These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TTCTCAAACGGAACTGGGCATTGAGTTGAAAAAACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGAAAGTGAGGAAAATAGAGAAGGGAGTGCAAGTTTCGATGGAAGAGAAAAAGGATATCGGTAAACGTTCTCTACAGTTACTTAATGTACAATGAAACGTTGGTCGGCATCTTTGTGATGATAACGATTATAGGAATGGTCAGATCATGGTTGTTGGTCCCTCAACCGTTAGTTATCATAGAGGACGTTTGTATAAATAAATTCGCCTCGGCGTACGGTATTGCCGGCGCTATTAACGGAATAATATCTATAGTGTGCGNNNCGATCGTTGGTAAGTAAGTAAAAATCCAATAGGCGATTTCCGTTCGAATAACCTCAACAACAATAACGCACGAGAGAGAGAGAGAGACACGTGCGCCTAGTAATAATAATAA] [+] EMBL BI507030 [TTCTCAAACGGAACTGGGCATTGAGTTGAAAAAACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGAAAGTGAGGAAAATAGAGAAGGGAGTGCAAGTTTCGATGGAAGAGAAAAAGGATATCGGTAAACGTTCTCTACAGTTACTTAATGTACAATGAAACGTTGGTCGGCATCTTTGTGATGATAACGATTATAGGAATGGTCAGATCATGGTTGTTGGTCCCTCAACCGTTAGTTATCATAGAGGACGTTTGTATAAATAAATTCGCCTCGGCGTACGGTATTGCCGGCGCTATTAACGGAATAATATCTATAGTGTGCGNNNCGATCGTTGGTAAGTAAGTAAAAATCCAATAGGCGATTTCCGTTCGAATAACCTCAACAACAATAACGCACGAGAGAGAGAGAGAGACACGTGCGCCTAGTAATAATAATAA] consensusID : consensus_426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [CCAAGTGATCATCGGCCTCGGTGGAATCGCGTATCCCATATGCATCGACAAAATGATGAAAATGTACGGGTTTCGAGGTAAGTGAAAAACGAAAAAAAAAAAATTATTCGCGATGTAAATATGGCGTAATACCGTGTGTTGGTGATTTGTGTGGAGGGACCGCGTTGATGACGGGCGCCATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGAGTGGCACGCGAGGAAGCCGGAAGACGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTGGAAATTGCGTGGTGTGATACCGGCGTCGGATCGTCGTTACAGCGACTTTATAACAGCCCCTATAAAAACGAGATGCAGCAGCTTAACGAGCCTCAAGGACGAGAGTGGAAAACAGGTTCCGCTTTTGATTGAAACGTTGAAAGTTACTTAATGTACAATGAAACGTTGGTCGGCATCTTTGTGATGATAACGATTATAG] [+] EMBL BI510470 [CCAAGTGATCATCGGCCTCGGTGGAATCGCGTATCCCATATGCATCGACAAAATGATGAAAATGTACGGGTTTCGAGGTAAGTGAAAAACGAAAAAAAAAAAATTATTCGCGATGTAAATATGGCGTAATACCGTGTGTTGGTGATTTGTGTGGAGGGACCGCGTTGATGACGGGCGCCATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGAGTGGCACGCGAGGAAGCCGGAAGACGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTGGAAATTGCGTGGTGTGATACCGGCGTCGGATCGTCGTTACAGCGACTTTATAACAGCCCCTATAAAAACGAGATGCAGCAGCTTAACGAGCCTCAAGGACGAGAGTGGAAAACAGGTTCCGCTTTTGATTGAAACGTTGAAAGTTACTTAATGTACAATGAAACGTTGGTCGGCATCTTTGTGATGATAACGATTATAG] consensusID : consensus_426#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [CATCGACAAAATGATGAAAATGTACGGGTTTCGAGGGACCGCGTTGATGACGGGCGCCATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGAGTGGCACGCGAGGAAGCCGGAAGATGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTGGAAATTGCGTGGTGTGATACCGGCGTCCGATCGTCGTTACAGCGACTTTATAACAGCCCCTGTAAAAACGAGATGCAGCAGCTTAACGAGCCTCAAGGACGAGAGTGGAAAACAGGTTCCGCTTTTGATTGAAACGTTGAAAACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTC] [+] EMBL BI511524 [CATCGACAAAATGATGAAAATGTACGGGTTTCGAGGGACCGCGTTGATGACGGGCGCCATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGAGTGGCACGCGAGGAAGCCGGAAGATGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTGGAAATTGCGTGGTGTGATACCGGCGTCCGATCGTCGTTACAGCGACTTTATAACAGCCCCTGTAAAAACGAGATGCAGCAGCTTAACGAGCCTCAAGGACGAGAGTGGAAAACAGGTTCCGCTTTTGATTGAAACGTTGAAAACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTC] consensusID : consensus_426#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [GAACTGGGCATTGAGTTGAAAAAGTAACTAGTTTCGAGTAAAGTTACTACTTTAAGTGATTTACTTATTAAACTGCTCGAATAATGTTTATTTATCAACTAGTAAATATTAGAATTATTCTTTCTTTCATGTAGTTCGCGTGTATGGAAATTCATACGCTCATACGAAGAAATATATTTTATTTATCATTAAATTTATTTTATTTATATTTTTTTTTTTGTTAAAGACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGA] [+] EMBL BI516391 [GAACTGGGCATTGAGTTGAAAAAGTAACTAGTTTCGAGTAAAGTTACTACTTTAAGTGATTTACTTATTAAACTGCTCGAATAATGTTTATTTATCAACTAGTAAATATTAGAATTATTCTTTCTTTCATGTAGTTCGCGTGTATGGAAATTCATACGCTCATACGAAGAAATATATTTTATTTATCATTAAATTTATTTTATTTATATTTTTTTTTTTGTTAAAGACTCCAGCGAAAAGGGTAGCCTCGATATCCGAGATCGAAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_426#0 