These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 972 fasta sequence [AAAATTAAAATAACGTGAATGATGGATCATCAAATATTTAAAATATACAATCAAGAAGATTTTAATAGAATTACAAAAGGAATTAAAGTAGCACAATGCATGCAATCACGATCGTCATCTGTTTCAGAAAATGAGAAATTGTTGAATCAACTTGATGATTTAGTTGTATCCGATTCTTTAAGTTGTTCATTTTGTAATACTATATTTGAAGATAAAGCACAACAAAGACTTCATTATAAATTAGATTGGCATCCGATATAATTTAAAACAGCGTTTAAATGGATCAAAACCTATAAATGAAGATAAATTTAGCCTTCTTGCTGATGAAGGTAACGTTTCAAGTTTATCTGGTAGTGATGTAGATTCTGAAAATGAAGATGAGACATATGTTTCGGAAGCTGGAATTTTACCTAGTGGACATTGTGAAAATAGAAATCTTATTAATAAGAATAAAAAAATTGAGAAAAAAGGAAAAAATATGGAATCAATTTCTGATAGTTCTGATACAGAATGTTGTGATGATATTATAAAAGAGAAAAAAACTGAAGATTTATTAGTCACTGCAAGTCGCTCATTCAAAAGTTTTTTTTTGAAAATGGATGATGGAAATATATTTAGTATATACAGGTGTTTACTTCATAATAAAAAGGTCTGTTCATTTATAGTAATAGAGATATAGTTTTGTAAGTAACTTTCTCTGAGTATAGACATACTTGTCTATGGATTTTATCTTGTAATTTAATCTACTTTATTAGAATCACTTGGCGTGTCTATACTTGCCAGATCAGGAGAGATGCAATTACATTTTAGGAAATTCCAGAAGTAGACAATGAGATGATTGCTCAGGCATTGGACAGTGGGAGGAAAACAACATGGACTGTTATCATGATTGGTGGAGGACATTTTGCTGCAGCTGTATTTCAAGACGGAGAACCCGTTGTACATAAAACATTTCATTCCTATACTGTACGA] [+] EMBL BI946465 [AAAATTAAAATAACGTGAATGATGGATCATCAAATATTTAAAATATACAATCAAGAAGATTTTAATAGAATTACAAAAGGAATTAAAGTAGCACAATGCATGCAATCACGATCGTCATCTGTTTCAGAAAATGAGAAATTGTTGAATCAACTTGATGATTTAGTTGTATCCGATTCTTTAAGTTGTTCATTTTGTAATACTATATTTGAAGATAAAGCACAACAAAGACTTCATTATAAATTAGATTGGCATCCGATATAATTTAAAACAGCGTTTAAATGGATTAAAACCTATAAATGAAGATAAATTTAGCCTTCTTGCTGATGAAGGTAACGTTTCAAGTTTATCTGGTAGTGATGTAGATTCTG AAATGAACATGAGACATATGTT ] [+] EMBL BQ103807 [ TTTTAATACTATATTTGAAGATAAAGCACAACAAAGACTTCATTATAAATTAGATTGGCAT CGATATAATTTAAAACAGCGTTTAAATGGATCAAAACCTATAAATGAAGATAAATTTAGCCTTCTTGCTGATGAAGGTAACGTTTCAAGTTTATCTGGTAGTGATGTAGATTCTGAAAATGAAGATGAGACATATGTTTCGGAAGCTGGAATTTTACCTAGTGGACATTGTGAAAATAGAAATCTTATTAATAAGAATAAAAAAATTGAGAAAAAAGGAAAAAATATGGAATCAATTTCTGATAGTTCTGATACAGAATGTTGTGATGATATTATAAAAGAGAAAAAAACTGAAGATTTATTAGTCACTGCAAGTCGCTCATTCAAAAGTTTTTTTTTGAAAATGGATGATGGAAATATATTTAGTATATACAGGTGTTTACTTCATAATAAAAAGGTCTGTTCATTTATAGTAATAGAGATATAGTTTTGTAAGTAACTTTCTCTGAGTATAGACATACTTGTCTATGGATTTTATCTTGTAATTTAATCTACTTTATTAGAATCACTTGGCGTGTCTATACTTGCCAGATCAGGAGAGATGCAATTACATTTTAGGAAATTCCAGAAGTAGACAATGAGATGATTGCTCAGGCATTGGACAGTGGGAGGAAAACAACATGGACTGTTATCATGATTGGTGGAGGACATTTTGCTGCAGCTGTATTTCAAGACGGAGAACCCGTTGTACATAAAACATTTCATTCCTATACTGTACGA] consensusID : consensus_414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [AAAAGCGAGTAAATTTTCATGAAATTCTACTTCTAATTCTTGTTGAATTAATGAAACATCCATTGGAGCATTAGGAGTATTTATTTGATTATCCAATTCTTCAACTTTATCCAATTCTGATTCTGAAGATGATTGTGCTAACTTAGCAACTATATCAGGTAAAGGACGGCATGGACTTTTTCTTGGTTTTGCTCTATCTATATAAGATCGAGAATTTCTATGTTGTCTTTCGGGAGATGGTTGAGCAGGAACTTTATTCTTGTCATTATCTTGGGTATTACGGATATTACTGGAAGCATTAGAATCATTTTCTTCATTTTCTGTTTTTATTGGAATTTCCCCAGAAACATCAGTTTTTGATAATTTTTTTCTAAGNGGTTGACGAGGTGAAATAGGAAAAGAATCTGTAAAATCAGCTGCAGAACCATAAATTTCCATTGTACTTAATATATCATACACTCTTTTAACTTCACTGAATGTTGCTCTACGAGTAGGAAAAGGCAATGGTCTTAATCTTAAGTCATTCTTATCTAAAGGCGGATTTTTTCCTCCGAATAATACAG] [+] EMBL BI515548 [AAAAGCGAGTAAATTTTCATGAAATTCTACTTCTAATTCTTGTTGAATTAATGAAACATCCATTGGAGCATTAGGAGTATTTATTTGATTATCCAATTCTTCAACTTTATCCAATTCTGATTCTGAAGATGATTGTGCTAACTTAGCAACTATATCAGGTAAAGGACGGCATGGACTTTTTCTTGGTTTTGCTCTATCTATATAAGATCGAGAATTTCTATGTTGTCTTTCGGGAGATGGTTGAGCAGGAACTTTATTCTTGTCATTATCTTGGGTATTACGGATATTACTGGAAGCATTAGAATCATTTTCTTCATTTTCTGTTTTTATTGGAATTTCCCCAGAAACATCAGTTTTTGATAATTTTTTTCTAAGNGGTTGACGAGGTGAAATAGGAAAAGAATCTGTAAAATCAGCTGCAGAACCATAAATTTCCATTGTACTTAATATATCATACACTCTTTTAACTTCACTGAATGTTGCTCTACGAGTAGGAAAAGGCAATGGTCTTAATCTTAAGTCATTCTTATCTAAAGGCGGATTTTTTCCTCCGAATAATACAG] consensusID : consensus_414#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [GATGATGGAAATATATTTAGTATATACAGGTGTTTACTTCATAATAAAAAGGAAATTCCAGAAGTAGACAATGAGATGATTGCTCAGGCATTGGACAGTGGGAGGAAAACAACATGGACTGTTATCATGATTGGTGGAGGACATTTTGCTGCAGCTGTATTTCAAGACGGAGAACCCATTGTACATAAAACATTTCATTCCTATACTGTACGAGCAAAACAAGGCTTTGCCCAAAGTTCACGTACAACAGCTAATCATGCAAAAAGTGCTGGAGCTAGTTTACGTCGTTATAATGAAGCATCTCTTCTTCAGCATGTACAAGATATACTTGAATCGTGGTCATCTTATATTAATAATTCCTCTCTAATTTTATATAGAGCTGTTGGTCCATATAATCGAACTGTATTATTCGGAGGAAAAAATCCGCCTTTAGATAAGAA] [+] EMBL BI514565 [GATGATGGAAATATATTTAGTATATACAGGTGTTTACTTCATAATAAAAAGGAAATTCCAGAAGTAGACAATGAGATGATTGCTCAGGCATTGGACAGTGGGAGGAAAACAACATGGACTGTTATCATGATTGGTGGAGGACATTTTGCTGCAGCTGTATTTCAAGACGGAGAACCCATTGTACATAAAACATTTCATTCCTATACTGTACGAGCAAAACAAGGCTTTGCCCAAAGTTCACGTACAACAGCTAATCATGCAAAAAGTGCTGGAGCTAGTTTACGTCGTTATAATGAAGCATCTCTTCTTCAGCATGTACAAGATATACTTGAATCGTGGTCATCTTATATTAATAATTCCTCTCTAATTTTATATAGAGCTGTTGGTCCATATAATCGAACTGTATTATTCGGAGGAAAAAATCCGCCTTTAGATAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_414#0 AAAATTAAAATAACGTGAATGATGGATCATCAAATATTTAAAATATACAATCAAGAAGAT 60 consensus_414#2 -----------------GATGATGGA----AATATATTTAGTATATACAGGTGTTTACTT 39 consensus_414#1 ----------------------------------------------AAAAGCGAGTAAAT 14 * * * * consensus_414#0 TTTAATAGAATTACAAAAGGAATTAAAGTAGCACAATGCATGCAATCACGATCGTCATCT 120 consensus_414#2 CATAATAAA------AAGGAAATTCCAGAAGTAGACAATGAG-----ATGATTG-CTCAG 87 consensus_414#1 TTTCATGAAATTCTACTTCTAATTCTTGTTGAATTAATGAAAC-------ATCCATTGGA 67 * ** * **** * * * ** consensus_414#0 GTTTCAGAAAATGAGAAATTGTTGAATCAACTTGATGATTTAGTTG-TATCCGATTCTTT 179 consensus_414#2 GCATTGGACAGTGGGAGGAAAACAACATGGACTGTTATCATGATTGGTGGAGGACATTTT 147 consensus_414#1 GCATTAGG-AGTATTTATTTGATTATCCAATTCTTCAACTTTATCCAATTCTGATTCTGA 126 * * * * * * * * ** * consensus_414#0 AAGTTGTTCATTTTGTAATACTATATTTGAAGATAAAGCACAACAAAGACTTCATTA-TA 238 consensus_414#2 GCTGCAGCTGTATTTCAAGACGGA----GAACCCATTGTACATAAAACATTTCATTCCTA 203 consensus_414#1 AGATGATTGTGCTAACTTAGCAACTATATCAGGTAAAGGACGGCATGGACTTTTTCTTGG 186 * * * * * ** * * ** * consensus_414#0 AATTAGATTGGCATCCGATATAATTTAAAACAGCGTTTAAATGGATCA---AAACCTATA 295 consensus_414#2 TACTGTACGAGCAA--AACAAGGCTTTGCCCAAAGTTCACGTACAACAGCTAATCATGCA 261 consensus_414#1 TTTTGCTCTATCT----ATATAAGATCG---AGAATTTCTATGTTGTCTTTCGGGAGATG 239 * * * * * * ** * consensus_414#0 AATGAAGATAAATTTAGCCTTCTTGCTGATGAAGGTAACGTTTCAAGTTTATCTGGTAGT 355 consensus_414#2 AAAAGTGCTGGAGCTAGTTTACGTCGTTAT-AATGAAGCATCTCTTCTTCAGCATGTA-C 319 consensus_414#1 GTTGAGCAGGAACTTTATTCTTGTCATTATCTTGG--GTATTACGGATATTACTGGAAGC 297 * * * * ** * * * * * * * consensus_414#0 GATGTAG--ATTCTGAAAATGAAGATGAGACAT--ATGTTTCGGAAGCTGGAATTTTACC 411 consensus_414#2 AAGATAT--ACTTGAATCGTGGTCATCTTATATTAATAATTCC---TCTCTAATTTTATA 374 consensus_414#1 ATTAGAATCATTTTCTTCATTTTCTGTTTTTATTGGAATTTCCCCAGAAACATCAGTTTT 357 * * * * ** *** * * consensus_414#0 TAGTGGACATTGTGAAAATAG--AAATCTTATTAATAAGAATAAAAAAATTGAGAAAAAA 469 consensus_414#2 TAGAGCTGTTGGTCCATATAATCGAACTGTATTATTCGGAGGAAAAAATCCGCCTTTAGA 434 consensus_414#1 TGATAATTTTTTTCTAAGNGGTTGACGAGGTGAAATAGGAAAAGAATCTGTAAAATCAGC 417 * * * * * * * ** * ** * consensus_414#0 GGAAAAAATATGGAATCAATTTCTGATAGTTCTGATACAGAATGTTGTGATGATATTATA 529 consensus_414#2 TAAGAA------------------------------------------------------ 440 consensus_414#1 TGCAGAACCATAAATTTCCATTGTACTTAATATATCATACACTCTTTTAACTTCACTGAA 477 * consensus_414#0 AAAGAGAAAAAAACT--GAAGATTTATTAGTC---ACTGCAAGTCGCTC--ATTCAAAAG 582 consensus_414#2 ------------------------------------------------------------ consensus_414#1 TGTTGCTCTACGAGTAGGAAAAGGCAATGGTCTTAATCTTAAGTCATTCTTATCTAAAGG 537 consensus_414#0 TTTTTTTTTGAAAATGGATGATGGAAATATATTTAGTATATACAGGTGTTTACTTCATAA 642 consensus_414#2 ------------------------------------------------------------ consensus_414#1 CGGATTTTTTCCTCCGAATAATACAG---------------------------------- 563 consensus_414#0 TAAAAAGGTCTGTTCATTTATAGTAATAGAGATATAGTTTTGTAAGTAACTTTCTCTGAG 702 consensus_414#2 ------------------------------------------------------------ consensus_414#1 ------------------------------------------------------------ consensus_414#0 TATAGACATACTTGTCTATGGATTTTATCTTGTAATTTAATCTACTTTATTAGAATCACT 762 consensus_414#2 ------------------------------------------------------------ consensus_414#1 ------------------------------------------------------------ consensus_414#0 TGGCGTGTCTATACTTGCCAGATCAGGAGAGATGCAATTACATTTTAGGAAATTCCAGAA 822 consensus_414#2 ------------------------------------------------------------ consensus_414#1 ------------------------------------------------------------ consensus_414#0 GTAGACAATGAGATGATTGCTCAGGCATTGGACAGTGGGAGGAAAACAACATGGACTGTT 882 consensus_414#2 ------------------------------------------------------------ consensus_414#1 ------------------------------------------------------------ consensus_414#0 ATCATGATTGGTGGAGGACATTTTGCTGCAGCTGTATTTCAAGACGGAGAACCCGTTGTA 942 consensus_414#2 ------------------------------------------------------------ consensus_414#1 ------------------------------------------------------------ consensus_414#0 CATAAAACATTTCATTCCTATACTGTACGA 972 consensus_414#2 ------------------------------ consensus_414#1 ------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |