAATCGTTCCGGATTTCATATATTCCCC 251
                                                                                

consensus_39#1      ACGTCGTCTGNNTTCTACGAT--CATCAATGACTCTGACCTGTATCTTTGCCTGGATGTG 602
consensus_39#6      ACGTCGTCTGCCTTCTACGAT--CATCAATGACTCTGACCTGTATCTTTGCCTGGATGTG 271
consensus_39#2      ACGTCGTTCAAGGTCCTCAA----GTTCGAGATCAAGATCACGGTCACGATCTCGATCT- 413
consensus_39#3      ACGTCGTTCAAGGTCCTCAA----GTTCGAGATCAAGATCACGGTCACGAT--------- 532
consensus_39#5      ------------------------------------------------------------
consensus_39#0      ATTACATTTGCAAAAAAAAAAAGCATCCATCTTCATTTCCACTAACTAGGTTTATGAATT 368
consensus_39#4      ATTACATTTAGCGCTTAAAAATGCATCCATCTTCATTT---------------------- 498
consensus_39#7      GAGTTGAACCAAACTTACACGCGGTGGCATTTTTAGCACTAATATTTTTATTCGATTTTT 311
                                                                                

consensus_39#1      TACAACAGCAATCACCACTATTTTACTCTCTCTCTCAATATCT---TTCCATA------- 652
consensus_39#6      TACAACAGCAATCACCACTATTTTACTCTCTCTCTCAATATCT---TTCCATATCATTAT 328
consensus_39#2      CGTCGCCGTTCCCGCTCCCGCTCAAGGAGTCGCCGTAGTTCTC---GCAGCCGTAGTCGT 470
consensus_39#3      ------------------------------------------------------------
consensus_39#5      ------------------------------------------------------------
consensus_39#0      ACCATCCGATATAAAGTTGTTTGTGTGATATATATATATATATAAATTATATTTAAGTTA 428
consensus_39#4      ------------------------------------------------------------
consensus_39#7      CTTTCGCCATTTTTAAGTTCGTTTACGGATATCTGAAAC--------------------- 350
                                                                                

consensus_39#1      ------------------------------------------------------------
consensus_39#6      CACTATCATTGTTACCAAACATTTTTTCTATTATATCCTTTATAAAAAAA---------- 378
consensus_39#2      CGCAGTAGCCGTTCCAAATCAAGAGCACATACTAAATCAAAATCGAAATCCAAATCCAAA 530
consensus_39#3      ------------------------------------------------------------
consensus_39#5      ------------------------------------------------------------
consensus_39#0      AGTATCGATATTTTACGTTCGTTATTTTATTTTTTATTTTTATAATAACTTTAAACTACG 488
consensus_39#4      ------------------------------------------------------------
consensus_39#7      ------------------------------------------------------------
                                                                                

consensus_39#1      ------------------------------------------------------------
consensus_39#6      ------------------------------------------------------------
consensus_39#2      TCACCTGAACGTAGCCGAACTCGATCTAAATCCAAATCAAGAGACCGCTCAAAGTCGAAA 590
consensus_39#3      ------------------------------------------------------------
consensus_39#5      ------------------------------------------------------------
consensus_39#0      ATATTTAAATAAAATCTTGACACAATAACTTTCAAGTTTTATTATATTTTATTATTTTAT 548
consensus_39#4      ------------------------------------------------------------
consensus_39#7      ------------------------------------------------------------
                                                                                

consensus_39#1      ------------------------------------------------------------
consensus_39#6      ------------------------------------------------------------
consensus_39#2      TCTAAGTCAAAGT----------------------------------------------- 603
consensus_39#3      ------------------------------------------------------------
consensus_39#5      ------------------------------------------------------------
consensus_39#0      TGCTGACCAAAATGTGTAGAAGGTAAAGTGTTTTACTTAAAAAATAACTTGAACTCGTGA 608
consensus_39#4      ------------------------------------------------------------
consensus_39#7      ------------------------------------------------------------
                                                                                

consensus_39#1      ------------------------------------------------------------
consensus_39#6      ------------------------------------------------------------
consensus_39#2      ------------------------------------------------------------
consensus_39#3      ------------------------------------------------------------
consensus_39#5      ------------------------------------------------------------
consensus_39#0      GTTGATCTGACCTACCTTGAGCCCCCGATTCCGAGTCTCGACGTCGAAGTTGGGAGTACC 668
consensus_39#4      ------------------------------------------------------------
consensus_39#7      ------------------------------------------------------------
                                                                                

consensus_39#1      -----------------------------------
consensus_39#6      -----------------------------------
consensus_39#2      -----------------------------------
consensus_39#3      -----------------------------------
consensus_39#5      -----------------------------------
consensus_39#0      ATGATCGAACGTTAGAGCGCCGTGGCGTCGATCGG 703
consensus_39#4      -----------------------------------
consensus_39#7      -----------------------------------
                                                       




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)