TTCTCAAACGGAACTGGGCATTGAGTTGAAAAAACTCCAGCGAAAAGGGTAGCCTCGATA 60 consensus_426#3 ----------GAACTGGGCATTGAGTTGAAAAAGTAACTA-GTTTCGAGTAAAGTTACTA 49 consensus_426#1 ---------CCAAGTGATCATCGGCCTCGGTGGAATCGCGTATCCCATATGCATCGACAA 51 consensus_426#2 ------------------------------------------------------------ consensus_426#0 TCCGAGATCGAAGACAGAATTTACAA-TCGAATGAAATCTAAATCGATGCGTGAATTGTT 119 consensus_426#3 CTTTAAGTGATTTACTTATTAAACTGCTCGAATAATGTTTA--TTTAT---CAACTAGTA 104 consensus_426#1 AATGATGAAAATGTACGGGTTTCGAGGTAAGTGAAAAACGAAAAAAAA---AAAATTATT 108 consensus_426#2 ------------------------------------------------------------ consensus_426#0 GACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGG 179 consensus_426#3 AATATTAGAATTATTC---TTTCTTTCATGTAGTTCG-CGTGTATGGAAAT-----TCAT 155 consensus_426#1 CGCGATGTAAATATGGCGTAATACCGTGTGTTGGTGA-TTTGTGTGGAGGGACCGCGTTG 167 consensus_426#2 -----------CATCG-ACAAAATGATGAAAATGT-A-CGGGTTTCGAGGGACCGCGTTG 46 ** * * * * consensus_426#0 AAGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGAAAGTGAGGAAAATAGAGAA 239 consensus_426#3 ACGCTCA-----TACGAAGAAATATATTTTATTTATCATTAAATTTATTTTATTTATA-- 208 consensus_426#1 ATGACGGGCGC-CATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGA 226 consensus_426#2 ATGACGGGCGC-CATGAGTTTGAACTCCATCGTCGGTATGACGATGATGCATCCCGTTGA 105 * * * * * * * * * consensus_426#0 GGGAGTGCAAGTTTCGATGGAAGAGAAAAAGGATATCGGTAAACGTTCTCTACAGTTACT 299 consensus_426#3 -----TTTTTTTTTTTGTTAAAGACTCCAGCGAAAAGGGTAGCCTCGATATCCGAG-ATC 262 consensus_426#1 GTGGCACGCGAGGAAGCCGGAAGACGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTG 286 consensus_426#2 GTGGCACGCGAGGAAGCCGGAAGATGTCAGGGCGGAGAAGAGGAGGGCGAAAGAGGAGTG 165 **** * * * consensus_426#0 TAA--TGTACAATGAAACGTTGG-TCGGCATCTTTGTGATGATAACGATTATAGGAATGG 356 consensus_426#3 GAA--GACAGAATTTACAATCGA-ATGAAATCT--------AAATCGATGCGTGAATTGT 311 consensus_426#1 GAAATTGCGTGGTGTGATACCGGCGTCGGATCGTCGT---TACAGCGACTTTATAACAGC 343 consensus_426#2 GAAATTGCGTGGTGTGATACCGGCGTCCGATCGTCGT---TACAGCGACTTTATAACAGC 222 ** * * *** * * *** * * consensus_426#0 TCAGATCATGGTTGTTGGTCCCTCAACCGTTAGTTATCATAGAGGACGTTTGTATAAATA 416 consensus_426#3 TGACGCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAA-----TTTGGTGACAGG 366 consensus_426#1 CCCTATAAAAACGAGATGCAGCA-GCTTAACGAGCCTCAAGGACGA-GAGTGGAAAACAG 401 consensus_426#2 CCCTGTAAAAACGAGATGCAGCA-GCTTAACGAGCCTCAAGGACGA-GAGTGGAAAACAG 280 * * * * * ** * consensus_426#0 AATTCGCCTCGGCGTACGGTATTGCCGGCGCTATTAACGGAATAATATCTATAGTGTGCG 476 consensus_426#3 GATCGGA---AGTCTAGGGGACACCAGGCAATATCACTCGGACGGGACGA---------- 413 consensus_426#1 GTTCCGCTTTTGATTGAAACGTTGAAAGTTACTTAATGTACAATGAAACGTTGGTCGGCA 461 consensus_426#2 GTTCCGCTTTTGATTGAAACGTTGAAAACTCC--AGCGAAAAGGGTAGCCTCGATATCCG 338 * * * * * * consensus_426#0 NNNCGATCGTTGGTAAGTAAGTAAAAATCCAATAGGCGATTTCCGTTCGAATAACCTCAA 536 consensus_426#3 ------------------------------------------------------------ consensus_426#1 TCTTTGTGATGATAACGATTATAG------------------------------------ 485 consensus_426#2 AGATCG--AAGACAGAATTTACAATCGAATGAAATCTAAATCGATGCGTGAATTGTTGAC 396 consensus_426#0 CAACAATAACGCACGAGAGAGAGAGAGAGACACGTGCGCCTAGTAATAATAATAA----- 591 consensus_426#3 ------------------------------------------------------------ consensus_426#1 ------------------------------------------------------------ consensus_426#2 GCAACGGTTATCCGCGTTTTCCTCGTCAAGTTTGATGAATTTGGTGACAGGGATCGGAAG 456 consensus_426#0 --------------------------- consensus_426#3 --------------------------- consensus_426#1 --------------------------- consensus_426#2 TCTAGGGGACACCAGGCAATATCACTC 483 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |